Non-Coding RNA Search

Ss1.1-Mixn-0008l22.5

Sequence:


               
               ATGGACGGGCATGGGCTTGAGAGCAGCATCTTCCTGCGCCGCCGCCGCCTCTGCTGCTGC
CGCCGGGGCTGAGCAGCGCCGCCGCCCCCGGATCTGCCCGCCGCCGCTAGCGCTGCTGCT
GCTGCTGCTGCTCAGCCTCGGGCTGCTCCACGCAGGTGACTGCCAACAGCCAGCCCAGTG
TCGAATCCAGAAATGTACCACGGACTTTGTGTCCCTGACTTCACACCTGAACTCTGCCGT
TGATGGCTTTGACTCTGAGTTTTGCAAGGCTCTGCGTGCCTACGCTGGCTGCACCCAGCG
AACTTCAAAAGCCTGCCGTGGTAATCTAGTGTACCATTCTGCTGTGTTGGGTATCAGTGA
CCTCATGAGCCAGAGGAACTGTTCCAAGGATGGACCCACATCCTCTACCAACCCCGAAGT
AACCCATGACCCTTGTAACTATCACAGCCACGCGGGAGCCCGAGAACACAGGGGAGGGGA
CCAGAACCCTCCCAGTTATCTTTTCTGTGGCTTGTTCGGAGATCCTCACCTTAGAACTTT
CAAGGATCACTTTCAGACGTGCAAAGTGGAAGGGGCCTGGCCACTTATAGATAATAATTA
TCTTTCAGTTCAAGTGACTAATGTGCCTGTGGTCCCTGGATCCAGTGCTACTGCTACAAA
TAAGATCACGATCATCTTCAAAGCCCATCGTGAGTGTACAGATCAGAAAGTATACCAAGC
TGTGACGGATGACCTGCCAGCTGCCTTTGTGGATGGTAGCACCAGCGGCGGGGACGGTGA
CACCAAGAGCCTGCGCATCGTGGAGAGGGAGAGCGGCCGCTACGTGGAGATGCACGCCCG
CTACATAGGGACCACGGTGTTTGTGCGGCAGCTGGGTCGCTACCTGACCCTCGCCATCCG
CATGCCAGAAGACCTGGCCATGTCCTACGAGGAGAGCCAGGACCTGCAGCTGTGTGTGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATGGACGGGCATGGGCTTGAGAGCAGCATCTTCCTGCGCCGCCGCCGCCTCTGCTGCTGC
CGCCGGGGCTGAGCAGCGCCGCCGCCCCCGGATCTGCCCGCCGCCGCTAGCGCTGCTGCT
GCTGCTGCTGCTCAGCCTCGGGCTGCTCCACGCAGGTGACTGCCAACAGCCAGCCCAGTG
TCGAATCCAGAAATGTACCACGGACTTTGTGTCCCTGACTTCACACCTGAACTCTGCCGT
TGATGGCTTTGACTCTGAGTTTTGCAAGGCTCTGCGTGCCTACGCTGGCTGCACCCAGCG
AACTTCAAAAGCCTGCCGTGGTAATCTAGTGTACCATTCTGCTGTGTTGGGTATCAGTGA
CCTCATGAGCCAGAGGAACTGTTCCAAGGATGGACCCACATCCTCTACCAACCCCGAAGT
AACCCATGACCCTTGTAACTATCACAGCCACGCGGGAGCCCGAGAACACAGGGGAGGGGA
CCAGAACCCTCCCAGTTATCTTTTCTGTGGCTTGTTCGGAGATCCTCACCTTAGAACTTT
CAAGGATCACTTTCAGACGTGCAAAGTGGAAGGGGCCTGGCCACTTATAGATAATAATTA
TCTTTCAGTTCAAGTGACTAATGTGCCTGTGGTCCCTGGATCCAGTGCTACTGCTACAAA
TAAGATCACGATCATCTTCAAAGCCCATCGTGAGTGTACAGATCAGAAAGTATACCAAGC
TGTGACGGATGACCTGCCAGCTGCCTTTGTGGATGGTAGCACCAGCGGCGGGGACGGTGA
CACCAAGAGCCTGCGCATCGTGGAGAGGGAGAGCGGCCGCTACGTGGAGATGCACGCCCG
CTACATAGGGACCACGGTGTTTGTGCGGCAGCTGGGTCGCTACCTGACCCTCGCCATCCG
CATGCCAGAAGACCTGGCCATGTCCTACGAGGAGAGCCAGGACCTGCAGCTGTGTGTGAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q8K2P0_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q8K2P0_MOUSE

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               663-933, gnl|bosTau2|chr21 (8147926-8147653)
               

