Non-Coding RNA Search

Ss1.1-Mixn-0009e13.5

Sequence:


               
               TTTTTTTTTTTTTTTTGTCCAAAATAATTTATTTGCCAGCCTCACAGAAAATACATTGGC
AAGAGAAAAACGGAAGCCCTGGAGGAGCAGACAAGCCTCTCTTTCCTTCTGGCAGCATCC
CTGGGACCCTGCCAGAGAGTGGGGAGCGGGCCGAGGGGTTCCCCAAACCCAGGGTGGATC
CAAGAAGGAAAAGTCTGGACATGGAGGGCTGTCCTGAGTCCTCCTTGCCGTGGGGGCCGA
CCCAGCGGACACCCGGGCACTTGGAGGCGAAGGCTGGAGGCCCCACCCCCTTGGGAGGAA
GGGGTGCGCTGTGTCCCGAGGTGGGAGGCAGGAGATGCTGAGGACGGTAGGTTGGGGGGG
GAGCTGCCGGCTCAGTCGGTCTCTGAGGCAAGGCTCCTGGGCCGGGGCTGAGGCGGGATA
ACTGGGGAAGTGGGGGCCCTGCCTGCAGCTTCGGGGGCCTCTCCCTCCTCTGGGGCTGTC
CCCAGGTCCGCGTCTGCAGGCATGCTCAGAGAGACTGGGCTGGGGGAGGCTGGACCTGGG
GAGGCTGGGCTTGGGGAGGCTGGTGAGGGTCGGCTCTGGCGCCGGGCAGGCTGGGGAGCA
GTGGGGGGCAAGGGGGGTGGCACCGTGGGGGCCCGGAGGCCACTGCCAACCAGGCGGCGG
GGCAGAGCCCGGGGGGTCACTGGACTGCCAGAGCCAGGGGGCGGAGGGGGTGCTGGAGGG
GAGCTGCGGGTGCTGGAGACCTGGGGGGGCGGCATGGTGGGCCGGGCCGGGGCTGGGCGC
TTGGTCCTCCGAGCTGTGTCTTCTGCTGGGGCGGCTGCCTCCGGGGGGTTCTTATTGACC
TTGGGGGAGGTTGGTCTGGGGGGCGCCTCCGATTCCGTCCTTTCCTTGGTAGCCGCTGAA
GCCGGGCCAGGGGCTGGAGCGGGGACAGTGGCCGGGGCAGGCGTGGCCATTGTTGGAAGC
TCCTCAGAAGCAGCCGGCCTGTCGCTGACCTTGTCCTGGGGGGCAGGCGCTGAGAACAGG
CCTGACACGCTAAAGTTGATCTCTCCAGGGAAGAGGGTGTCCGCGTTCTGTATCAGAGCC
TCGACCACACCCACCACCTGGATGGACCACACAGAGGCTGCATCCAGCTGGGCCAGGTCC
CCTTCTTTCTCTGGAGACCACAGCAGGTTGGGCCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTTTTTTTTGTCCAAAATAATTTATTTGCCAGCCTCACAGAAAATACATTGGC
AAGAGAAAAACGGAAGCCCTGGAGGAGCAGACAAGCCTCTCTTTCCTTCTGGCAGCATCC
CTGGGACCCTGCCAGAGAGTGGGGAGCGGGCCGAGGGGTTCCCCAAACCCAGGGTGGATC
CAAGAAGGAAAAGTCTGGACATGGAGGGCTGTCCTGAGTCCTCCTTGCCGTGGGGGCCGA
CCCAGCGGACACCCGGGCACTTGGAGGCGAAGGCTGGAGGCCCCACCCCCTTGGGAGGAA
GGGGTGCGCTGTGTCCCGAGGTGGGAGGCAGGAGATGCTGAGGACGGTAGGTTGGGGGGG
GAGCTGCCGGCTCAGTCGGTCTCTGAGGCAAGGCTCCTGGGCCGGGGCTGAGGCGGGATA
ACTGGGGAAGTGGGGGCCCTGCCTGCAGCTTCGGGGGCCTCTCCCTCCTCTGGGGCTGTC
CCCAGGTCCGCGTCTGCAGGCATGCTCAGAGAGACTGGGCTGGGGGAGGCTGGACCTGGG
GAGGCTGGGCTTGGGGAGGCTGGTGAGGGTCGGCTCTGGCGCCGGGCAGGCTGGGGAGCA
GTGGGGGGCAAGGGGGGTGGCACCGTGGGGGCCCGGAGGCCACTGCCAACCAGGCGGCGG
GGCAGAGCCCGGGGGGTCACTGGACTGCCAGAGCCAGGGGGCGGAGGGGGTGCTGGAGGG
GAGCTGCGGGTGCTGGAGACCTGGGGGGGCGGCATGGTGGGCCGGGCCGGGGCTGGGCGC
TTGGTCCTCCGAGCTGTGTCTTCTGCTGGGGCGGCTGCCTCCGGGGGGTTCTTATTGACC
TTGGGGGAGGTTGGTCTGGGGGGCGCCTCCGATTCCGTCCTTTCCTTGGTAGCCGCTGAA
GCCGGGCCAGGGGCTGGAGCGGGGACAGTGGCCGGGGCAGGCGTGGCCATTGTTGGAAGC
TCCTCAGAAGCAGCCGGCCTGTCGCTGACCTTGTCCTGGGGGGCAGGCGCTGAGAACAGG
CCTGACACGCTAAAGTTGATCTCTCCAGGGAAGAGGGTGTCCGCGTTCTGTATCAGAGCC
TCGACCACACCCACCACCTGGATGGACCACACAGAGGCTGCATCCAGCTGGGCCAGGTCC
CCTTCTTTCTCTGGAGACCACAGCAGGTTGGGCCCC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q9H752_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q9H752_HUMAN

