Ss1.1-Mixn-0008o02.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TATCACCCTGACGTCTCCAATTATTCGAGAAGAGAACATGAGGGAAGGAGATGTAACCTC GGGTATGGTGAAAGACCCACCGGACGTCTTGGACAGGCAAAAATGCCTTGACGCTCTGGC TGCTCTACGCCACGCTAAGTGGTTCCAGGCTAGAGCTAATGGTCTGCAGTCCTGTGTGAT TATCATACGTATTCTTCGGGACCTCTGTCAGCGAGTTCCAACTTGGTCTGATTTTCCAAG CTGGGCTATGGAGTTATTAGTAGAGAAAGCAATCAGTAGTGCTTCTAGTCCTCAGAGCCC TGGAGATGCACTGAGAAGAGTTTTTGAGTGCATTTCTTCAGGGATTATTCTTAAAGGTAG TCCTGGACTTCTGGATCCTTGTGAAAAGGATCCCTTTGATACCTTGGCAACAATGACTGA CCAGCAACGTGAAGACATCACATCTAGTGCACAGTTTGCATTGAGACTCCTCGCATTCCG CCAGATACACAAAGTTTTAGGCATGGATCCACTACCCCAAATGAGCCAACGTTTTAACAT CCACAACAACAGGAAACGAAGAAGGGATAGTGATGGAGTTGATGGATTTGAAGCTGAGGG GAAAAAAGACAAAAAAGATTATGATAACTTTTAAAAAGTTACTGTAAATCTTCAGTGTTA AAAACAACAGGTGCCCATTTGTTGGCTGTTTTTCATTCATAATAATGTCTACTTTGAAAT AATTGTCAAGAATTTAAAGAATTTCATGGAAGAACCAAGTTTTTCTATGACATAAAAATC TTAATGTACAGTGTTAGGTATTATATGAATGGAAAGACATCCCCCAAAATTGTGCTCCAA CTAGGGGGAAAACAATTGTTCTGATTTTTTTTTCCCATTGCTTTTGTTTTATTTACTGAT TGCCCTAGCTCCCCTGTATTTGTGTCTTTTACTAACTAGTCCTATTAAATCTTTACTGTA TTTAATGCAGTATTTGTGCTTCAGTTGCTATGTGTATTTTGATATTTTTATTTAGAGGTT TTGTTTGCTCCTTGACACTAGTTGTTACTTTGTGTTACAGATATCCTTTGCCCCTTAATA TTTTACAGCAGTACGTTTTTTTGTAACGTGAGACTGCAGAATTTTTTCCTTTTGTTTTAT TATTCTTTTATGTGATGGACTACGACACAAAAAGTTATTCTGCCATTTAAGTGCTCAGAA CTGAATGTTTCTGCAGATCTTGTGGCATTTGTCTCTCTAGTGTGATATATAAAGGTGTAA TTAAGACAGATTTCTGTTAATCTAATCAAGTTTGCTGTTAGTTGTGCATTAGCGGTATAA AAGCTAATATATACTATATGGTCTTGCAACAGTTTTAAAGCCTCTGCATAATTGATAATA AAATGCATGACATTTTTGTTTTTAATAGACTTTTAAAATTATTATTTTAGGTTTGACACA TAGATCTTTGTACAGTTGACTTTTTGACATAGCAAGGCCAAAAATAACTTTCTGAATATT TTTTTCTTCTGCATAAGTGGAAAGGGCATTTTTCATAAATAAGTGGGCTAACCAATATTT TCAAAAGAACTTTATCATTGTGCAACTAACAACAGTAACTAGCCCTTAATTATGAAGACA GTTCCTTACTGGTGTGTGTGAGATTACTCTAGCAACTATTACAGTATAACACAGTTGAAT GATCCCTCCCCCTGCCCCCACACCCAATCACCCAGCTAATTTACAGTTCTATTAACAGTG AGGTCAATAAAGTATTACTGATATAATTTAAGATTATCTGAGAAAAAAAAACAGAAAATT ATTTGGTGTGGCCATCTTACATGCTTATATGTCCTACAAAAAGCTAAATATTCTGGCAGT GGTGTAATGAAAAGTTACATCTTACTGTTAATAATATGTATGCTCTGGTACACAGATGTC ATTTTGTTGTCACAGCACTACAGTGAAATACACAAATAAAAAATTAAATTCAAAAAAAAA CTTACATGTATTATATATTAGAATTGACATCATAAATACTTTTGCTTTGAAATGACTTAT GCTTCAGTAAAACCATACATATTC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TATCACCCTGACGTCTCCAATTATTCGAGAAGAGAACATGAGGGAAGGAGATGTAACCTC GGGTATGGTGAAAGACCCACCGGACGTCTTGGACAGGCAAAAATGCCTTGACGCTCTGGC