               
               663-933, gnl|canFam2|chr3 (49949722-49949366)
               

               
               663-933, gnl|danRer3|chrUn (64972411-64972763)
               

               
               663-933, gnl|dasNov1|scaffold_3343 (64606-64261)
               

               
               663-933, gnl|echTel1|scaffold_170394 (1259-900)
               

               
               663-933, gnl|fr1|chrUn (63941503-63941151)
               

               
               663-933, gnl|galGal2|chrZ (23400868-23401219)
               

               
               663-933, gnl|hg17|chr15 (91389597-91389958)
               

               
               663-933, gnl|Hg17|chr15 (91389941-91389668)
               

               
               663-933, gnl|loxAfr1|scaffold_33043 (16385-16026)
               

               
               663-933, gnl|mm7|chr7 (69270416-69270055)
               

               
               663-933, gnl|Mm7|chr7 (69270070-69270343)
               

               
               663-933, gnl|monDom2|scaffold_12 (69197733-69197371)
               

               
               663-933, gnl|oryCun1|scaffold_135197 (498-841)
               

               
               663-933, gnl|panTro1|chr16 (92363017-92363378)
               

               
               663-933, gnl|rheMac2|chr7 (72902712-72903073)
               

               
               663-933, gnl|rn3|chr1 (128667507-128667146)
               

               
               663-933, gnl|tetNig1|chrUn_random (137232794-137232442)
               

               
               663-933, gnl|xenTro1|scaffold_71 (2039727-2040082)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               663-933, gnl|bosTau2|chr21 (8147926-8147653)
               

               
               663-933, gnl|canFam2|chr3 (49949722-49949366)
               

               
               663-933, gnl|danRer3|chrUn (64972411-64972763)
               

               
               663-933, gnl|dasNov1|scaffold_3343 (64606-64261)
               

               
               663-933, gnl|echTel1|scaffold_170394 (1259-900)
               

               
               663-933, gnl|fr1|chrUn (63941503-63941151)
               

               
               663-933, gnl|galGal2|chrZ (23400868-23401219)
               

               
               663-933, gnl|hg17|chr15 (91389597-91389958)
               

               
               663-933, gnl|Hg17|chr15 (91389941-91389668)
               

               
               663-933, gnl|loxAfr1|scaffold_33043 (16385-16026)
               

               
               663-933, gnl|mm7|chr7 (69270416-69270055)
               

               
               663-933, gnl|Mm7|chr7 (69270070-69270343)
               

               
               663-933, gnl|monDom2|scaffold_12 (69197733-69197371)
               

               
               663-933, gnl|oryCun1|scaffold_135197 (498-841)
               

               
               663-933, gnl|panTro1|chr16 (92363017-92363378)
               

               
               663-933, gnl|rheMac2|chr7 (72902712-72903073)
               

               
               663-933, gnl|rn3|chr1 (128667507-128667146)
               

               
               663-933, gnl|tetNig1|chrUn_random (137232794-137232442)
               

               
               663-933, gnl|xenTro1|scaffold_71 (2039727-2040082)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               amn (0.417711)
               

               
               ese (0.126502)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               amn (0.417711)
               

               
               ese (0.126502)

	663-933, gnl\|bosTau2\|chr21 (8147926-8147653)
	663-933, gnl\|canFam2\|chr3 (49949722-49949366)
	663-933, gnl\|danRer3\|chrUn (64972411-64972763)
	663-933, gnl\|dasNov1\|scaffold_3343 (64606-64261)
	663-933, gnl\|echTel1\|scaffold_170394 (1259-900)
	663-933, gnl\|fr1\|chrUn (63941503-63941151)
	663-933, gnl\|galGal2\|chrZ (23400868-23401219)
	663-933, gnl\|hg17\|chr15 (91389597-91389958)
	663-933, gnl\|Hg17\|chr15 (91389941-91389668)
	663-933, gnl\|loxAfr1\|scaffold_33043 (16385-16026)
	663-933, gnl\|mm7\|chr7 (69270416-69270055)
	663-933, gnl\|Mm7\|chr7 (69270070-69270343)
	663-933, gnl\|monDom2\|scaffold_12 (69197733-69197371)
	663-933, gnl\|oryCun1\|scaffold_135197 (498-841)
	663-933, gnl\|panTro1\|chr16 (92363017-92363378)
	663-933, gnl\|rheMac2\|chr7 (72902712-72903073)
	663-933, gnl\|rn3\|chr1 (128667507-128667146)
	663-933, gnl\|tetNig1\|chrUn_random (137232794-137232442)
	663-933, gnl\|xenTro1\|scaffold_71 (2039727-2040082)