Non-Coding RNA Search

Ss1.1-Mixn-0009d09.5

Sequence:


               
               GTTTTTCTTCCTCCAGACCTTTGCTTTTATACTCTCTTTTGCTTTTATTGGGGTGGGGTT
GGGAACGCGGTCACGCCTTCATGGGGCAGCATTTTAAACCTCTGCCGAAACTGCAGATGG
ACCTACACGTTCTTGTGCCCCGTCCGACTTGAGGTCACAGCCATCAACCGTTTGTATCCT
TGACCTTTTTTGTGTGTTCGAAACGTGTGTACGTGTGTTTGAGGTCACCTCAAGTGTTTT
GAAGACTTTCTTGGTTTTATTGCATTAAAGTCCCGTCCCTCTTGGCTTTGTTCTCATTAA
GAAATATACAAGGAGCTTTACAGCTTTTTTTCCGTCTCCCTTTCTCTTAATGTAAAACTT
TCTTGCAGTTGTTGATATATACTTCTTAGGAAAGATTCCCATTTACTCTGTCCATTCCAT
CTTGGAAAAAAAACGTACTTTGTGCTTTGCGGCGGAACCGAGACACACGTGAGCAGCCCT
GCTCGTATTTGGAGCCGTGCGGCACCGTCTCATGGAGCTCATCATCCCCGTGGCTCTGTC
TTCCCCAAGGCTGTGTGGCTGGAGACACTGTCTCTTGGTGTCACTGGGCAGTGTCCCTGA
ATATTGTATTTGTGGGGGGCAGGTGGGGAGCGTGGCATTTGTCCCCCAGCTTGCGGCTCC
TGTGTTATCTCGTTGGCGTGGGGGGGACCGTGAACTTCTCGAGGTCTCCTTGACGTCCTC
AGTAATAGGTTATCTGTGATCCTCATGGCAAGTGTTCACCAGGACAGCACTTTTTGATTA
GAGGGAAGCTCTGGTACAGAGCTTGAATGTAGCAGGAACTCCCAGATGATTTAAATTCTT
GATCCTGTGATGACACGTGATCCTGCGTGATTTGAGCGGTTCAACTTTCATTGTCTGCCA
GCGTGGCTTGTCGCTGTTGCCCAATAAAGCTTGTGTACTTTCTGCCTTGGGGGATCATTT
TAATTTGTGCAGAAACATGAAATTCTGGTGTCAAAATGAGGGCTTTTTCTTACAGTGCTC
CTGTTTTGTGTGTATCTCATGGTACGTAAACTGTAAATAGCTTTTTCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTTTTCTTCCTCCAGACCTTTGCTTTTATACTCTCTTTTGCTTTTATTGGGGTGGGGTT
GGGAACGCGGTCACGCCTTCATGGGGCAGCATTTTAAACCTCTGCCGAAACTGCAGATGG
ACCTACACGTTCTTGTGCCCCGTCCGACTTGAGGTCACAGCCATCAACCGTTTGTATCCT
TGACCTTTTTTGTGTGTTCGAAACGTGTGTACGTGTGTTTGAGGTCACCTCAAGTGTTTT
GAAGACTTTCTTGGTTTTATTGCATTAAAGTCCCGTCCCTCTTGGCTTTGTTCTCATTAA
GAAATATACAAGGAGCTTTACAGCTTTTTTTCCGTCTCCCTTTCTCTTAATGTAAAACTT
TCTTGCAGTTGTTGATATATACTTCTTAGGAAAGATTCCCATTTACTCTGTCCATTCCAT
CTTGGAAAAAAAACGTACTTTGTGCTTTGCGGCGGAACCGAGACACACGTGAGCAGCCCT
GCTCGTATTTGGAGCCGTGCGGCACCGTCTCATGGAGCTCATCATCCCCGTGGCTCTGTC
TTCCCCAAGGCTGTGTGGCTGGAGACACTGTCTCTTGGTGTCACTGGGCAGTGTCCCTGA
ATATTGTATTTGTGGGGGGCAGGTGGGGAGCGTGGCATTTGTCCCCCAGCTTGCGGCTCC
TGTGTTATCTCGTTGGCGTGGGGGGGACCGTGAACTTCTCGAGGTCTCCTTGACGTCCTC
AGTAATAGGTTATCTGTGATCCTCATGGCAAGTGTTCACCAGGACAGCACTTTTTGATTA
GAGGGAAGCTCTGGTACAGAGCTTGAATGTAGCAGGAACTCCCAGATGATTTAAATTCTT
GATCCTGTGATGACACGTGATCCTGCGTGATTTGAGCGGTTCAACTTTCATTGTCTGCCA
GCGTGGCTTGTCGCTGTTGCCCAATAAAGCTTGTGTACTTTCTGCCTTGGGGGATCATTT
TAATTTGTGCAGAAACATGAAATTCTGGTGTCAAAATGAGGGCTTTTTCTTACAGTGCTC
CTGTTTTGTGTGTATCTCATGGTACGTAAACTGTAAATAGCTTTTTCT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               41-158, + strand, RNAz p=0.843169

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               41-158, + strand, RNAz p=0.843169

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of AB014511, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of AB014511, +

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               2-1068, gnl|bosTau2|chr13 (58503869-58504968)
               

               
               2-1068, gnl|Hg17|chr20 (49647697-49646599)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-1068, gnl|bosTau2|chr13 (58503869-58504968)
               

               
               2-1068, gnl|Hg17|chr20 (49647697-49646599)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               cbe (0.239234)
               

               
               spc (0.226732)
               

               
               fbs (0.175346)
               

               
               hyp (0.142837)
               

               
               cst (0.140036)
               

               
               eep (0.122564)
               

               
               ecc (0.115035)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbe (0.239234)
               

               
               spc (0.226732)
               

               
               fbs (0.175346)
               

               
               hyp (0.142837)
               

               
               cst (0.140036)
               

               
               eep (0.122564)
               

               
               ecc (0.115035)

	2-1068, gnl\|bosTau2\|chr13 (58503869-58504968)
	2-1068, gnl\|Hg17\|chr20 (49647697-49646599)

	cbe (0.239234)
	spc (0.226732)
	fbs (0.175346)
	hyp (0.142837)
	cst (0.140036)
	eep (0.122564)
	ecc (0.115035)