Non-Coding RNA Search

Ss1.1-Mixn-0008g13.5

Sequence:


               
               TACATTTCTACTACTTTTGGAAAACTTTCAAAAGTTTGTTTTTATTGTATTAACAACTGA
ACTAGGTTGTAACAAATTCTTGTCCTTGTCATAGAACTTATTATTTTAGACTCAAATTTT
TCTTTTTTGACCCTGATTTTATCCTCTTTCCTTAATACAAATTTTCCCCTTACTTTCAGA
GTGAGCATTTCACTATGATTATTGAATATCTAGTGCATAAAATTGATATATGAAGCAAAT
GAGTATTTATAAAATACCAAGAATGTGACCATCGTTTGCCATCTAGTTAGGAAGAACAGT
TTAGATAATTCAAATTACGAAACTTCTTGGTTGGAAATGTGTTCAGTAGCAATTCTGACT
TGAGTGGTTTAAGCAAATAGAGGTTTGTGCCTCTCGTGTAACAAGTCCAGAGGTAGAGGC
TTTCTGGTGTGTCATAAACATCTCCAGGTCAATATCTCCAGATTTCTCTTTGCCTTTTTT
TTAATGTTTGTTGCTTTATGATCATAAAATAGGTGCTGCAACAAATAGTGACCATATTCA
AAGGGAGAAGAGGAAAGGAGAAGGATTGCTTTTCACCTCTATCAGAAAAGAAAAAGCTTT
CTCAGAATCAGCCTCTCAAGCAGATTGCCACATGGATCTTCCTATTAGAACTGGGTCCCA
GCGCCACCCTTGGTTGCTAGGGAGGCAAGGAAATCAGGGGACAGATTTGTCATAATTGGC
TTAGAAATATCACAACTCATTGTTCAGGACTGAGCACATTGCCACTGAATAAAATAGGAG
TCTGTAGGATAGAAAAAAAATGGGGGAATGGATATACGGTAAGCAATAGTGTCTACTCCA
GCTATACTAGTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TACATTTCTACTACTTTTGGAAAACTTTCAAAAGTTTGTTTTTATTGTATTAACAACTGA
ACTAGGTTGTAACAAATTCTTGTCCTTGTCATAGAACTTATTATTTTAGACTCAAATTTT
TCTTTTTTGACCCTGATTTTATCCTCTTTCCTTAATACAAATTTTCCCCTTACTTTCAGA
GTGAGCATTTCACTATGATTATTGAATATCTAGTGCATAAAATTGATATATGAAGCAAAT
GAGTATTTATAAAATACCAAGAATGTGACCATCGTTTGCCATCTAGTTAGGAAGAACAGT
TTAGATAATTCAAATTACGAAACTTCTTGGTTGGAAATGTGTTCAGTAGCAATTCTGACT
TGAGTGGTTTAAGCAAATAGAGGTTTGTGCCTCTCGTGTAACAAGTCCAGAGGTAGAGGC
TTTCTGGTGTGTCATAAACATCTCCAGGTCAATATCTCCAGATTTCTCTTTGCCTTTTTT
TTAATGTTTGTTGCTTTATGATCATAAAATAGGTGCTGCAACAAATAGTGACCATATTCA
AAGGGAGAAGAGGAAAGGAGAAGGATTGCTTTTCACCTCTATCAGAAAAGAAAAAGCTTT
CTCAGAATCAGCCTCTCAAGCAGATTGCCACATGGATCTTCCTATTAGAACTGGGTCCCA
GCGCCACCCTTGGTTGCTAGGGAGGCAAGGAAATCAGGGGACAGATTTGTCATAATTGGC
TTAGAAATATCACAACTCATTGTTCAGGACTGAGCACATTGCCACTGAATAAAATAGGAG
TCTGTAGGATAGAAAAAAAATGGGGGAATGGATATACGGTAAGCAATAGTGTCTACTCCA
GCTATACTAGTC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               376-479, - strand, RNAz p=0.887607

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               376-479, - strand, RNAz p=0.887607

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-852, gnl|bosTau2|chr1 (34096790-34095933)
               

               
               1-852, gnl|Hg17|chr3 (115840368-115839480)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-852, gnl|bosTau2|chr1 (34096790-34095933)
               

               
               1-852, gnl|Hg17|chr3 (115840368-115839480)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               liv (0.146284)
               

               
               ova (0.129132)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               liv (0.146284)
               

               
               ova (0.129132)

	1-852, gnl\|bosTau2\|chr1 (34096790-34095933)
	1-852, gnl\|Hg17\|chr3 (115840368-115839480)