TGCTCTACGCCACGCTAAGTGGTTCCAGGCTAGAGCTAATGGTCTGCAGTCCTGTGTGAT TATCATACGTATTCTTCGGGACCTCTGTCAGCGAGTTCCAACTTGGTCTGATTTTCCAAG CTGGGCTATGGAGTTATTAGTAGAGAAAGCAATCAGTAGTGCTTCTAGTCCTCAGAGCCC TGGAGATGCACTGAGAAGAGTTTTTGAGTGCATTTCTTCAGGGATTATTCTTAAAGGTAG TCCTGGACTTCTGGATCCTTGTGAAAAGGATCCCTTTGATACCTTGGCAACAATGACTGA CCAGCAACGTGAAGACATCACATCTAGTGCACAGTTTGCATTGAGACTCCTCGCATTCCG CCAGATACACAAAGTTTTAGGCATGGATCCACTACCCCAAATGAGCCAACGTTTTAACAT CCACAACAACAGGAAACGAAGAAGGGATAGTGATGGAGTTGATGGATTTGAAGCTGAGGG GAAAAAAGACAAAAAAGATTATGATAACTTTTAAAAAGTTACTGTAAATCTTCAGTGTTA AAAACAACAGGTGCCCATTTGTTGGCTGTTTTTCATTCATAATAATGTCTACTTTGAAAT AATTGTCAAGAATTTAAAGAATTTCATGGAAGAACCAAGTTTTTCTATGACATAAAAATC TTAATGTACAGTGTTAGGTATTATATGAATGGAAAGACATCCCCCAAAATTGTGCTCCAA CTAGGGGGAAAACAATTGTTCTGATTTTTTTTTCCCATTGCTTTTGTTTTATTTACTGAT TGCCCTAGCTCCCCTGTATTTGTGTCTTTTACTAACTAGTCCTATTAAATCTTTACTGTA TTTAATGCAGTATTTGTGCTTCAGTTGCTATGTGTATTTTGATATTTTTATTTAGAGGTT TTGTTTGCTCCTTGACACTAGTTGTTACTTTGTGTTACAGATATCCTTTGCCCCTTAATA TTTTACAGCAGTACGTTTTTTTGTAACGTGAGACTGCAGAATTTTTTCCTTTTGTTTTAT TATTCTTTTATGTGATGGACTACGACACAAAAAGTTATTCTGCCATTTAAGTGCTCAGAA CTGAATGTTTCTGCAGATCTTGTGGCATTTGTCTCTCTAGTGTGATATATAAAGGTGTAA TTAAGACAGATTTCTGTTAATCTAATCAAGTTTGCTGTTAGTTGTGCATTAGCGGTATAA AAGCTAATATATACTATATGGTCTTGCAACAGTTTTAAAGCCTCTGCATAATTGATAATA AAATGCATGACATTTTTGTTTTTAATAGACTTTTAAAATTATTATTTTAGGTTTGACACA TAGATCTTTGTACAGTTGACTTTTTGACATAGCAAGGCCAAAAATAACTTTCTGAATATT TTTTTCTTCTGCATAAGTGGAAAGGGCATTTTTCATAAATAAGTGGGCTAACCAATATTT TCAAAAGAACTTTATCATTGTGCAACTAACAACAGTAACTAGCCCTTAATTATGAAGACA GTTCCTTACTGGTGTGTGTGAGATTACTCTAGCAACTATTACAGTATAACACAGTTGAAT GATCCCTCCCCCTGCCCCCACACCCAATCACCCAGCTAATTTACAGTTCTATTAACAGTG AGGTCAATAAAGTATTACTGATATAATTTAAGATTATCTGAGAAAAAAAAACAGAAAATT ATTTGGTGTGGCCATCTTACATGCTTATATGTCCTACAAAAAGCTAAATATTCTGGCAGT GGTGTAATGAAAAGTTACATCTTACTGTTAATAATATGTATGCTCTGGTACACAGATGTC ATTTTGTTGTCACAGCACTACAGTGAAATACACAAATAAAAAATTAAATTCAAAAAAAAA CTTACATGTATTATATATTAGAATTGACATCATAAATACTTTTGCTTTGAAATGACTTAT GCTTCAGTAAAACCATACATATTC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
| 244-359, + strand, RNAz p=0.925541 | |
| 244-353, + strand, RNAz p=0.975543 | |
| 838-940, - strand, RNAz p=0.752526 | |
| 1796-1995, - strand, RNAz p=0.988445 |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 244-359, + strand, RNAz p=0.925541 | |
| 244-353, + strand, RNAz p=0.975543 | |
