Non-Coding RNA Search

Ss1.1-Mixn-0008p19.5.5

Sequence:


               
               GCTTAAGAGGAAGCCTAAGATTTACATAAAGTTGGGTGTTTTCACACAACTTTCCCCTGT
TGCTGGGAATACAGGATAAAATTTGCCATTGGGTCAGTGAGCACCATGAGTCTGAGGCTA
GAGTATTTTGGGGAGGAAGGGTTAGGGAAGAAAAGGACATGTGCTAATGTCTATCACAAG
CTTTTTCTCAGTTAGGTTTCCAGGAGAGAATTAAGTCCTAATTCCCTGATGGTACTAATT
TTGGTATGATCCTTTGGAGAATGGGAGGAATAATCACTCAAATCATTTACTGTGTTCTCT
GCTTCAGGTGAGCCCAGGGAGCACATAGGAGTCAATGTTTGTGAGGTAGAGAAATGACTT
ATATAAGCACCTGCAGAACAAATTTAGTATAAAACATATGTTTGCAATTATCTTCAGAGC
TCTTTTAGCATTTAACATGAGTGAAAGGAGCTAGAGCAAAATCATTTTATGATAATATTT
TCTTTTTCTTTGTTTCTAAAGGAATGTAATCGTTACGACTTTATTAGGACTTCACACCTT
TCTTAATAAACCTCAGTACATGTTGAAGACTGGCATGCTGTATATCAAATGCCATCCAGT
TTAACATTATACACAAATGTTTTATTGTCATAAAGAATAAGAATTTCCATCAGCAACCAG
TGGCTAGTAATATAAAGATTTAACTTTAGACTTTCCTTAAATTAACGCAAACAGAGAAAT
TGCTGTAAAAGCAAAGGAATAGTGCCAGGGAAAAAGATGCTGAAGAAAGGAAAGCATTGT
CTATGCTGTTCTGAGCAGTTGGTCATAAAGAGATGTAAGGAGTTCCCATGTGGCTCATTG
GGTTAAGGTTTAGTGTTGTCACTGCCGTTGGTCAGATCAGTGCTGTGGTGTAGGTTTGAT
CCCTTGCCTGGGAACTTCTGCATGCTGGGCGTGTGGCCAAAAAAAAAGGAGGAAGATGTT
TATACTTTTGTTCTTTGGAGTACCAATATTGGGTTTTTAAAAAATAATTTGATAACAGGA
AAGGAGTATGTGTGATTATTTTACTTTTTGATGTTTAAGGGATATTATGTGCAAATTCAG
CCTACTGTAATCATGTGATTTTGCTATTGCTTTTGGCTAACTCCTTTTTTGGAAATGCCG
TTTTTTTAAACAAGGCATATACTTTTTAAAATAGTTGCTATGAATGTATAAATTTAAATT
TCTGAATTAAAATGATATTATTACAAGTGGAGTTAAAATAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTTAAGAGGAAGCCTAAGATTTACATAAAGTTGGGTGTTTTCACACAACTTTCCCCTGT
TGCTGGGAATACAGGATAAAATTTGCCATTGGGTCAGTGAGCACCATGAGTCTGAGGCTA
GAGTATTTTGGGGAGGAAGGGTTAGGGAAGAAAAGGACATGTGCTAATGTCTATCACAAG
CTTTTTCTCAGTTAGGTTTCCAGGAGAGAATTAAGTCCTAATTCCCTGATGGTACTAATT
TTGGTATGATCCTTTGGAGAATGGGAGGAATAATCACTCAAATCATTTACTGTGTTCTCT
GCTTCAGGTGAGCCCAGGGAGCACATAGGAGTCAATGTTTGTGAGGTAGAGAAATGACTT
ATATAAGCACCTGCAGAACAAATTTAGTATAAAACATATGTTTGCAATTATCTTCAGAGC
TCTTTTAGCATTTAACATGAGTGAAAGGAGCTAGAGCAAAATCATTTTATGATAATATTT
TCTTTTTCTTTGTTTCTAAAGGAATGTAATCGTTACGACTTTATTAGGACTTCACACCTT
TCTTAATAAACCTCAGTACATGTTGAAGACTGGCATGCTGTATATCAAATGCCATCCAGT
TTAACATTATACACAAATGTTTTATTGTCATAAAGAATAAGAATTTCCATCAGCAACCAG
TGGCTAGTAATATAAAGATTTAACTTTAGACTTTCCTTAAATTAACGCAAACAGAGAAAT
TGCTGTAAAAGCAAAGGAATAGTGCCAGGGAAAAAGATGCTGAAGAAAGGAAAGCATTGT
CTATGCTGTTCTGAGCAGTTGGTCATAAAGAGATGTAAGGAGTTCCCATGTGGCTCATTG
GGTTAAGGTTTAGTGTTGTCACTGCCGTTGGTCAGATCAGTGCTGTGGTGTAGGTTTGAT
CCCTTGCCTGGGAACTTCTGCATGCTGGGCGTGTGGCCAAAAAAAAAGGAGGAAGATGTT
TATACTTTTGTTCTTTGGAGTACCAATATTGGGTTTTTAAAAAATAATTTGATAACAGGA
AAGGAGTATGTGTGATTATTTTACTTTTTGATGTTTAAGGGATATTATGTGCAAATTCAG
CCTACTGTAATCATGTGATTTTGCTATTGCTTTTGGCTAACTCCTTTTTTGGAAATGCCG
TTTTTTTAAACAAGGCATATACTTTTTAAAATAGTTGCTATGAATGTATAAATTTAAATT
TCTGAATTAAAATGATATTATTACAAGTGGAGTTAAAATAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               138-246, + strand, RNAz p=0.605645

