Non-Coding RNA Search

Ss1.1-Mixn-0008k10.5

Sequence:


               
               GCTTCTAGACACCTTTGCTTTACAAACAAAAGAATTCGGAGGGAGGGGACAGTAACCGGG
ACTGGAGGGGCTGTCCTTTTTCCCCAGGAGGGGAGATCCAAAGACGAGACCCCTGCCCAG
ACCAGCCAGAAGCCACCCAAAGAAGTTAAGCCTAAAGCCAATGGACCGAATAGCTGATGT
GTTGCCGTTTTCGAAGTTAGAGCCAAACCAGGTTTTGTTCCATTCGGTGAATTCTTTTGC
CCCCCCCCCCCCCGAGATTATTCGCATCATGGTTATGTTTTCAATAAGGACAGACAAGGC
TGATGTTCCCGCGAGGGGTGTGAGCAGAGCCAACCTGGCCTCAGTGGGAGAAGGTTGGGG
CGGGCCCGAGTGGTGCAGCTCAGACAGAGGGTGGGCATCTCCCTGGAGACCTGCGCCATG
GCCACAGGTCGGGTATACGTTGACAGGTCATTACTGTTCAGGGTGGGCATTACTGATCAG
GGCACCGTCGTCCCCTCCCGCCCCGTCCCGCAGTGCTCGCTCGTGACGTGACCTCTCAAT
CCCCCCCCCCCGTGCCCAGACGAAGAGGTGATGGCGGAGGGGGTGCCCTCTCTTTGCTGT
CATCCAATCCCCAGCAAAATTTGGACGTGAGAAACC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTTCTAGACACCTTTGCTTTACAAACAAAAGAATTCGGAGGGAGGGGACAGTAACCGGG
ACTGGAGGGGCTGTCCTTTTTCCCCAGGAGGGGAGATCCAAAGACGAGACCCCTGCCCAG
ACCAGCCAGAAGCCACCCAAAGAAGTTAAGCCTAAAGCCAATGGACCGAATAGCTGATGT
GTTGCCGTTTTCGAAGTTAGAGCCAAACCAGGTTTTGTTCCATTCGGTGAATTCTTTTGC
CCCCCCCCCCCCCGAGATTATTCGCATCATGGTTATGTTTTCAATAAGGACAGACAAGGC
TGATGTTCCCGCGAGGGGTGTGAGCAGAGCCAACCTGGCCTCAGTGGGAGAAGGTTGGGG
CGGGCCCGAGTGGTGCAGCTCAGACAGAGGGTGGGCATCTCCCTGGAGACCTGCGCCATG
GCCACAGGTCGGGTATACGTTGACAGGTCATTACTGTTCAGGGTGGGCATTACTGATCAG
GGCACCGTCGTCCCCTCCCGCCCCGTCCCGCAGTGCTCGCTCGTGACGTGACCTCTCAAT
CCCCCCCCCCCGTGCCCAGACGAAGAGGTGATGGCGGAGGGGGTGCCCTCTCTTTGCTGT
CATCCAATCCCCAGCAAAATTTGGACGTGAGAAACC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               298-415, + strand, RNAz p=0.754789

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               298-415, + strand, RNAz p=0.754789

Homologous human UTR: 1 entry(ies)

More info

Homologous human UTR: 1 entry(ies)

Help | Less info


               
               5' of NM_004992, +

Homologous human UTR: 1 entry(ies)

Help | Less info

Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_004992, +

Aligned organism(s): 14 entry(ies)

More info

Aligned organism(s): 14 entry(ies)

Help | Less info


               
               1-225, gnl|bosTau2|chr7 (6404309-6404083)
               

               
               1-225, gnl|canFam2|chrX (124909333-124909906)
               

               
               1-225, gnl|hg17|chrX (152809208-152809771)
               

               
               1-225, gnl|Hg17|chrX (152809443-152809198)
               

               
               1-225, gnl|loxAfr1|scaffold_39600 (13047-13580)
               

               
               1-225, gnl|mm7|chrX (69414546-69415091)
               

               
               1-225, gnl|Mm7|chrX (69414762-69414536)
               

               
               1-225, gnl|monDom2|scaffold_216 (155350-155995)
               

               
               1-225, gnl|oryCun1|scaffold_135489 (398-972)
               

               
               1-225, gnl|panTro1|chrX (158125629-158126192)
               

               
               1-225, gnl|rheMac2|chrX (152149264-152149827)
               

               
               1-225, gnl|rn3|chrX (160047614-160048161)
               


               
               247-636, gnl|bosTau2|chr7 (6404088-6403706)
               

               
               247-636, gnl|Hg17|chrX (152809233-152808788)

Aligned organism(s): 14 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-225, gnl|bosTau2|chr7 (6404309-6404083)
               

               
               1-225, gnl|canFam2|chrX (124909333-124909906)
               

               
               1-225, gnl|hg17|chrX (152809208-152809771)
               

               
               1-225, gnl|Hg17|chrX (152809443-152809198)
               

               
               1-225, gnl|loxAfr1|scaffold_39600 (13047-13580)
               

               
               1-225, gnl|mm7|chrX (69414546-69415091)
               

               
               1-225, gnl|Mm7|chrX (69414762-69414536)
               

               
               1-225, gnl|monDom2|scaffold_216 (155350-155995)
               

               
               1-225, gnl|oryCun1|scaffold_135489 (398-972)
               

               
               1-225, gnl|panTro1|chrX (158125629-158126192)
               

               
               1-225, gnl|rheMac2|chrX (152149264-152149827)
               

               
               1-225, gnl|rn3|chrX (160047614-160048161)
               


               
               247-636, gnl|bosTau2|chr7 (6404088-6403706)
               

               
               247-636, gnl|Hg17|chrX (152809233-152808788)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               csp (0.161186)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               csp (0.161186)

	1-225, gnl\|bosTau2\|chr7 (6404309-6404083)
	1-225, gnl\|canFam2\|chrX (124909333-124909906)
	1-225, gnl\|hg17\|chrX (152809208-152809771)
	1-225, gnl\|Hg17\|chrX (152809443-152809198)
	1-225, gnl\|loxAfr1\|scaffold_39600 (13047-13580)
	1-225, gnl\|mm7\|chrX (69414546-69415091)
	1-225, gnl\|Mm7\|chrX (69414762-69414536)
	1-225, gnl\|monDom2\|scaffold_216 (155350-155995)
	1-225, gnl\|oryCun1\|scaffold_135489 (398-972)
	1-225, gnl\|panTro1\|chrX (158125629-158126192)
	1-225, gnl\|rheMac2\|chrX (152149264-152149827)
	1-225, gnl\|rn3\|chrX (160047614-160048161)

	247-636, gnl\|bosTau2\|chr7 (6404088-6403706)
	247-636, gnl\|Hg17\|chrX (152809233-152808788)