| 838-940, - strand, RNAz p=0.752526 | |
| 1796-1995, - strand, RNAz p=0.988445 |
| Aligned organism(s): 53 entry(ies) | More info |
| Aligned organism(s): 53 entry(ies) | Help | Less info |
| 49-149, gnl|bosTau2|chr20 (26331148-26331048) | |
| 49-149, gnl|canFam2|chr1 (3366465-3366354) | |
| 49-149, gnl|canFam2|chr4 (78297646-78297548) | |
| 49-149, gnl|danRer3|chr5 (50149546-50149445) | |
| 49-149, gnl|danRer3|chr5 (50149545-50149447) | |
| 49-149, gnl|dasNov1|scaffold_34538 (6889-6985) | |
| 49-149, gnl|dasNov1|scaffold_4994 (74799-74701) | |
| 49-149, gnl|echTel1|scaffold_55577 (2962-3059) | |
| 49-149, gnl|echTel1|scaffold_55577 (2963-3061) | |
| 49-149, gnl|fr1|chrUn (60596102-60596203) | |
| 49-149, gnl|fr1|chrUn (60596103-60596201) | |
| 49-149, gnl|galGal2|chrZ_random (9014679-9014778) | |
| 49-149, gnl|galGal2|chrZ_random (9014680-9014778) | |
| 49-149, gnl|hg17|chr5 (32415938-32416036) | |
| 49-149, gnl|Hg17|chr5 (32416037-32415937) | |
| 49-149, gnl|hg17|chrX (61881784-61881885) | |
| 49-149, gnl|loxAfr1|scaffold_169752 (3832-3750) | |
| 49-149, gnl|mm7|chr15 (12230879-12230778) | |
| 49-149, gnl|mm7|chr15 (12230878-12230780) | |
| 49-149, gnl|Mm7|chr15 (12230777-12230877) | |
| 49-149, gnl|monDom2|scaffold_20 (40579450-40579352) | |
| 49-149, gnl|monDom2|scaffold_39 (17244780-17244680) | |
| 49-149, gnl|oryCun1|scaffold_163279 (8739-8638) | |
| 49-149, gnl|oryCun1|scaffold_163279 (8738-8640) | |
| 49-149, gnl|panTro1|chr4 (97731601-97731699) | |
| 49-149, gnl|panTro1|chr4 (97731599-97731697) | |
| 49-149, gnl|rheMac2|chr6 (32475512-32475611) | |
| 49-149, gnl|rheMac2|chr6 (32475513-32475611) | |
| 49-149, gnl|rn3|chr2 (61559925-61559826) | |
| 49-149, gnl|rn3|chr2 (61559924-61559826) | |
| 49-149, gnl|tetNig1|chr12 (12025913-12026013) | |
| 49-149, gnl|tetNig1|chr12 (12025913-12026011) | |
| 49-149, gnl|xenTro1|scaffold_206 (1706851-1706752) | |
| 49-149, gnl|xenTro1|scaffold_206 (1706850-1706752) | |
| 244-359, gnl|bosTau2|chr20 (26317957-26317842) | |
| 244-359, gnl|canFam2|chr1 (3366673-3366600) | |
| 244-359, gnl|dasNov1|scaffold_34538 (6742-6803) | |
| 244-359, gnl|echTel1|scaffold_55111 (211-155) | |
| 244-359, gnl|galGal2|chrZ_random (9010740-9010813) | |
| 244-359, gnl|Hg17|chr5 (32400139-32400024) | |
| 244-359, gnl|hg17|chrX (61881579-61881654) | |
