Non-Coding RNA Search

Ss1.1-Mixn-0009c17.5

Sequence:


               
               GAACTTCTCATCCTGCCCTCTTTTACATCCCTGTTCAGTCCTCCCCTTCATAGAAGCCTC
TTTGACACCCCCAACTTACTGGTGGTTTCTGTTTTACAAAGTAGAATTTATCAGGTTTAA
GTCTTCCTGCTCTAACTGTGAATTAACATATGAATCAGCAGTCCAGACCCTCACTGCATA
TAGGGCCCCTTGAGGGTCTGACTTGAGGAAGGGTGACTTTGCAAGGACTAGTGTGAGTGA
AAAGCACACAGCCATTACCAAGGTACCAGGAGTCTGACAGTGTTCCAGTTCTCTTTGCAG
CATGTGGACTTGACGGTGGCACACCAGGTTTGACTCGGGACTCTGATGTCCACATTGTGC
TGTGCAAGCTCTGCACTGAGAGTTGAGCCTCATAGGGAGGAGCCTGTGTTGGAAAGAGGT
CTTTTTGATCATTGTTTTGTATTGTTCTCTTCTGTGGTGGGTATAACTTCATGCCCTCTT
TTCTGACTTTGCTATTGATTTTGCAGAGTGGAGAATGTTCCTGAGAGCCTTCAGGTCCAA
CCTGCAGTATTATTCTTCATGCTAACCCCAGTTTATCACAACCACATTCTTCTTTTGTCT
GTATTCTCTGAAGGAAGGGTTCATATGCTCTGAATCCTTAGTCCATAGTCCTATATAAAT
GTGTTACAAACAATTGTAATAGATTCTTAGAAATCAGGGTGGAGCTTTTCTTTGAATAGT
TTAGTGAGCAAATTCAGCAGCAAAGTGGGAAGAAATGCTTCTCCATCTAGGAGAGGTCAT
GTTTATCCTCTTATTGCCCAGATTCTGTAGTCACAGTGGTAGAGTAGTCAGTGAGAGGTG
CCATTAACACCCAACAGCCCCTAGACACACAGCATTTCCATGTCTCCTCTCATTAAGGAG
AATCAAAAGAGCATTTTTGCACAGAGAAAAAGGAAAGAGACCCATGAATGTCATCTTTTA
TCTTTTGTTTTCAGTTGGCTGATGTTGGAATTTTTGTTCTTGACATGCACTTGTAAACCA
GTCTTGCCAAGATACAAGTTGTTTTGGTTTTTCACTACAATTACCTCTTGTTCCTCCTGT
CTTGACTGCTGACGTTCCTCAGTGATTCTAATGTCTATTTTATGGGAAGCAGCCTTCCCA
TGGGTTTCCTTTTACACACTGCAGGGCTATCTTTATACTTTAAAAAAAGAAGAAGAAGAA
GAAAACTATCACTACACTCATAGGGGATTTGCAGAAAACCATTTAGCCCACCTTGAGCAA
AAGGTAGATTCCTCATTGTTTTCTTAAGCTCATTGTAATAAAAAGAAGTCTAATTCAGCA
TTATTGTGCTACCTCAAAGGTAAAAATGTTTTAAGATCTTTTCTGGTCCTGAGTTCTACA
CATAGTGTTTGAAATGTCTTTCAATTGGAATTATTTTTAAATCACCGGGGAGAATCTTAT
TTTAACCTGTTTTACACTTGTATTTTAATCTCAGAAGAATAAGTGATTAAAAAGTGATCA
ATTCTTGCTCTGTAGTATTGAACATAGCATTAAATCATTGTTTGCTGTGAACAAGGTTGG
GTTTTTTAAAAAGGAAACTCTAGGGCTCGGCTTTGCTCTTGGTTAATAAAGGCTGACAAA
TCATGTCCGAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAACTTCTCATCCTGCCCTCTTTTACATCCCTGTTCAGTCCTCCCCTTCATAGAAGCCTC
TTTGACACCCCCAACTTACTGGTGGTTTCTGTTTTACAAAGTAGAATTTATCAGGTTTAA
GTCTTCCTGCTCTAACTGTGAATTAACATATGAATCAGCAGTCCAGACCCTCACTGCATA
TAGGGCCCCTTGAGGGTCTGACTTGAGGAAGGGTGACTTTGCAAGGACTAGTGTGAGTGA
AAAGCACACAGCCATTACCAAGGTACCAGGAGTCTGACAGTGTTCCAGTTCTCTTTGCAG
CATGTGGACTTGACGGTGGCACACCAGGTTTGACTCGGGACTCTGATGTCCACATTGTGC
TGTGCAAGCTCTGCACTGAGAGTTGAGCCTCATAGGGAGGAGCCTGTGTTGGAAAGAGGT
CTTTTTGATCATTGTTTTGTATTGTTCTCTTCTGTGGTGGGTATAACTTCATGCCCTCTT
TTCTGACTTTGCTATTGATTTTGCAGAGTGGAGAATGTTCCTGAGAGCCTTCAGGTCCAA
CCTGCAGTATTATTCTTCATGCTAACCCCAGTTTATCACAACCACATTCTTCTTTTGTCT
GTATTCTCTGAAGGAAGGGTTCATATGCTCTGAATCCTTAGTCCATAGTCCTATATAAAT
GTGTTACAAACAATTGTAATAGATTCTTAGAAATCAGGGTGGAGCTTTTCTTTGAATAGT
TTAGTGAGCAAATTCAGCAGCAAAGTGGGAAGAAATGCTTCTCCATCTAGGAGAGGTCAT
GTTTATCCTCTTATTGCCCAGATTCTGTAGTCACAGTGGTAGAGTAGTCAGTGAGAGGTG
CCATTAACACCCAACAGCCCCTAGACACACAGCATTTCCATGTCTCCTCTCATTAAGGAG
AATCAAAAGAGCATTTTTGCACAGAGAAAAAGGAAAGAGACCCATGAATGTCATCTTTTA
TCTTTTGTTTTCAGTTGGCTGATGTTGGAATTTTTGTTCTTGACATGCACTTGTAAACCA
GTCTTGCCAAGATACAAGTTGTTTTGGTTTTTCACTACAATTACCTCTTGTTCCTCCTGT
CTTGACTGCTGACGTTCCTCAGTGATTCTAATGTCTATTTTATGGGAAGCAGCCTTCCCA
TGGGTTTCCTTTTACACACTGCAGGGCTATCTTTATACTTTAAAAAAAGAAGAAGAAGAA
GAAAACTATCACTACACTCATAGGGGATTTGCAGAAAACCATTTAGCCCACCTTGAGCAA
AAGGTAGATTCCTCATTGTTTTCTTAAGCTCATTGTAATAAAAAGAAGTCTAATTCAGCA
TTATTGTGCTACCTCAAAGGTAAAAATGTTTTAAGATCTTTTCTGGTCCTGAGTTCTACA
CATAGTGTTTGAAATGTCTTTCAATTGGAATTATTTTTAAATCACCGGGGAGAATCTTAT
TTTAACCTGTTTTACACTTGTATTTTAATCTCAGAAGAATAAGTGATTAAAAAGTGATCA
ATTCTTGCTCTGTAGTATTGAACATAGCATTAAATCATTGTTTGCTGTGAACAAGGTTGG
GTTTTTTAAAAAGGAAACTCTAGGGCTCGGCTTTGCTCTTGGTTAATAAAGGCTGACAAA
TCATGTCCGAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               1163-1270, - strand, RNAz p=0.669409