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               84-243, - strand, RNAz p=0.989845
               

               
               438-597, + strand, RNAz p=0.826321

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               84-243, - strand, RNAz p=0.989845
               

               
               438-597, + strand, RNAz p=0.826321

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               418-503, + strand, RNAmicro p=0.999387

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               418-503, + strand, RNAmicro p=0.999387

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               13-784, gnl|bosTau2|chr5 (67305494-67306272)
               

               
               13-784, gnl|Hg17|chr22 (36376545-36375779)
               

               
               13-784, gnl|Mm7|chr15 (78994999-78994291)
               


               
               879-1099, gnl|bosTau2|chr5 (67308952-67309174)
               

               
               879-1099, gnl|Hg17|chr22 (36371233-36370994)
               

               
               879-1099, gnl|Mm7|chr15 (78991465-78991249)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               13-784, gnl|bosTau2|chr5 (67305494-67306272)
               

               
               13-784, gnl|Hg17|chr22 (36376545-36375779)
               

               
               13-784, gnl|Mm7|chr15 (78994999-78994291)
               


               
               879-1099, gnl|bosTau2|chr5 (67308952-67309174)
               

               
               879-1099, gnl|Hg17|chr22 (36371233-36370994)
               

               
               879-1099, gnl|Mm7|chr15 (78991465-78991249)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               cag (0.302389)
               

               
               lnt (0.142308)
               

               
               pla (0.133672)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cag (0.302389)
               

               
               lnt (0.142308)
               

               
               pla (0.133672)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)

	84-243, - strand, RNAz p=0.989845
	438-597, + strand, RNAz p=0.826321

	13-784, gnl\|bosTau2\|chr5 (67305494-67306272)
	13-784, gnl\|Hg17\|chr22 (36376545-36375779)
	13-784, gnl\|Mm7\|chr15 (78994999-78994291)

	879-1099, gnl\|bosTau2\|chr5 (67308952-67309174)
	879-1099, gnl\|Hg17\|chr22 (36371233-36370994)
	879-1099, gnl\|Mm7\|chr15 (78991465-78991249)

	cag (0.302389)
	lnt (0.142308)
	pla (0.133672)
	nbm (0.0993246)
	jej (0.0989218)