Non-Coding RNA Search

Ss1.1-Mixn-0009b11.5

Sequence:


               
               GACAGGGACAGCTGACTTGGCTGGCTGGGGGAATAAATGGGACACCTCCCTGGCAGAGAA
GGAATCACTCTAGGGCCTCAGCTGGGTCCCCAGATAGGCTTTGTGAGACTGGGGAGTCCT
TCCCTGCCAGTTTTCTCATCTCTCACAGTGTGTCCCCCTCCTCCCAGCCCTGCCCACATA
CATACTCCTCATTTTGGCCTTCAGCATTTCAGGCCTAGCCACCTAGCCACATACCCCATC
CCTAGAGTGCTCTTTTCAACTGGGGAGGGGAAGAGGTGCTGGCTCCTTTCCAGAGATGCT
TCTGTAGACATGAGAGACCCTAGGTACTGCCTTCTCACTCCTGTATCCTCAGGAGAGGAA
AAGGGACCGGGAAGTAAAGGGGGAACCTTAGGACCCCAGGGAATGGACCCTTAGAGACTC
CCATTCCCTCTTCCCCCTCACCAAGTGCCCAGGAGACCCCTGGCTCAGTCCAGCCCAGGG
CCTTGCCCAGTGGCAGGGGAAAGGGGCACCTCACTCCACCTCGAAGTCATTTGACTGTCC
CCATCCACCCCACGGCCCAGATCTTCCACCACGCCTCCGGCTGCCCCTGTCCTCCGTCAC
AGGCAGCAGAGCCGGGCAGCTTTCTTATGCCATTTTCTACACTGTGCTTCATGAGTAGGA
CTTTCTTGCACTAGTTCCTATGACTGAGTCTCCAAGCTGGATTCCTAGTAGTCCCCATCC
CTTCCTCCCTCACCTGGCTATGATTCAGTTGTTGCCCTTTCCTTGCCTCTGTGTTTCGGT
GAGAGTCTCTGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GACAGGGACAGCTGACTTGGCTGGCTGGGGGAATAAATGGGACACCTCCCTGGCAGAGAA
GGAATCACTCTAGGGCCTCAGCTGGGTCCCCAGATAGGCTTTGTGAGACTGGGGAGTCCT
TCCCTGCCAGTTTTCTCATCTCTCACAGTGTGTCCCCCTCCTCCCAGCCCTGCCCACATA
CATACTCCTCATTTTGGCCTTCAGCATTTCAGGCCTAGCCACCTAGCCACATACCCCATC
CCTAGAGTGCTCTTTTCAACTGGGGAGGGGAAGAGGTGCTGGCTCCTTTCCAGAGATGCT
TCTGTAGACATGAGAGACCCTAGGTACTGCCTTCTCACTCCTGTATCCTCAGGAGAGGAA
AAGGGACCGGGAAGTAAAGGGGGAACCTTAGGACCCCAGGGAATGGACCCTTAGAGACTC
CCATTCCCTCTTCCCCCTCACCAAGTGCCCAGGAGACCCCTGGCTCAGTCCAGCCCAGGG
CCTTGCCCAGTGGCAGGGGAAAGGGGCACCTCACTCCACCTCGAAGTCATTTGACTGTCC
CCATCCACCCCACGGCCCAGATCTTCCACCACGCCTCCGGCTGCCCCTGTCCTCCGTCAC
AGGCAGCAGAGCCGGGCAGCTTTCTTATGCCATTTTCTACACTGTGCTTCATGAGTAGGA
CTTTCTTGCACTAGTTCCTATGACTGAGTCTCCAAGCTGGATTCCTAGTAGTCCCCATCC
CTTCCTCCCTCACCTGGCTATGATTCAGTTGTTGCCCTTTCCTTGCCTCTGTGTTTCGGT
GAGAGTCTCTGT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               156-684, - strand, RNAz p=0.999491

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               156-684, - strand, RNAz p=0.999491

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               450-576, - strand, RNAmicro p=0.995671

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               450-576, - strand, RNAmicro p=0.995671

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               274-684, AV602748 Bos taurus kidney fetus Bos taurus cDNA clone E1KI012B04 
(dbj|AV602748.1|), blast E-value=0, identity=91.75% 
               

               
               313-684, BX104103 NCI_CGAP_Brn25 Homo sapiens cDNA clone IMAGp998B026136 ; 
(emb|BX104103.1|), blast E-value=0, identity=93.01% 
               