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               138-246, + strand, RNAz p=0.605645

Aligned organism(s): 4 entry(ies)

More info

Aligned organism(s): 4 entry(ies)

Help | Less info


               
               2-423, gnl|bosTau2|chr28 (34709494-34709049)
               

               
               2-423, gnl|Hg17|chr10 (59826606-59827079)
               


               
               965-1214, gnl|bosTau2|chr28 (34708621-34708387)
               

               
               965-1214, gnl|Hg17|chr10 (59828129-59828402)

Aligned organism(s): 4 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-423, gnl|bosTau2|chr28 (34709494-34709049)
               

               
               2-423, gnl|Hg17|chr10 (59826606-59827079)
               


               
               965-1214, gnl|bosTau2|chr28 (34708621-34708387)
               

               
               965-1214, gnl|Hg17|chr10 (59828129-59828402)

Expressed library(ies): 25 entry(ies)

More info

Expressed library(ies): 25 entry(ies)

Help | Less info


               
               kid (0.389206)
               

               
               vin (0.332557)
               

               
               tbr (0.308356)
               

               
               sme (0.305437)
               

               
               ski (0.29347)
               

               
               tra (0.246184)
               

               
               cbe (0.239234)
               

               
               cmu (0.186393)
               

               
               sto (0.179824)
               

               
               sin (0.174948)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               fco (0.157208)
               

               
               lun (0.150489)
               

               
               fat (0.147427)
               

               
               lin (0.145603)
               

               
               pty (0.142714)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               med (0.116252)
               

               
               spc (0.113366)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)

Expressed library(ies): 25 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               kid (0.389206)
               

               
               vin (0.332557)
               

               
               tbr (0.308356)
               

               
               sme (0.305437)
               

               
               ski (0.29347)
               

               
               tra (0.246184)
               

               
               cbe (0.239234)
               

               
               cmu (0.186393)
               

               
               sto (0.179824)
               

               
               sin (0.174948)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               fco (0.157208)
               

               
               lun (0.150489)
               

               
               fat (0.147427)
               

               
               lin (0.145603)
               

               
               pty (0.142714)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               med (0.116252)
               

               
               spc (0.113366)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)

	2-423, gnl\|bosTau2\|chr28 (34709494-34709049)
	2-423, gnl\|Hg17\|chr10 (59826606-59827079)

	965-1214, gnl\|bosTau2\|chr28 (34708621-34708387)
	965-1214, gnl\|Hg17\|chr10 (59828129-59828402)

	kid (0.389206)
	vin (0.332557)
	tbr (0.308356)
	sme (0.305437)
	ski (0.29347)
	tra (0.246184)
	cbe (0.239234)
	cmu (0.186393)
	sto (0.179824)
	sin (0.174948)
	eye (0.170503)
	fhi (0.169578)
	fco (0.157208)
	lun (0.150489)
	fat (0.147427)
	lin (0.145603)
	pty (0.142714)
	ova (0.129132)
	ret (0.128733)
	sug (0.127291)
	bla (0.124347)
	med (0.116252)
	spc (0.113366)
	cty (0.10408)
	jej (0.0989218)