Ss1.1-Mixn-0008d13.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TCACCAGCCTCCAGGAGACAGGGCTCAAGGTGAACCATCCGGCGTCCTTTGCAGTGCAGC TGAGCGGTGCTCGGGGTGTGATCGATGCCCGGATGCACACGCCCTCGGGTGCCGTGGAGG AGTGCTACGTGTCCGAGCTGGACAGTGACAAGCACACCATCCGCTTCATCCCTCATGAGA ACGGCGTCCACTCCATCGATGTCAAGTTCAACGGTGCCCACATCCCCGGCAGTCCCTTCA AGATCCGCGTCGGGGAGCAGAGCCAGGCTGGGGACCCAGGCTTGGTGTCAGCGTATGGTC CTGGGCTCGAGGGAGGCACTACAGGAGTGTCATCCGAGTTCATCGTCAACACCTTGAATG CGGGCTCAGGGGCCTTATCTGTCACCATCGACGGCCCCTCCAAGGTGCAGCTAGACTGTC GGGAGTGTCCTGAGGGGCACGTGGTTACCTATACTCCCATGGCTCCTGGCAACTACCTCA TTGCCATCAAGTATGGTGGCCCCCAGCACATTGTGGGCAGCCCCTTCAAGGCCAAAGTCA CAGGTCCCCGGCTGTCAGGAGGCCACAGCCTTCACGAGACCTCCACGGTTCTGGTGGAGA CTGTGACCAAGTCGTCCTCAAGCCGGGGCTCCAGCTACAGCTCCATCCCCAAGTTCTCCT CGGATGCCAGCAAGGTGGTGACGCGGGGCCCCGGGCTGTCCCAGGCCTTTGTGGGCCAGA AGAACTCCTTCACCGTGGACTGCAGCAAAGCAGGCACCAACATGATGATGGTGGGCGTGC ACGGGCCCAAGACCCCCTGTGAGGAGGTGTACGTGAAGCACGTGGGGAACCGGGTCTACA ACGTCACCTACACCGTCAAGGAGAAAGGGGACTACATCCTCATTGTCAAGTGGGGCGACG AAAGTGTCCCCGGAAGCCCCTTCAAAGTCAACGTGCCCTGAATCCCAGACGTGCCTCCCC CAGCCTCGGCCCCCACCTCCAGCCAAACACACTCACTCACCCACACACACACACACACAA ATGGGCCACACCCAGATGCACACGCGCAGAATCAGACACCACAACCACCTGCCCTGGGGC GAGGAAGGTGTGGCCCTGTCCCCCTTCCTGCCAGGTCCCTGGCTTGACGGGCCTCGTCTG TCTCAGGGCAGTGTCCCTTGCCTCAAAGGTGACATGAGGATGGACTGGGGGTTGGGGGGC CAGGGAAGCCCTGAGTTTTCTGGTGGGGCTGAGGCCAGTGGGGGAGCACATGTTTGGGGG TATCTGCGTGTGTGACACCCTCAAACTGCACTGCCGGCCCGGCCTCCTTGCCACTGAGGA CTGCGCCCAGTCCCTCTGGTGGCACAAGCCCAGAGTGGTAAGGACTTGGAAAAGAAAGCA CAGTCGGAGGGGAAAATGGACCCGGGGGTGGCGGCAGCAGCAGCCTTGGCACCGGGCCTG GCCCTAGGTGACTGCGATCCCAGCCAGGCTTCCTGGGGGACTGATCTCTCTCTCTCCTTT TTTTTTTTTTTTATGATTGCACAGCTCTGCCCCACGGGGGGGCCTTTTTTACACACTGCG AGGCCCAGCTTTCTGGGGGGACTTTTGCACATGTCATGCGGCTCAGCTGGGAGCCGCTTA GGTGGAAAGCTCCAAATAAAGTGCGGCCTGTCGCAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TCACCAGCCTCCAGGAGACAGGGCTCAAGGTGAACCATCCGGCGTCCTTTGCAGTGCAGC TGAGCGGTGCTCGGGGTGTGATCGATGCCCGGATGCACACGCCCTCGGGTGCCGTGGAGG AGTGCTACGTGTCCGAGCTGGACAGTGACAAGCACACCATCCGCTTCATCCCTCATGAGA ACGGCGTCCACTCCATCGATGTCAAGTTCAACGGTGCCCACATCCCCGGCAGTCCCTTCA AGATCCGCGTCGGGGAGCAGAGCCAGGCTGGGGACCCAGGCTTGGTGTCAGCGTATGGTC CTGGGCTCGAGGGAGGCACTACAGGAGTGTCATCCGAGTTCATCGTCAACACCTTGAATG CGGGCTCAGGGGCCTTATCTGTCACCATCGACGGCCCCTCCAAGGTGCAGCTAGACTGTC GGGAGTGTCCTGAGGGGCACGTGGTTACCTATACTCCCATGGCTCCTGGCAACTACCTCA TTGCCATCAAGTATGGTGGCCCCCAGCACATTGTGGGCAGCCCCTTCAAGGCCAAAGTCA CAGGTCCCCGGCTGTCAGGAGGCCACAGCCTTCACGAGACCTCCACGGTTCTGGTGGAGA CTGTGACCAAGTCGTCCTCAAGCCGGGGCTCCAGCTACAGCTCCATCCCCAAGTTCTCCT CGGATGCCAGCAAGGTGGTGACGCGGGGCCCCGGGCTGTCCCAGGCCTTTGTGGGCCAGA AGAACTCCTTCACCGTGGACTGCAGCAAAGCAGGCACCAACATGATGATGGTGGGCGTGC ACGGGCCCAAGACCCCCTGTGAGGAGGTGTACGTGAAGCACGTGGGGAACCGGGTCTACA ACGTCACCTACACCGTCAAGGAGAAAGGGGACTACATCCTCATTGTCAAGTGGGGCGACG