               
               222-684, 520593 MARC 3BOV Bos taurus cDNA 5', mRNA sequence (gb|BM257088.1|), 
blast E-value=0, identity=93.32% 
               

               
               222-684, 967196 MARC 3BOV Bos taurus cDNA 3', mRNA sequence (gb|CK776053.1|), 
blast E-value=0, identity=93.52% 
               

               
               222-680, DG14-71a2 DG14-muscle Canis familiaris cDNA 3', mRNA sequence 
(gb|CO718816.1|), blast E-value=0, identity=91.3% 
               

               
               228-680, GL-Cf-11926 GLGC-LIB0001-cf Canis familiaris Normalized Mixed 
(gb|DN755130.1|), blast E-value=0, identity=87.64%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               274-684, AV602748 Bos taurus kidney fetus Bos taurus cDNA clone E1KI012B04 
(dbj|AV602748.1|), blast E-value=0, identity=91.75% 
               

               
               313-684, BX104103 NCI_CGAP_Brn25 Homo sapiens cDNA clone IMAGp998B026136 ; 
(emb|BX104103.1|), blast E-value=0, identity=93.01% 
               

               
               222-684, 520593 MARC 3BOV Bos taurus cDNA 5', mRNA sequence (gb|BM257088.1|), 
blast E-value=0, identity=93.32% 
               

               
               222-684, 967196 MARC 3BOV Bos taurus cDNA 3', mRNA sequence (gb|CK776053.1|), 
blast E-value=0, identity=93.52% 
               

               
               222-680, DG14-71a2 DG14-muscle Canis familiaris cDNA 3', mRNA sequence 
(gb|CO718816.1|), blast E-value=0, identity=91.3% 
               

               
               228-680, GL-Cf-11926 GLGC-LIB0001-cf Canis familiaris Normalized Mixed 
(gb|DN755130.1|), blast E-value=0, identity=87.64%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               5-788, gnl|bosTau2|chr15 (5864944-5864162)
               

               
               5-788, gnl|Hg17|chrX (68534481-68535274)
               

               
               5-788, gnl|Mm7|chrX (95175254-95176052)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-788, gnl|bosTau2|chr15 (5864944-5864162)
               

               
               5-788, gnl|Hg17|chrX (68534481-68535274)
               

               
               5-788, gnl|Mm7|chrX (95175254-95176052)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               nlu (0.191681)
               

               
               ill (0.175593)
               

               
               fhi (0.169578)
               

               
               hyp (0.142837)
               

               
               cbr (0.127975)
               

               
               ebs (0.118301)

Expressed library(ies): 6 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nlu (0.191681)
               

               
               ill (0.175593)
               

               
               fhi (0.169578)
               

               
               hyp (0.142837)
               

               
               cbr (0.127975)
               

               
               ebs (0.118301)

	274-684, AV602748 Bos taurus kidney fetus Bos taurus cDNA clone E1KI012B04 (dbj\|AV602748.1\|), blast E-value=0, identity=91.75%
	313-684, BX104103 NCI_CGAP_Brn25 Homo sapiens cDNA clone IMAGp998B026136 ; (emb\|BX104103.1\|), blast E-value=0, identity=93.01%
	222-684, 520593 MARC 3BOV Bos taurus cDNA 5', mRNA sequence (gb\|BM257088.1\|), blast E-value=0, identity=93.32%
	222-684, 967196 MARC 3BOV Bos taurus cDNA 3', mRNA sequence (gb\|CK776053.1\|), blast E-value=0, identity=93.52%
	222-680, DG14-71a2 DG14-muscle Canis familiaris cDNA 3', mRNA sequence (gb\|CO718816.1\|), blast E-value=0, identity=91.3%
	228-680, GL-Cf-11926 GLGC-LIB0001-cf Canis familiaris Normalized Mixed (gb\|DN755130.1\|), blast E-value=0, identity=87.64%

	5-788, gnl\|bosTau2\|chr15 (5864944-5864162)
	5-788, gnl\|Hg17\|chrX (68534481-68535274)
	5-788, gnl\|Mm7\|chrX (95175254-95176052)

	nlu (0.191681)
	ill (0.175593)
	fhi (0.169578)
	hyp (0.142837)
	cbr (0.127975)
	ebs (0.118301)