Non-Coding RNA Search

Ss1.1-Mixn-0008k13.5

Sequence:


               
               AACCAGAATACCAACACAAGAGCAGAAAAATGCTGCCTGAGGACTTTCTTTTCCGAGTCT
TACACTAATTCACTTCCATCAATTTTCACTAAGAAAGTTACTTCGGAAATTTAACCCAAT
CATCGCTAAATGTTCAGTACATTTAAGCTGAAGATAACCTATCTTTGTGATGTTTATATT
TACCGACCCAAAATAATGAAAAACTTTGATCCCTCTTTGCTGGAGGATGGGCTGAGAAGG
GAAATGGGAGAGGGTCTGTACTTTGAAGGTATCCTTTTGAGCTGAGAGGATAGCATACAC
TATTGCAAAAATACTGAGCCATGAAATTTGTTCGGTTATGTAAGATTAAGACAAAAGATT
CCCTCTTTTGCTTTTTACCGTCAAAACCTGTCAAGTAGTGGTCAGTGTTTAGACGAAAGG
TCATAGGAAGAAAAAGCATTTGAAGTTGAGATATAGAGAAAGAAGAAAAAACCCAACATC
AAGGAATCAGAAAAGGCATTATAGCATTTTCACATTCATTGTGCAGTGAAAGGAAAGCAG
AAGGGACATTAAGGGAAAAAGGGCTCCTTGCGTAGTTTTCCCCTCACAGCTCTCGTCTTA
AGAACGCTTAAGGGTCGGTGCGGTCGTTGACTAACCACTTCATTAGGCTCGTCCCACCTT
CAACCTCAAGGCTTTCGCCTTTATAGACGCAACGCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AACCAGAATACCAACACAAGAGCAGAAAAATGCTGCCTGAGGACTTTCTTTTCCGAGTCT
TACACTAATTCACTTCCATCAATTTTCACTAAGAAAGTTACTTCGGAAATTTAACCCAAT
CATCGCTAAATGTTCAGTACATTTAAGCTGAAGATAACCTATCTTTGTGATGTTTATATT
TACCGACCCAAAATAATGAAAAACTTTGATCCCTCTTTGCTGGAGGATGGGCTGAGAAGG
GAAATGGGAGAGGGTCTGTACTTTGAAGGTATCCTTTTGAGCTGAGAGGATAGCATACAC
TATTGCAAAAATACTGAGCCATGAAATTTGTTCGGTTATGTAAGATTAAGACAAAAGATT
CCCTCTTTTGCTTTTTACCGTCAAAACCTGTCAAGTAGTGGTCAGTGTTTAGACGAAAGG
TCATAGGAAGAAAAAGCATTTGAAGTTGAGATATAGAGAAAGAAGAAAAAACCCAACATC
AAGGAATCAGAAAAGGCATTATAGCATTTTCACATTCATTGTGCAGTGAAAGGAAAGCAG
AAGGGACATTAAGGGAAAAAGGGCTCCTTGCGTAGTTTTCCCCTCACAGCTCTCGTCTTA
AGAACGCTTAAGGGTCGGTGCGGTCGTTGACTAACCACTTCATTAGGCTCGTCCCACCTT
CAACCTCAAGGCTTTCGCCTTTATAGACGCAACGCC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               566-696, - strand, RNAz p=0.861661

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               566-696, - strand, RNAz p=0.861661

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-696, gnl|bosTau2|chr4 (12122583-12123286)
               

               
               2-696, gnl|Hg17|chr7 (23343371-23344100)
               

               
               2-696, gnl|Mm7|chr6 (49222677-49223360)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-696, gnl|bosTau2|chr4 (12122583-12123286)
               

               
               2-696, gnl|Hg17|chr7 (23343371-23344100)
               

               
               2-696, gnl|Mm7|chr6 (49222677-49223360)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               cut (0.169924)
               

               
               lun (0.150489)
               

               
               ebs (0.118301)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cut (0.169924)
               

               
               lun (0.150489)
               

               
               ebs (0.118301)

	2-696, gnl\|bosTau2\|chr4 (12122583-12123286)
	2-696, gnl\|Hg17\|chr7 (23343371-23344100)
	2-696, gnl\|Mm7\|chr6 (49222677-49223360)