| 244-359, gnl|loxAfr1|scaffold_1393 (36932-36987) | |
| 244-359, gnl|mm7|chr15 (12240699-12240626) | |
| 244-359, gnl|Mm7|chr15 (12240583-12240698) | |
| 244-359, gnl|monDom2|scaffold_20 (40591804-40591710) | |
| 244-359, gnl|oryCun1|scaffold_163279 (8948-8875) | |
| 244-359, gnl|panTro1|chr8 (92579397-92579343) | |
| 244-359, gnl|rheMac2|chr6 (32461237-32461310) | |
| 244-359, gnl|rn3|chr2 (61565090-61565017) | |
| 244-359, gnl|xenTro1|scaffold_206 (1707997-1707916) | |
| 452-2057, gnl|bosTau2|chr20 (26312399-26310784) | |
| 452-2057, gnl|Hg17|chr5 (32391805-32390223) | |
| 452-2057, gnl|Mm7|chr15 (12243918-12245490) |
| Aligned organism(s): 53 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 49-149, gnl|bosTau2|chr20 (26331148-26331048) | |
| 49-149, gnl|canFam2|chr1 (3366465-3366354) | |
| 49-149, gnl|canFam2|chr4 (78297646-78297548) | |
| 49-149, gnl|danRer3|chr5 (50149546-50149445) | |
| 49-149, gnl|danRer3|chr5 (50149545-50149447) | |
| 49-149, gnl|dasNov1|scaffold_34538 (6889-6985) | |
| 49-149, gnl|dasNov1|scaffold_4994 (74799-74701) | |
| 49-149, gnl|echTel1|scaffold_55577 (2962-3059) | |
| 49-149, gnl|echTel1|scaffold_55577 (2963-3061) | |
| 49-149, gnl|fr1|chrUn (60596102-60596203) | |
| 49-149, gnl|fr1|chrUn (60596103-60596201) | |
| 49-149, gnl|galGal2|chrZ_random (9014679-9014778) | |
| 49-149, gnl|galGal2|chrZ_random (9014680-9014778) | |
| 49-149, gnl|hg17|chr5 (32415938-32416036) | |
| 49-149, gnl|Hg17|chr5 (32416037-32415937) | |
| 49-149, gnl|hg17|chrX (61881784-61881885) | |
| 49-149, gnl|loxAfr1|scaffold_169752 (3832-3750) | |
| 49-149, gnl|mm7|chr15 (12230879-12230778) | |
| 49-149, gnl|mm7|chr15 (12230878-12230780) | |
| 49-149, gnl|Mm7|chr15 (12230777-12230877) | |
| 49-149, gnl|monDom2|scaffold_20 (40579450-40579352) | |
| 49-149, gnl|monDom2|scaffold_39 (17244780-17244680) | |
| 49-149, gnl|oryCun1|scaffold_163279 (8739-8638) | |
| 49-149, gnl|oryCun1|scaffold_163279 (8738-8640) | |
| 49-149, gnl|panTro1|chr4 (97731601-97731699) | |
| 49-149, gnl|panTro1|chr4 (97731599-97731697) | |
| 49-149, gnl|rheMac2|chr6 (32475512-32475611) | |
| 49-149, gnl|rheMac2|chr6 (32475513-32475611) | |
| 49-149, gnl|rn3|chr2 (61559925-61559826) | |
| 49-149, gnl|rn3|chr2 (61559924-61559826) | |
| 49-149, gnl|tetNig1|chr12 (12025913-12026013) | |
| 49-149, gnl|tetNig1|chr12 (12025913-12026011) | |
