Non-Coding RNA Search

Ss1.1-Mixn-0009d14.5

Sequence:


               
               CAGCCCCTTCAAAGGGTCTTGGTCACTGGGGAGGAGACACAGTGTCCCCTCTGGCCAGGG
GTATGTCAGAGAAGGAAAGGTGGGGCTCTTCGTTTTTTTTTTTTTTTTTTTTAAAGGTGC
TTGCTTGTTTAATGTAAATAATAGAAAGCCTTAATATCTTTTCTGTAACACGGAGTAATA
TTTTAATGTCATGTTTTGGATGTACATAATATATTTATAACAAAGCAGCAAGAGTCTACT
TAACCTCAGCTGCCTCGTGTTTCCTGGTTGGCTGGGGGTGTGGGAGTCAGGAACCTGGAG
GGTGAGGCCCCACCCCAAGCCTGGGCGAAGGATGGAGGCTTTGTCATCTGAAACAATCAA
TGCTGACATCTACTCCAAACGCTTCTGGAGGGGACTCATGATTTGGTGAGAAATGTTTTT
CATTCAGGAGATCATGATGGTAGAGTAATGAAGGCTGACCCCTACTGTTGAATTCCTTCA
GCAAATGTTTATTGGCACGTGGTGTGTGCCAGGAGCTGCCCTGGACACGGGGCACAGAAG
GGAACAAACAAGCACTTAACCTGGTGGAGTGGACCTCCTGGGGAGAGAGACAATAAACAT
AAATAAATGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGCCCCTTCAAAGGGTCTTGGTCACTGGGGAGGAGACACAGTGTCCCCTCTGGCCAGGG
GTATGTCAGAGAAGGAAAGGTGGGGCTCTTCGTTTTTTTTTTTTTTTTTTTTAAAGGTGC
TTGCTTGTTTAATGTAAATAATAGAAAGCCTTAATATCTTTTCTGTAACACGGAGTAATA
TTTTAATGTCATGTTTTGGATGTACATAATATATTTATAACAAAGCAGCAAGAGTCTACT
TAACCTCAGCTGCCTCGTGTTTCCTGGTTGGCTGGGGGTGTGGGAGTCAGGAACCTGGAG
GGTGAGGCCCCACCCCAAGCCTGGGCGAAGGATGGAGGCTTTGTCATCTGAAACAATCAA
TGCTGACATCTACTCCAAACGCTTCTGGAGGGGACTCATGATTTGGTGAGAAATGTTTTT
CATTCAGGAGATCATGATGGTAGAGTAATGAAGGCTGACCCCTACTGTTGAATTCCTTCA
GCAAATGTTTATTGGCACGTGGTGTGTGCCAGGAGCTGCCCTGGACACGGGGCACAGAAG
GGAACAAACAAGCACTTAACCTGGTGGAGTGGACCTCCTGGGGAGAGAGACAATAAACAT
AAATAAATGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Aligned organism(s): 1 entry(ies)

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Aligned organism(s): 1 entry(ies)

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               164-322, gnl|bosTau2|chr13 (59733108-59733266)

Aligned organism(s): 1 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               164-322, gnl|bosTau2|chr13 (59733108-59733266)

Expressed library(ies): 13 entry(ies)

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Expressed library(ies): 13 entry(ies)

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               hyp (0.571347)
               

               
               fcc (0.39557)
               

               
               che (0.272628)
               

               
               ssp (0.271039)
               

               
               jej (0.197844)
               

               
               cmu (0.186393)
               

               
               fbs (0.175346)
               

               
               sin (0.174948)
               

               
               cki (0.165235)
               

               
               cst (0.140036)
               

               
               cly (0.120642)
               

               
               spc (0.113366)
               

               
               nbm (0.0993246)

Expressed library(ies): 13 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hyp (0.571347)
               

               
               fcc (0.39557)
               

               
               che (0.272628)
               

               
               ssp (0.271039)
               

               
               jej (0.197844)
               

               
               cmu (0.186393)
               

               
               fbs (0.175346)
               

               
               sin (0.174948)
               

               
               cki (0.165235)
               

               
               cst (0.140036)
               

               
               cly (0.120642)
               

               
               spc (0.113366)
               

               
               nbm (0.0993246)

	hyp (0.571347)
	fcc (0.39557)
	che (0.272628)
	ssp (0.271039)
	jej (0.197844)
	cmu (0.186393)
	fbs (0.175346)
	sin (0.174948)
	cki (0.165235)
	cst (0.140036)
	cly (0.120642)
	spc (0.113366)
	nbm (0.0993246)