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1163-1270, - strand, RNAz p=0.669409

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-1631, gnl|bosTau2|chr22 (39242405-39240769)
               

               
               3-1631, gnl|Hg17|chr3 (48760999-48759015)
               

               
               3-1631, gnl|Mm7|chr9 (108458604-108460260)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-1631, gnl|bosTau2|chr22 (39242405-39240769)
               

               
               3-1631, gnl|Hg17|chr3 (48760999-48759015)
               

               
               3-1631, gnl|Mm7|chr9 (108458604-108460260)

Expressed library(ies): 29 entry(ies)

More info

Expressed library(ies): 29 entry(ies)

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               vin (0.665115)
               

               
               tbr (0.616713)
               

               
               amn (0.417711)
               

               
               sme (0.305437)
               

               
               ste (0.270416)
               

               
               pla (0.267344)
               

               
               thg (0.253582)
               

               
               fli (0.202881)
               

               
               ldo (0.194005)
               

               
               mgm (0.180343)
               

               
               sin (0.174948)
               

               
               duo (0.172801)
               

               
               cut (0.169924)
               

               
               nco (0.161734)
               

               
               isp (0.150376)
               

               
               bfe (0.149858)
               

               
               spl (0.143184)
               

               
               hlv (0.139256)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               tra (0.123092)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               cbl (0.114797)
               

               
               spc (0.113366)
               

               
               cty (0.10408)
               

               
               eje (0.0988338)

Expressed library(ies): 29 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               vin (0.665115)
               

               
               tbr (0.616713)
               

               
               amn (0.417711)
               

               
               sme (0.305437)
               

               
               ste (0.270416)
               

               
               pla (0.267344)
               

               
               thg (0.253582)
               

               
               fli (0.202881)
               

               
               ldo (0.194005)
               

               
               mgm (0.180343)
               

               
               sin (0.174948)
               

               
               duo (0.172801)
               

               
               cut (0.169924)
               

               
               nco (0.161734)
               

               
               isp (0.150376)
               

               
               bfe (0.149858)
               

               
               spl (0.143184)
               

               
               hlv (0.139256)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               tra (0.123092)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               cbl (0.114797)
               

               
               spc (0.113366)
               

               
               cty (0.10408)
               

               
               eje (0.0988338)

	3-1631, gnl\|bosTau2\|chr22 (39242405-39240769)
	3-1631, gnl\|Hg17\|chr3 (48760999-48759015)
	3-1631, gnl\|Mm7\|chr9 (108458604-108460260)

	vin (0.665115)
	tbr (0.616713)
	amn (0.417711)
	sme (0.305437)
	ste (0.270416)
	pla (0.267344)
	thg (0.253582)
	fli (0.202881)
	ldo (0.194005)
	mgm (0.180343)
	sin (0.174948)
	duo (0.172801)
	cut (0.169924)
	nco (0.161734)
	isp (0.150376)
	bfe (0.149858)
	spl (0.143184)
	hlv (0.139256)
	ret (0.128733)
	sug (0.127291)
	tra (0.123092)
	pgl (0.118483)
	ebs (0.118301)
	med (0.116252)
	ecc (0.115035)
	cbl (0.114797)
	spc (0.113366)
	cty (0.10408)
	eje (0.0988338)