Non-Coding RNA Search

Ss1.1-Mixn-0009e04.5

Sequence:


               
               ATCAAAACCACAAGACAAAAAAACTATTGGGCTGTCTCCTACCCTGTCCCCACCACCCTA
CAAACACACACACTTTTTCTTTCCTCTCCCCCCTTCCATCTTTAGAACCCAGTGGAAAAC
ACCAGGGGACTGAGGTTTCAACCCTTTCTTATGATAGGTCATTAGTGCTTTAAGCAAATG
ATATTCGCAGCTTTGACTGCAGCATTAGCAATTAGGAAAAAATTAAGTTCCCTGCGGACA
TATAACTTTGCCATCAGTTTTGATGTGGAAACACTGTGATATATAAATGTTGTTGGACAA
CAGTAGTTTTAAGAGTAAAATATGAAAGGTTTAAAAAGTTGAAAAAAAGCTAGCTAGCTC
TGTCCTTTACTGAGACTTTAACTTTCTCCTTTGTATTTCCATTGTATTAGATAAATAAAT
GTGAATGTAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATCAAAACCACAAGACAAAAAAACTATTGGGCTGTCTCCTACCCTGTCCCCACCACCCTA
CAAACACACACACTTTTTCTTTCCTCTCCCCCCTTCCATCTTTAGAACCCAGTGGAAAAC
ACCAGGGGACTGAGGTTTCAACCCTTTCTTATGATAGGTCATTAGTGCTTTAAGCAAATG
ATATTCGCAGCTTTGACTGCAGCATTAGCAATTAGGAAAAAATTAAGTTCCCTGCGGACA
TATAACTTTGCCATCAGTTTTGATGTGGAAACACTGTGATATATAAATGTTGTTGGACAA
CAGTAGTTTTAAGAGTAAAATATGAAAGGTTTAAAAAGTTGAAAAAAAGCTAGCTAGCTC
TGTCCTTTACTGAGACTTTAACTTTCTCCTTTGTATTTCCATTGTATTAGATAAATAAAT
GTGAATGTAAAA

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               5-432, gnl|bosTau2|chr5 (65122803-65123233)
               

               
               5-432, gnl|Hg17|chr12 (888629-889061)
               

               
               5-432, gnl|Mm7|chr6 (119951257-119950857)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-432, gnl|bosTau2|chr5 (65122803-65123233)
               

               
               5-432, gnl|Hg17|chr12 (888629-889061)
               

               
               5-432, gnl|Mm7|chr6 (119951257-119950857)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               ste (0.405625)
               

               
               cte (0.29274)
               

               
               isp (0.150376)
               

               
               pty (0.142714)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ste (0.405625)
               

               
               cte (0.29274)
               

               
               isp (0.150376)
               

               
               pty (0.142714)

	5-432, gnl\|bosTau2\|chr5 (65122803-65123233)
	5-432, gnl\|Hg17\|chr12 (888629-889061)
	5-432, gnl\|Mm7\|chr6 (119951257-119950857)