Non-Coding RNA Search

Ss1.1-Mixn-0009e06.5

Sequence:


               
               CCCCTCCCCCAATTGCACTGAGAAAAGGAACTGCGGAGTTTTGTCTCCTAGAATAAAGAT
AGAGTTGAGTAGAGAGAAAGGAGAGTGAGAGAGAGACCTATATTATATATTATATATATA
TATATATATACATATATATATATCTCGAGGGAGGAGAGAGTGGGCAGGCGGAGAGCCAGG
AGGAAGCAGGCCAGGGCTGGGGGCGGCGTGGACCTGCACCCTCCCACTGGGGCTACTGTG
GTGAGGGGTCCTGAGGCTGCCACGCCCCCTCTTCCTGCCGGACCCCCACCCTCCGGTGCA
GACGCCCACACCCACACTCGGCCTTTCAGCTCAGGTCCACCTTGGGGGAGGCCCGAGTGG
GGGTCGTGCCTTTGCCCACCCCCATCGCCCCGGGCCCTGCACTTTGATCCAGGCTGGGGC
TAGAATCCCTTCCGTCTGGCCCAGCCAGCTCTGTGGGAGCAGGGGGCCCTGTTCTCTGGG
GGCCTCCCGGGGTACACCCCCAGGGCCCTGATGCACTCACCGAGTCCCCCTCCATCTCCA
CGGACCCTGGGGCGGGGGTCTGGCGGGGGTCTGGCTGGGCTCCCCCTCCTACTCCCGAGG
GTCTGGGGTCCAGCCCAGCCGCCAAGTGACCTTGTCCCAGCTCCCTCTCCCCAGGCTGGG
GTGCGTGTGCGTGTGTTCGTGCCGAGCTTCTGTTTCATATTGCAAATATAAACAAATAAA
GGAAGACAGTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCCTCCCCCAATTGCACTGAGAAAAGGAACTGCGGAGTTTTGTCTCCTAGAATAAAGAT
AGAGTTGAGTAGAGAGAAAGGAGAGTGAGAGAGAGACCTATATTATATATTATATATATA
TATATATATACATATATATATATCTCGAGGGAGGAGAGAGTGGGCAGGCGGAGAGCCAGG
AGGAAGCAGGCCAGGGCTGGGGGCGGCGTGGACCTGCACCCTCCCACTGGGGCTACTGTG
GTGAGGGGTCCTGAGGCTGCCACGCCCCCTCTTCCTGCCGGACCCCCACCCTCCGGTGCA
GACGCCCACACCCACACTCGGCCTTTCAGCTCAGGTCCACCTTGGGGGAGGCCCGAGTGG
GGGTCGTGCCTTTGCCCACCCCCATCGCCCCGGGCCCTGCACTTTGATCCAGGCTGGGGC
TAGAATCCCTTCCGTCTGGCCCAGCCAGCTCTGTGGGAGCAGGGGGCCCTGTTCTCTGGG
GGCCTCCCGGGGTACACCCCCAGGGCCCTGATGCACTCACCGAGTCCCCCTCCATCTCCA
CGGACCCTGGGGCGGGGGTCTGGCGGGGGTCTGGCTGGGCTCCCCCTCCTACTCCCGAGG
GTCTGGGGTCCAGCCCAGCCGCCAAGTGACCTTGTCCCAGCTCCCTCTCCCCAGGCTGGG
GTGCGTGTGCGTGTGTTCGTGCCGAGCTTCTGTTTCATATTGCAAATATAAACAAATAAA
GGAAGACAGTTT

Aligned organism(s): 1 entry(ies)

More info

Aligned organism(s): 1 entry(ies)

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               1-723, gnl|bosTau2|chr18 (52976982-52977689)

Aligned organism(s): 1 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-723, gnl|bosTau2|chr18 (52976982-52977689)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               ese (0.379507)
               

               
               nje (0.16592)
               

               
               nco (0.161734)
               

               
               cag (0.151194)
               

               
               lnt (0.142308)
               

               
               nca (0.136874)
               

               
               ebs (0.118301)
               

               
               eje (0.0988338)

Expressed library(ies): 8 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ese (0.379507)
               

               
               nje (0.16592)
               

               
               nco (0.161734)
               

               
               cag (0.151194)
               

               
               lnt (0.142308)
               

               
               nca (0.136874)
               

               
               ebs (0.118301)
               

               
               eje (0.0988338)

	ese (0.379507)
	nje (0.16592)
	nco (0.161734)
	cag (0.151194)
	lnt (0.142308)
	nca (0.136874)
	ebs (0.118301)
	eje (0.0988338)