Non-Coding RNA Search

Ss1.1-Mixn-0008k08.5

Sequence:


               
               GAATCGTGGGACTAAATTTTCTAAACAACCATTTTTAATCTGTTGGAACAAGTTGATTTA
CCAATGAATATTTCAGCATAGACTCTGGGGTGGGAAGGATCCTGGCTGCTTATGGTTTGC
GCACAACTAACAGTTGGGCTCCCTCTGTTGTCCAAGGGCATCCGTGGTCTGGCATGAAGA
CGTGGTCCTTTCTCACCTTGGAACCGGTGCAGAGGTGAAGAGGCAGATTGACTACAAGAA
ACCATTGTCACTTGCCCTGAATTTCCTCATCTGTCACAGGTCATATCTGTGGCCTGTGCT
GAGTCCAGATCTCAGGCACTGCCCCACCTCTCACATGTCACTGGGCCAAATGCAGCAAAT
TCCTGATTTGATAAAGAGTTTTGTTACAGGATAGTGAGAGGAAAGTGGCTTTCCCCATGT
CCCTGGATTCCTCAGGTGCATCTCCTAAGGTGAGGAGGTGATCCAGGAATCCATGGACTT
CCTTAGAAAGTAGTTTGTTCTCCTGCTTTATGAATGGACACAAGATGCTGGATGTCCTTG
GAGAAGAGTTAGGATGAATCTTTGGTGTACCTCATTTTGCATAAATGTATTCCTGAAAAG
CCGCTTTTGAATCAAATTCTCTGCTTTAGGAGAGCACAGTATTTAACGGAACCCTATGGA
GAATCCCTTTACAATGTGAAAAATCGTCTCCTAACTGATTTCTTCTGTCTATGTTTTTCG
ATAACTTGGATTTTTACATATTAAAATAACAGATGTGAAAGTAAAGCAGAAGCACCCGTC
TTCCTTCTTCCCAGAAAACCAGCCTGTGTTTACAAACAGAAGAGAAGGAAGCCACAGTGG
CACTTTTCACATTATTTATTTTGTATCTTTACTGGAGCTGAAATTTACACTGGAATGTCA
TTCTCCAGGGGTGCTGGCATTACCTGTCTGCGGAACAATGAAGGAGGTTGTACTGCTTTG
TGGAATCCTTTTGCAGGAAAAAAGTTTCCTGGTGTCTGTTAATGGCAGTTTTTGTTTCTG
TCTGCCAGTTTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAATCGTGGGACTAAATTTTCTAAACAACCATTTTTAATCTGTTGGAACAAGTTGATTTA
CCAATGAATATTTCAGCATAGACTCTGGGGTGGGAAGGATCCTGGCTGCTTATGGTTTGC
GCACAACTAACAGTTGGGCTCCCTCTGTTGTCCAAGGGCATCCGTGGTCTGGCATGAAGA
CGTGGTCCTTTCTCACCTTGGAACCGGTGCAGAGGTGAAGAGGCAGATTGACTACAAGAA
ACCATTGTCACTTGCCCTGAATTTCCTCATCTGTCACAGGTCATATCTGTGGCCTGTGCT
GAGTCCAGATCTCAGGCACTGCCCCACCTCTCACATGTCACTGGGCCAAATGCAGCAAAT
TCCTGATTTGATAAAGAGTTTTGTTACAGGATAGTGAGAGGAAAGTGGCTTTCCCCATGT
CCCTGGATTCCTCAGGTGCATCTCCTAAGGTGAGGAGGTGATCCAGGAATCCATGGACTT
CCTTAGAAAGTAGTTTGTTCTCCTGCTTTATGAATGGACACAAGATGCTGGATGTCCTTG
GAGAAGAGTTAGGATGAATCTTTGGTGTACCTCATTTTGCATAAATGTATTCCTGAAAAG
CCGCTTTTGAATCAAATTCTCTGCTTTAGGAGAGCACAGTATTTAACGGAACCCTATGGA
GAATCCCTTTACAATGTGAAAAATCGTCTCCTAACTGATTTCTTCTGTCTATGTTTTTCG
ATAACTTGGATTTTTACATATTAAAATAACAGATGTGAAAGTAAAGCAGAAGCACCCGTC
TTCCTTCTTCCCAGAAAACCAGCCTGTGTTTACAAACAGAAGAGAAGGAAGCCACAGTGG
CACTTTTCACATTATTTATTTTGTATCTTTACTGGAGCTGAAATTTACACTGGAATGTCA
TTCTCCAGGGGTGCTGGCATTACCTGTCTGCGGAACAATGAAGGAGGTTGTACTGCTTTG
TGGAATCCTTTTGCAGGAAAAAAGTTTCCTGGTGTCTGTTAATGGCAGTTTTTGTTTCTG
TCTGCCAGTTTG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               200-318, + strand, RNAz p=0.992787

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               200-318, + strand, RNAz p=0.992787

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of M58597, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of M58597, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               4-1032, gnl|bosTau2|chr15 (4882044-4881023)
               

               
               4-1032, gnl|Hg17|chr11 (93918625-93919689)
               

               
               4-1032, gnl|Mm7|chr9 (14586373-14585411)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-1032, gnl|bosTau2|chr15 (4882044-4881023)
               

               
               4-1032, gnl|Hg17|chr11 (93918625-93919689)
               

               
               4-1032, gnl|Mm7|chr9 (14586373-14585411)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               duo (0.345602)
               

               
               col (0.195008)
               

               
               ese (0.126502)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               duo (0.345602)
               

               
               col (0.195008)
               

               
               ese (0.126502)

	4-1032, gnl\|bosTau2\|chr15 (4882044-4881023)
	4-1032, gnl\|Hg17\|chr11 (93918625-93919689)
	4-1032, gnl\|Mm7\|chr9 (14586373-14585411)