Non-Coding RNA Search

Ss1.1-Mixn-0008l23.5

Sequence:


               
               TCTGACAATCTTTCCAAATATTAAAATCATTTGAATATGTATGCTGTGATCTCAACACTG
CCCAAACCATCAAGCAATCTTCATATAGTTTGCATTATAAAATCTCATTAAATTCTCCAA
GAAAAAATAAATTACAGAATTTTATTTCCTGACCATGCACCCCCTGGATTCCTGAATTTC
AGTTCAGACTGTAGATGACAAGATAAGCTGCCTTTAGAAATTGTCAACATCTGAATGTTA
AGTCCATTTCCCCATGGAAGAAGCCCTTAGTTCCATGAAGTATGGATTACCATTTGTATT
TTTCACTAACAGTAAATGTATTTTTCTTATTAATTGTTTGCCTTAGGAATGATGAATTAC
ATTTTTTGTTCCTTCTTACCATAAACATCTGCATTCCTCAGCTCAGCCTTCCTTGTATGT
TGTTTCTTTATAAATGGTTGAGCTGCTGATGCAGGTATTGCCAAGCTAACAGTACAAATC
ATTTTAAAGAGGAAGCTGGCGCGTATGGCAGCCGAGGAGCACACTCTGCAGGACACTGGA
CAAGACAGTAAATATTCAACTTTTAATGCTGATTAAAGGAGTATAGGTAAAGAATACGTA
GGTATACATAATTGGTGAGACAAATATTCACTTTATTTATATTTTATATATTATTTTTTT
AATTTGGTAAATACTATCCAGTTTTGTAGTTGTCCTTGTTGATTTGTGTGATATTAAAGT
ATTAGTAATAATTGCCAGGAGACTATCATTAGGGAGGGTTTAGTTGGTTGCTGTTTGGAC
TGGGAGGGATGATTTAAATTTAGTGCTAGAAACAAATTTTAGTGGCTGCACAGTATATCA
TTTGTCAGACAGAAGGTGGCTATAAAGCTACCCTGTAAGTCAGATCAAAGAAGTTCAGAG
GAAGATTAGTAAATATTGAATCAATTAAAAAAACATTTTATTTTCCTAACATCTTAACAT
GTCCTCCCCTTTAGGAGGAAGAACGTGCAAAACGTGAGGAGCTAGAGCGAATACTAGAAG
AGAATAACCGAAAAATTGCAGAAGCACAAGCCAAACTGGCTGAAGAGCAGTTGAGAATTG
TTGAAGAACAAAGAAAGATTCATGAGGAAAGGATGAAACTAGAACAAGAGCGACAGCGTC
AACAAAAAGAAGAACAAAAAATTATCCTGGGCAAGGGGAAGTCCAGGCCAAAACTGTCCT
TCTCATTAAAAACCCAGGATTAAATTGCAAACTCTGAACTTTTTACAAAGAAAAATGGAA
AAACTTTGTATGGTAGCTTCATGTTGAAGTGGTTTTTTTGTTTTGTTTTCGTTTTTTTAA
TTTGGAAAATCTGGAAAGTTAGCTTGTTCTAATAGGGGCTATGCTCTGCAATTCCTTTTT
TCCCCCTCCCTCCCCTTAACTTTCATTAAGTCAAATCCTTATCAGATCATTGCTGTCTTC
TGAAAAGTGATATATTTTCACTGGTTGGATTCTGTGTTAGTGGTCTGAAAAAGAGATCAC
TTTGAAACTGTGGATGATCTGATACGGTTTTTACGGACCCACTGACTTCAGAGTTACACT
CTGTTGACTACATCATAATGCTGGTTTTGCTGACTTTTTGTTTTTTTATATATTTATAAA
AAAAGAAAAAGTTGGTAATTGCATTGGAAGCGCCCAGGGTGTTACTGGACCTTTGTGTGG
TGTCTTGTTAACCAGTGTCTTCGAGATACTGTTGCTCTTGATGTTCCTGACACAGGTAAG
GAAACAGTCGGTCAGCTCTGATACAAAATACACATATACAATTCAGTATTGTCTGTTCAG
TTTGTTTTTATTTCATTGACAAAATCAAACCAGCATTCCCCCTTGTGTAAATAAATGATT
TTGCTGAATAAAGTCAAGTCTTAAATTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCTGACAATCTTTCCAAATATTAAAATCATTTGAATATGTATGCTGTGATCTCAACACTG