| 49-149, gnl|xenTro1|scaffold_206 (1706851-1706752) | |
| 49-149, gnl|xenTro1|scaffold_206 (1706850-1706752) | |
| 244-359, gnl|bosTau2|chr20 (26317957-26317842) | |
| 244-359, gnl|canFam2|chr1 (3366673-3366600) | |
| 244-359, gnl|dasNov1|scaffold_34538 (6742-6803) | |
| 244-359, gnl|echTel1|scaffold_55111 (211-155) | |
| 244-359, gnl|galGal2|chrZ_random (9010740-9010813) | |
| 244-359, gnl|Hg17|chr5 (32400139-32400024) | |
| 244-359, gnl|hg17|chrX (61881579-61881654) | |
| 244-359, gnl|loxAfr1|scaffold_1393 (36932-36987) | |
| 244-359, gnl|mm7|chr15 (12240699-12240626) | |
| 244-359, gnl|Mm7|chr15 (12240583-12240698) | |
| 244-359, gnl|monDom2|scaffold_20 (40591804-40591710) | |
| 244-359, gnl|oryCun1|scaffold_163279 (8948-8875) | |
| 244-359, gnl|panTro1|chr8 (92579397-92579343) | |
| 244-359, gnl|rheMac2|chr6 (32461237-32461310) | |
| 244-359, gnl|rn3|chr2 (61565090-61565017) | |
| 244-359, gnl|xenTro1|scaffold_206 (1707997-1707916) | |
| 452-2057, gnl|bosTau2|chr20 (26312399-26310784) | |
| 452-2057, gnl|Hg17|chr5 (32391805-32390223) | |
| 452-2057, gnl|Mm7|chr15 (12243918-12245490) |
| Expressed library(ies): 24 entry(ies) | More info |
| Expressed library(ies): 24 entry(ies) | Help | Less info |
| rec (0.519211) | |
| aor (0.390549) | |
| eye (0.341006) | |
| vin (0.332557) | |
| fat (0.294855) | |
| lnt (0.284616) | |
| mgp (0.230681) | |
| fty (0.17584) | |
| ill (0.175593) | |
| fbs (0.175346) | |
| sin (0.174948) | |
| nje (0.16592) | |
| tbr (0.154178) | |
| lun (0.150489) | |
| isp (0.150376) | |
| hyp (0.142837) | |
| nca (0.136874) | |
| tra (0.123092) | |
| eru (0.120048) | |
| cbl (0.114797) | |
| cty (0.10408) | |
| nbm (0.0993246) | |
| jej (0.0989218) | |
| eje (0.0988338) |
| Expressed library(ies): 24 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| rec (0.519211) | |
| aor (0.390549) | |
| eye (0.341006) | |
| vin (0.332557) | |
| fat (0.294855) | |
| lnt (0.284616) | |
| mgp (0.230681) | |
| fty (0.17584) | |
| ill (0.175593) | |
| fbs (0.175346) | |
| sin (0.174948) | |
| nje (0.16592) | |
| tbr (0.154178) | |
| lun (0.150489) | |
| isp (0.150376) | |
| hyp (0.142837) | |
| nca (0.136874) | |
| tra (0.123092) | |
| eru (0.120048) | |
| cbl (0.114797) | |
| cty (0.10408) | |
| nbm (0.0993246) | |
| jej (0.0989218) | |
| eje (0.0988338) |