AAAGTGTCCCCGGAAGCCCCTTCAAAGTCAACGTGCCCTGAATCCCAGACGTGCCTCCCC CAGCCTCGGCCCCCACCTCCAGCCAAACACACTCACTCACCCACACACACACACACACAA ATGGGCCACACCCAGATGCACACGCGCAGAATCAGACACCACAACCACCTGCCCTGGGGC GAGGAAGGTGTGGCCCTGTCCCCCTTCCTGCCAGGTCCCTGGCTTGACGGGCCTCGTCTG TCTCAGGGCAGTGTCCCTTGCCTCAAAGGTGACATGAGGATGGACTGGGGGTTGGGGGGC CAGGGAAGCCCTGAGTTTTCTGGTGGGGCTGAGGCCAGTGGGGGAGCACATGTTTGGGGG TATCTGCGTGTGTGACACCCTCAAACTGCACTGCCGGCCCGGCCTCCTTGCCACTGAGGA CTGCGCCCAGTCCCTCTGGTGGCACAAGCCCAGAGTGGTAAGGACTTGGAAAAGAAAGCA CAGTCGGAGGGGAAAATGGACCCGGGGGTGGCGGCAGCAGCAGCCTTGGCACCGGGCCTG GCCCTAGGTGACTGCGATCCCAGCCAGGCTTCCTGGGGGACTGATCTCTCTCTCTCCTTT TTTTTTTTTTTTATGATTGCACAGCTCTGCCCCACGGGGGGGCCTTTTTTACACACTGCG AGGCCCAGCTTTCTGGGGGGACTTTTGCACATGTCATGCGGCTCAGCTGGGAGCCGCTTA GGTGGAAAGCTCCAAATAAAGTGCGGCCTGTCGCAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAA |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 361-480, - strand, RNAz p=0.596168 | |
| 427-545, - strand, RNAz p=0.694461 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 361-480, - strand, RNAz p=0.596168 | |
| 427-545, - strand, RNAz p=0.694461 |
| Aligned organism(s): 35 entry(ies) | More info |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
| 322-545, gnl|bosTau2|chr4 (50483371-50483148) | |
| 322-545, gnl|canFam2|chr14 (10751974-10751744) | |
| 322-545, gnl|canFam2|chr14 (10751827-10751974) | |
| 322-545, gnl|danRer3|chr4 (9127816-9127963) | |
| 322-545, gnl|danRer3|chrUn (92101146-92100919) | |
| 322-545, gnl|dasNov1|scaffold_1198 (30777-30546) | |
| 322-545, gnl|dasNov1|scaffold_1198 (30629-30777) | |
| 322-545, gnl|echTel1|scaffold_175788 (3234-3462) | |
| 322-545, gnl|echTel1|scaffold_175788 (3380-3234) | |
| 322-545, gnl|fr1|chrUn (177073111-177072886) | |
| 322-545, gnl|fr1|chrUn (269466113-269466258) | |
| 322-545, gnl|galGal2|chrUn (12693890-12694120) | |
| 322-545, gnl|galGal2|chrUn (12694037-12693890) | |
| 322-545, gnl|hg17|chr7 (128091119-128091349) | |
| 322-545, gnl|hg17|chr7 (128147928-128148074) | |
| 322-545, gnl|Hg17|chr7 (128148071-128147849) | |
| 322-545, gnl|loxAfr1|scaffold_39612 (13542-13311) | |
| 322-545, gnl|loxAfr1|scaffold_39612 (13394-13542) | |
| 322-545, gnl|mm7|chr6 (29391510-29391740) | |
| 322-545, gnl|mm7|chr6 (29391657-29391510) | |
| 322-545, gnl|Mm7|chr6 (29391511-29391734) | |
| 322-545, gnl|monDom2|scaffold_22 (15726741-15726514) | |
| 322-545, gnl|monDom2|scaffold_22 (15726595-15726742) | |
| 322-545, gnl|oryCun1|scaffold_111430 (9113-9343) | |
| 322-545, gnl|oryCun1|scaffold_62140 (1643-1790) | |
| 322-545, gnl|panTro1|chr6 (130482757-130482987) | |
| 322-545, gnl|panTro1|chr6 (130540050-130540197) | |
| 322-545, gnl|rheMac2|chr3 (166186989-166187219) | |
| 322-545, gnl|rheMac2|chr3 (166242771-166242918) | |
| 322-545, gnl|rn3|chr4 (56597454-56597684) | |