CCCAAACCATCAAGCAATCTTCATATAGTTTGCATTATAAAATCTCATTAAATTCTCCAA
GAAAAAATAAATTACAGAATTTTATTTCCTGACCATGCACCCCCTGGATTCCTGAATTTC
AGTTCAGACTGTAGATGACAAGATAAGCTGCCTTTAGAAATTGTCAACATCTGAATGTTA
AGTCCATTTCCCCATGGAAGAAGCCCTTAGTTCCATGAAGTATGGATTACCATTTGTATT
TTTCACTAACAGTAAATGTATTTTTCTTATTAATTGTTTGCCTTAGGAATGATGAATTAC
ATTTTTTGTTCCTTCTTACCATAAACATCTGCATTCCTCAGCTCAGCCTTCCTTGTATGT
TGTTTCTTTATAAATGGTTGAGCTGCTGATGCAGGTATTGCCAAGCTAACAGTACAAATC
ATTTTAAAGAGGAAGCTGGCGCGTATGGCAGCCGAGGAGCACACTCTGCAGGACACTGGA
CAAGACAGTAAATATTCAACTTTTAATGCTGATTAAAGGAGTATAGGTAAAGAATACGTA
GGTATACATAATTGGTGAGACAAATATTCACTTTATTTATATTTTATATATTATTTTTTT
AATTTGGTAAATACTATCCAGTTTTGTAGTTGTCCTTGTTGATTTGTGTGATATTAAAGT
ATTAGTAATAATTGCCAGGAGACTATCATTAGGGAGGGTTTAGTTGGTTGCTGTTTGGAC
TGGGAGGGATGATTTAAATTTAGTGCTAGAAACAAATTTTAGTGGCTGCACAGTATATCA
TTTGTCAGACAGAAGGTGGCTATAAAGCTACCCTGTAAGTCAGATCAAAGAAGTTCAGAG
GAAGATTAGTAAATATTGAATCAATTAAAAAAACATTTTATTTTCCTAACATCTTAACAT
GTCCTCCCCTTTAGGAGGAAGAACGTGCAAAACGTGAGGAGCTAGAGCGAATACTAGAAG
AGAATAACCGAAAAATTGCAGAAGCACAAGCCAAACTGGCTGAAGAGCAGTTGAGAATTG
TTGAAGAACAAAGAAAGATTCATGAGGAAAGGATGAAACTAGAACAAGAGCGACAGCGTC
AACAAAAAGAAGAACAAAAAATTATCCTGGGCAAGGGGAAGTCCAGGCCAAAACTGTCCT
TCTCATTAAAAACCCAGGATTAAATTGCAAACTCTGAACTTTTTACAAAGAAAAATGGAA
AAACTTTGTATGGTAGCTTCATGTTGAAGTGGTTTTTTTGTTTTGTTTTCGTTTTTTTAA
TTTGGAAAATCTGGAAAGTTAGCTTGTTCTAATAGGGGCTATGCTCTGCAATTCCTTTTT
TCCCCCTCCCTCCCCTTAACTTTCATTAAGTCAAATCCTTATCAGATCATTGCTGTCTTC
TGAAAAGTGATATATTTTCACTGGTTGGATTCTGTGTTAGTGGTCTGAAAAAGAGATCAC
TTTGAAACTGTGGATGATCTGATACGGTTTTTACGGACCCACTGACTTCAGAGTTACACT
CTGTTGACTACATCATAATGCTGGTTTTGCTGACTTTTTGTTTTTTTATATATTTATAAA
AAAAGAAAAAGTTGGTAATTGCATTGGAAGCGCCCAGGGTGTTACTGGACCTTTGTGTGG
TGTCTTGTTAACCAGTGTCTTCGAGATACTGTTGCTCTTGATGTTCCTGACACAGGTAAG
GAAACAGTCGGTCAGCTCTGATACAAAATACACATATACAATTCAGTATTGTCTGTTCAG
TTTGTTTTTATTTCATTGACAAAATCAAACCAGCATTCCCCCTTGTGTAAATAAATGATT
TTGCTGAATAAAGTCAAGTCTTAAATTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q5T257_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q5T257_HUMAN

