Ss1.1-Mixn-0008k20.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCTTTGCGTTTTCCGGCTGCTCTTCTGAGCCATGCCTAAGGTAGTGTCCCGGTCAGTAGT TTGCTCCGACACCCGGGACCGGGAGGAATATGACGACGGCGAGAAGCCCCTCCACGTCTA CTACTGTTTGTGCGGCCAGATGGTCCTGGTGTTGGACTGTCAGTTAGAGAAATTACCCAT GAGGCCCCGGGATCGGTCCCGTGTGATTGATGCTGCCAAACACGCCCACAAATTTTGTAA CACAGAAGATGAGGAGACCATGTATCTTCGGAGGCCTGAAGGCATTGAGCGGCAGTACAG GAAGAAGTGTGCAAAGTGTGGACTGCCACTCTTCTACCAGTCCCAGCCAAAAAATGCTCC TGTGACCTTCATTGTGGATGGAGCAGTCGTCAAGTTTGGCCAGGGTTTTGGGAAAACAAA CATATATACTCAGAAACAAGAGCCTCCTAAGAAGGTGATGATGACCAAACGGACTAAAGA CATGGGCAAGTTCAGCTCTGTCACTGTGTCTACTATCGATGAAGAGGAAGAGGAGATCGA GGCTAGGGAAGTTGCCGACTCGTATGCGCAGAATGCCAAGGTGATTGAAAAGCAGCTGGA GCGCAAAGGCATGAGCAAAAGGCGGCTACAGGAGCTGGCGGAACTGGAAGCCAAGAAAGC GAAAATGAAGGGAACCTTGATTGACAACCAGTTCAAGTGATCAGCCCCTTTCTGTGCACC CAGACTGGAGGCAAGCATTTAGATCAGGAGGGAAAAGAGCGTTTTCTCATTTACATGGAC TGGTTCTGATCTTTCTGCCCCAGCAGAAGGCCTTACGTGGCTTCCCAGTGATTCTCCTGC ATTCAGTGAGATCTTTGAGTCCATCTGACCTGCTTTCTAGAGATGCGTTTTTCTCCATCT TTCTGTATATAGGTCTTCTGTACTATTTTTTGTCCATTTGATGTAAACTTCTTCATCTGT ATAGAAGCTCCATGAATAGATCAGTGCTTGAGTGTCTCTAGTTTCTAAAGTAGCTGTTCT TATTCCTTCTTCAAAGTTAATAAAATGTTTAAAGAT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCTTTGCGTTTTCCGGCTGCTCTTCTGAGCCATGCCTAAGGTAGTGTCCCGGTCAGTAGT TTGCTCCGACACCCGGGACCGGGAGGAATATGACGACGGCGAGAAGCCCCTCCACGTCTA CTACTGTTTGTGCGGCCAGATGGTCCTGGTGTTGGACTGTCAGTTAGAGAAATTACCCAT GAGGCCCCGGGATCGGTCCCGTGTGATTGATGCTGCCAAACACGCCCACAAATTTTGTAA CACAGAAGATGAGGAGACCATGTATCTTCGGAGGCCTGAAGGCATTGAGCGGCAGTACAG GAAGAAGTGTGCAAAGTGTGGACTGCCACTCTTCTACCAGTCCCAGCCAAAAAATGCTCC TGTGACCTTCATTGTGGATGGAGCAGTCGTCAAGTTTGGCCAGGGTTTTGGGAAAACAAA CATATATACTCAGAAACAAGAGCCTCCTAAGAAGGTGATGATGACCAAACGGACTAAAGA CATGGGCAAGTTCAGCTCTGTCACTGTGTCTACTATCGATGAAGAGGAAGAGGAGATCGA GGCTAGGGAAGTTGCCGACTCGTATGCGCAGAATGCCAAGGTGATTGAAAAGCAGCTGGA GCGCAAAGGCATGAGCAAAAGGCGGCTACAGGAGCTGGCGGAACTGGAAGCCAAGAAAGC GAAAATGAAGGGAACCTTGATTGACAACCAGTTCAAGTGATCAGCCCCTTTCTGTGCACC CAGACTGGAGGCAAGCATTTAGATCAGGAGGGAAAAGAGCGTTTTCTCATTTACATGGAC TGGTTCTGATCTTTCTGCCCCAGCAGAAGGCCTTACGTGGCTTCCCAGTGATTCTCCTGC ATTCAGTGAGATCTTTGAGTCCATCTGACCTGCTTTCTAGAGATGCGTTTTTCTCCATCT TTCTGTATATAGGTCTTCTGTACTATTTTTTGTCCATTTGATGTAAACTTCTTCATCTGT ATAGAAGCTCCATGAATAGATCAGTGCTTGAGTGTCTCTAGTTTCTAAAGTAGCTGTTCT TATTCCTTCTTCAAAGTTAATAAAATGTTTAAAGAT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 33 entry(ies) | More info |
| Aligned organism(s): 33 entry(ies) | Help | Less info |
| 1-155, gnl|bosTau2|chrX (1017228-1017074) | |
| 1-155, gnl|canFam2|chrX (94664458-94664593) | |
| 1-155, gnl|canFam2|chrX (94664452-94664586) | |
| 1-155, gnl|dasNov1|scaffold_1026 (45465-45600) | |
| 1-155, gnl|dasNov1|scaffold_28988 (51460-51339) | |
| 1-155, gnl|echTel1|scaffold_201070 (2701-2566) | |
| 1-155, gnl|echTel1|scaffold_201070 (2702-2573) | |
| 1-155, gnl|fr1|chrUn (139204505-139204376) | |
| 1-155, gnl|galGal2|chr4 (16295508-16295373) | |
| 1-155, gnl|galGal2|chr4 (16295514-16295380) | |
| 1-155, gnl|hg17|chr8 (37724559-37724694) | |
| 1-155, gnl|hg17|chrX (118481073-118481207) | |
| 1-155, gnl|Hg17|chrX (118481231-118481077) | |
| 1-155, gnl|loxAfr1|scaffold_7448 (795-927) | |
| 1-155, gnl|loxAfr1|scaffold_7448 (789-922) | |
| 1-155, gnl|mm7|chr18 (43548553-43548417) | |
| 1-155, gnl|mm7|chrX (31623768-31623903) | |
| 1-155, gnl|Mm7|chrX (31623926-31623772) | |
| 1-155, gnl|monDom2|scaffold_156 (904838-904971) | |