| 322-545, gnl|rn3|chr4 (56597601-56597454) | |
| 322-545, gnl|tetNig1|chr13 (9995365-9995590) | |
| 322-545, gnl|tetNig1|chrUn_random (126655050-126655195) | |
| 322-545, gnl|xenTro1|scaffold_20 (3270779-3271009) | |
| 322-545, gnl|xenTro1|scaffold_20 (3270926-3270779) |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 322-545, gnl|bosTau2|chr4 (50483371-50483148) | |
| 322-545, gnl|canFam2|chr14 (10751974-10751744) | |
| 322-545, gnl|canFam2|chr14 (10751827-10751974) | |
| 322-545, gnl|danRer3|chr4 (9127816-9127963) | |
| 322-545, gnl|danRer3|chrUn (92101146-92100919) | |
| 322-545, gnl|dasNov1|scaffold_1198 (30777-30546) | |
| 322-545, gnl|dasNov1|scaffold_1198 (30629-30777) | |
| 322-545, gnl|echTel1|scaffold_175788 (3234-3462) | |
| 322-545, gnl|echTel1|scaffold_175788 (3380-3234) | |
| 322-545, gnl|fr1|chrUn (177073111-177072886) | |
| 322-545, gnl|fr1|chrUn (269466113-269466258) | |
| 322-545, gnl|galGal2|chrUn (12693890-12694120) | |
| 322-545, gnl|galGal2|chrUn (12694037-12693890) | |
| 322-545, gnl|hg17|chr7 (128091119-128091349) | |
| 322-545, gnl|hg17|chr7 (128147928-128148074) | |
| 322-545, gnl|Hg17|chr7 (128148071-128147849) | |
| 322-545, gnl|loxAfr1|scaffold_39612 (13542-13311) | |
| 322-545, gnl|loxAfr1|scaffold_39612 (13394-13542) | |
| 322-545, gnl|mm7|chr6 (29391510-29391740) | |
| 322-545, gnl|mm7|chr6 (29391657-29391510) | |
| 322-545, gnl|Mm7|chr6 (29391511-29391734) | |
| 322-545, gnl|monDom2|scaffold_22 (15726741-15726514) | |
| 322-545, gnl|monDom2|scaffold_22 (15726595-15726742) | |
| 322-545, gnl|oryCun1|scaffold_111430 (9113-9343) | |
| 322-545, gnl|oryCun1|scaffold_62140 (1643-1790) | |
| 322-545, gnl|panTro1|chr6 (130482757-130482987) | |
| 322-545, gnl|panTro1|chr6 (130540050-130540197) | |
| 322-545, gnl|rheMac2|chr3 (166186989-166187219) | |
| 322-545, gnl|rheMac2|chr3 (166242771-166242918) | |
| 322-545, gnl|rn3|chr4 (56597454-56597684) | |
| 322-545, gnl|rn3|chr4 (56597601-56597454) | |
| 322-545, gnl|tetNig1|chr13 (9995365-9995590) | |
| 322-545, gnl|tetNig1|chrUn_random (126655050-126655195) | |
| 322-545, gnl|xenTro1|scaffold_20 (3270779-3271009) | |
| 322-545, gnl|xenTro1|scaffold_20 (3270926-3270779) |
| Expressed library(ies): 10 entry(ies) | More info |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
| mas (1.68244) | |
| ese (0.885516) | |
| nms (0.427716) | |
| ton (0.351) | |
| hlv (0.278513) | |
| pla (0.267344) | |
| cov (0.132153) | |
| cly (0.120642) | |
| eru (0.120048) | |
| jca (0.11396) |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| mas (1.68244) | |
| ese (0.885516) | |
| nms (0.427716) | |
| ton (0.351) | |
| hlv (0.278513) | |
| pla (0.267344) | |
| cov (0.132153) | |
| cly (0.120642) | |
| eru (0.120048) | |
| jca (0.11396) |