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               358-517, + strand, RNAz p=0.951471
               

               
               835-1029, - strand, RNAz p=0.770208

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               358-517, + strand, RNAz p=0.951471
               

               
               835-1029, - strand, RNAz p=0.770208

Similar Transcript(s): 6 entry(ies)

More info

Similar Transcript(s): 6 entry(ies)

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               358-517, DB458170 RIKEN full-length enriched human cDNA library, testis Homo 
(dbj|DB458170.1|), blast E-value=0, identity=100% 
               

               
               358-517, PLATE2_A10 Rhesus Macaca mulatta cDNA, mRNA sequence (gb|BM423091.1|), 
blast E-value=0, identity=100% 
               

               
               358-517, MMSP0044_C10 MMSP Macaca mulatta cDNA, mRNA sequence (gb|CB552798.1|), 
blast E-value=0, identity=100% 
               

               
               358-517, MMSP0002_A10 MMSP Macaca mulatta cDNA, mRNA sequence (gb|CB553689.1|), 
blast E-value=0, identity=100% 
               

               
               358-517, ILLUMIGEN_MCQ_24247 Katze_MMSP Macaca mulatta cDNA clone 
(gb|CN645604.1|), blast E-value=0, identity=100% 
               

               
               358-517, LIB30320_005_H04_SP6_1 LIB30320 Canis familiaris cDNA clone 
(gb|DN268859.1|), blast E-value=0, identity=100%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               358-517, DB458170 RIKEN full-length enriched human cDNA library, testis Homo 
(dbj|DB458170.1|), blast E-value=0, identity=100% 
               

               
               358-517, PLATE2_A10 Rhesus Macaca mulatta cDNA, mRNA sequence (gb|BM423091.1|), 
blast E-value=0, identity=100% 
               

               
               358-517, MMSP0044_C10 MMSP Macaca mulatta cDNA, mRNA sequence (gb|CB552798.1|), 
blast E-value=0, identity=100% 
               

               
               358-517, MMSP0002_A10 MMSP Macaca mulatta cDNA, mRNA sequence (gb|CB553689.1|), 
blast E-value=0, identity=100% 
               

               
               358-517, ILLUMIGEN_MCQ_24247 Katze_MMSP Macaca mulatta cDNA clone 
(gb|CN645604.1|), blast E-value=0, identity=100% 
               

               
               358-517, LIB30320_005_H04_SP6_1 LIB30320 Canis familiaris cDNA clone 
(gb|DN268859.1|), blast E-value=0, identity=100%

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_018011, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_018011, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-1059, gnl|bosTau2|chr12 (45268475-45267413)
               

               
               2-1059, gnl|Hg17|chr13 (106008453-106007396)
               

               
               2-1059, gnl|Mm7|chr8 (8652307-8651268)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-1059, gnl|bosTau2|chr12 (45268475-45267413)
               

               
               2-1059, gnl|Hg17|chr13 (106008453-106007396)
               

               
               2-1059, gnl|Mm7|chr8 (8652307-8651268)

Expressed library(ies): 46 entry(ies)

More info

Expressed library(ies): 46 entry(ies)

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               spl (0.859107)
               

               
               thg (0.760746)
               

               
               ova (0.645661)
               

               
               aor (0.585823)
               

               
               cbl (0.573987)
               

               
               hlv (0.417769)
               

               
               ste (0.405625)
               

               
               elu (0.385356)
               

               
               fbs (0.350693)
               

               
               mcp (0.341297)
               

               
               fhi (0.339155)
               

               
               eli (0.303628)
               

               
               fat (0.294855)
               

               
               ski (0.29347)
               

               
               nca (0.273748)
               

               
               fce (0.271592)
               

               
               cbe (0.239234)
               

               
               mgp (0.230681)
               

               
               ece (0.229305)
               

               
               mas (0.210305)
               

               
               hea (0.204499)
               

               
               fcc (0.197785)
               

               
               ldo (0.194005)
               

               
               sag (0.182715)
               

               
               fty (0.17584)
               

               
               ill (0.175593)
               

               
               ton (0.1755)
               

               
               sin (0.174948)
               

               
               eye (0.170503)
               

               
               nje (0.16592)
               