| 1-155, gnl|oryCun1|scaffold_149536 (3207-3335) | |
| 1-155, gnl|oryCun1|scaffold_149536 (3207-3328) | |
| 1-155, gnl|panTro1|chr7 (38986805-38986940) | |
| 1-155, gnl|panTro1|chr7 (38986804-38986933) | |
| 1-155, gnl|rheMac2|chr8 (38191959-38192085) | |
| 1-155, gnl|rheMac2|chrX (117832048-117832171) | |
| 1-155, gnl|rn3|chrX (8010960-8010824) | |
| 1-155, gnl|rn3|chrX (8010966-8010831) | |
| 1-155, gnl|tetNig1|chr13 (960745-960619) | |
| 1-155, gnl|tetNig1|chr13 (960746-960617) | |
| 1-155, gnl|xenTro1|scaffold_1011 (136389-136529) | |
| 1-155, gnl|xenTro1|scaffold_1011 (136383-136511) | |
| 414-1056, gnl|bosTau2|chr18 (861504-860862) | |
| 414-1056, gnl|Hg17|chr8 (37724283-37723651) |
| Aligned organism(s): 33 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-155, gnl|bosTau2|chrX (1017228-1017074) | |
| 1-155, gnl|canFam2|chrX (94664458-94664593) | |
| 1-155, gnl|canFam2|chrX (94664452-94664586) | |
| 1-155, gnl|dasNov1|scaffold_1026 (45465-45600) | |
| 1-155, gnl|dasNov1|scaffold_28988 (51460-51339) | |
| 1-155, gnl|echTel1|scaffold_201070 (2701-2566) | |
| 1-155, gnl|echTel1|scaffold_201070 (2702-2573) | |
| 1-155, gnl|fr1|chrUn (139204505-139204376) | |
| 1-155, gnl|galGal2|chr4 (16295508-16295373) | |
| 1-155, gnl|galGal2|chr4 (16295514-16295380) | |
| 1-155, gnl|hg17|chr8 (37724559-37724694) | |
| 1-155, gnl|hg17|chrX (118481073-118481207) | |
| 1-155, gnl|Hg17|chrX (118481231-118481077) | |
| 1-155, gnl|loxAfr1|scaffold_7448 (795-927) | |
| 1-155, gnl|loxAfr1|scaffold_7448 (789-922) | |
| 1-155, gnl|mm7|chr18 (43548553-43548417) | |
| 1-155, gnl|mm7|chrX (31623768-31623903) | |
| 1-155, gnl|Mm7|chrX (31623926-31623772) | |
| 1-155, gnl|monDom2|scaffold_156 (904838-904971) | |
| 1-155, gnl|oryCun1|scaffold_149536 (3207-3335) | |
| 1-155, gnl|oryCun1|scaffold_149536 (3207-3328) | |
| 1-155, gnl|panTro1|chr7 (38986805-38986940) | |
| 1-155, gnl|panTro1|chr7 (38986804-38986933) | |
| 1-155, gnl|rheMac2|chr8 (38191959-38192085) | |
| 1-155, gnl|rheMac2|chrX (117832048-117832171) | |
| 1-155, gnl|rn3|chrX (8010960-8010824) | |
| 1-155, gnl|rn3|chrX (8010966-8010831) | |
| 1-155, gnl|tetNig1|chr13 (960745-960619) | |
| 1-155, gnl|tetNig1|chr13 (960746-960617) | |
| 1-155, gnl|xenTro1|scaffold_1011 (136389-136529) | |
| 1-155, gnl|xenTro1|scaffold_1011 (136383-136511) | |
| 414-1056, gnl|bosTau2|chr18 (861504-860862) | |
| 414-1056, gnl|Hg17|chr8 (37724283-37723651) |
| Expressed library(ies): 19 entry(ies) | More info |
| Expressed library(ies): 19 entry(ies) | Help | Less info |
| hea (0.408998) | |
| rec (0.346141) | |
| vin (0.332557) | |
| cov (0.264306) | |
| mgp (0.230681) | |
| cje (0.165235) | |
| tbr (0.154178) | |
| spl (0.143184) | |
| lnt (0.142308) | |
| cst (0.140036) | |
| che (0.136314) | |
| nmm (0.132802) | |
| ova (0.129132) | |
| ret (0.128733) | |
| ese (0.126502) | |
| cly (0.120642) | |
| clu (0.119646) | |
| ecc (0.115035) | |
| cbl (0.114797) |
| Expressed library(ies): 19 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| hea (0.408998) | |
| rec (0.346141) | |
| vin (0.332557) | |
| cov (0.264306) | |
| mgp (0.230681) | |
| cje (0.165235) | |
| tbr (0.154178) | |
| spl (0.143184) | |
| lnt (0.142308) | |
| cst (0.140036) | |
| che (0.136314) | |
| nmm (0.132802) | |
| ova (0.129132) | |
| ret (0.128733) | |
| ese (0.126502) | |
| cly (0.120642) | |
| clu (0.119646) | |
| ecc (0.115035) | |
| cbl (0.114797) |