               
               cag (0.151194)
               

               
               isp (0.150376)
               

               
               lin (0.145603)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               ssp (0.13552)
               

               
               cov (0.132153)
               

               
               kid (0.129735)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               eep (0.122564)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)
               

               
               med (0.116252)
               

               
               eje (0.0988338)

Expressed library(ies): 46 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spl (0.859107)
               

               
               thg (0.760746)
               

               
               ova (0.645661)
               

               
               aor (0.585823)
               

               
               cbl (0.573987)
               

               
               hlv (0.417769)
               

               
               ste (0.405625)
               

               
               elu (0.385356)
               

               
               fbs (0.350693)
               

               
               mcp (0.341297)
               

               
               fhi (0.339155)
               

               
               eli (0.303628)
               

               
               fat (0.294855)
               

               
               ski (0.29347)
               

               
               nca (0.273748)
               

               
               fce (0.271592)
               

               
               cbe (0.239234)
               

               
               mgp (0.230681)
               

               
               ece (0.229305)
               

               
               mas (0.210305)
               

               
               hea (0.204499)
               

               
               fcc (0.197785)
               

               
               ldo (0.194005)
               

               
               sag (0.182715)
               

               
               fty (0.17584)
               

               
               ill (0.175593)
               

               
               ton (0.1755)
               

               
               sin (0.174948)
               

               
               eye (0.170503)
               

               
               nje (0.16592)
               

               
               cag (0.151194)
               

               
               isp (0.150376)
               

               
               lin (0.145603)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               ssp (0.13552)
               

               
               cov (0.132153)
               

               
               kid (0.129735)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               eep (0.122564)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)
               

               
               med (0.116252)
               

               
               eje (0.0988338)

	358-517, + strand, RNAz p=0.951471
	835-1029, - strand, RNAz p=0.770208

	358-517, DB458170 RIKEN full-length enriched human cDNA library, testis Homo (dbj\|DB458170.1\|), blast E-value=0, identity=100%
	358-517, PLATE2_A10 Rhesus Macaca mulatta cDNA, mRNA sequence (gb\|BM423091.1\|), blast E-value=0, identity=100%
	358-517, MMSP0044_C10 MMSP Macaca mulatta cDNA, mRNA sequence (gb\|CB552798.1\|), blast E-value=0, identity=100%
	358-517, MMSP0002_A10 MMSP Macaca mulatta cDNA, mRNA sequence (gb\|CB553689.1\|), blast E-value=0, identity=100%
	358-517, ILLUMIGEN_MCQ_24247 Katze_MMSP Macaca mulatta cDNA clone (gb\|CN645604.1\|), blast E-value=0, identity=100%
	358-517, LIB30320_005_H04_SP6_1 LIB30320 Canis familiaris cDNA clone (gb\|DN268859.1\|), blast E-value=0, identity=100%

	2-1059, gnl\|bosTau2\|chr12 (45268475-45267413)
	2-1059, gnl\|Hg17\|chr13 (106008453-106007396)
	2-1059, gnl\|Mm7\|chr8 (8652307-8651268)

	spl (0.859107)
	thg (0.760746)
	ova (0.645661)
	aor (0.585823)
	cbl (0.573987)
	hlv (0.417769)
	ste (0.405625)
	elu (0.385356)
	fbs (0.350693)
	mcp (0.341297)
	fhi (0.339155)
	eli (0.303628)
	fat (0.294855)
	ski (0.29347)
	nca (0.273748)
	fce (0.271592)
	cbe (0.239234)
	mgp (0.230681)
	ece (0.229305)
	mas (0.210305)
	hea (0.204499)
	fcc (0.197785)
	ldo (0.194005)
	sag (0.182715)
	fty (0.17584)
	ill (0.175593)
	ton (0.1755)
	sin (0.174948)
	eye (0.170503)
	nje (0.16592)
	cag (0.151194)
	isp (0.150376)
	lin (0.145603)
	lnt (0.142308)
	csk (0.140746)
	ssp (0.13552)
	cov (0.132153)
	kid (0.129735)
	sug (0.127291)
	bla (0.124347)
	tra (0.123092)
	eep (0.122564)
	eru (0.120048)
	ebs (0.118301)
	med (0.116252)
	eje (0.0988338)