Non-Coding RNA Search

Ss1.1-Mixn-0009e20.5

Sequence:


               
               CTTAAGCATGAGTCGCCATGCTCTGTACCATGTGACCTCACAATCCTGGCCACAGATGTT
TAAGTCGGGTAGCATCTTACTCAAGGACAGCCAGTTTCTAGGCTGGCTAGTGGCCTGTTA
GGTCGACTGACATAAGAACTCTACTTCCTAGGGATGGCTTGTGTCAAATGGCAATTGTAT
GAAACAATCAGATCCTTTTTCAGGGAGGCCAAATTTGAGGCATTCGGAAGAAGAGAACAA
TTAATTAGAATTTAGCAAGGCAGAAGTGGTGGTGGATGAGGGGGTGTCAAACTGAACAGT
GAAAGCAAGGAGAAAGCTGCAGAAACCATGAGACATAAGAATGTGGGGCCACAAGGTAGC
AGAAGCCATGAAGCAGCAAGACAATGGGCCAGAAGGACACACAAGCCATGAAGCAATAGG
AGCCATGATGTAGCAGTAGCCGTGAGGAACAGAAACCATGAAACAAAACCCTGAATCTGT
GAGATCCACAAAGCAGCAGAAGGCTTGAACAGACAAGATCCACGAGGCAGCAGAAGCGAT
GAGACTGCAAGAGCCACAAGATAGCTGGAACTGTGTGGCAGCACGGCAACAGGAATCAAA
GAGGCAGCAGGATATACAAGGCAAGCAGAAGTTACAGCACAGAGAAGCCCTGGATCCATT
GGAACTGAAGCCCCAGAAGCCAGGAAGCTGCAGGAGCCAGGAGGCCCAGAAGCTGTGAGG
CTCCAAAGGCCATAGGCTAGCGAAGAAGAGAGCAGAGAGAAAGTAGTCAGTAGCAGTAGG
AGGAGTATAAATACAGCCAGAAAGAAGTTGAGTCACCATTTTGGGAAGCACTAGAGAAGG
GAGCAACAGATGCCTGCAGCTGAGGGGGTGAAAAGATAAGCCAGGCTCTAGAGCTGCTTT
GGATCATGAACCATTTTCAAGTTTCTGTTCTGTGAGGCTGCCTGTGTAGCTGTTTTTGTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTAAGCATGAGTCGCCATGCTCTGTACCATGTGACCTCACAATCCTGGCCACAGATGTT
TAAGTCGGGTAGCATCTTACTCAAGGACAGCCAGTTTCTAGGCTGGCTAGTGGCCTGTTA
GGTCGACTGACATAAGAACTCTACTTCCTAGGGATGGCTTGTGTCAAATGGCAATTGTAT
GAAACAATCAGATCCTTTTTCAGGGAGGCCAAATTTGAGGCATTCGGAAGAAGAGAACAA
TTAATTAGAATTTAGCAAGGCAGAAGTGGTGGTGGATGAGGGGGTGTCAAACTGAACAGT
GAAAGCAAGGAGAAAGCTGCAGAAACCATGAGACATAAGAATGTGGGGCCACAAGGTAGC
AGAAGCCATGAAGCAGCAAGACAATGGGCCAGAAGGACACACAAGCCATGAAGCAATAGG
AGCCATGATGTAGCAGTAGCCGTGAGGAACAGAAACCATGAAACAAAACCCTGAATCTGT
GAGATCCACAAAGCAGCAGAAGGCTTGAACAGACAAGATCCACGAGGCAGCAGAAGCGAT
GAGACTGCAAGAGCCACAAGATAGCTGGAACTGTGTGGCAGCACGGCAACAGGAATCAAA
GAGGCAGCAGGATATACAAGGCAAGCAGAAGTTACAGCACAGAGAAGCCCTGGATCCATT
GGAACTGAAGCCCCAGAAGCCAGGAAGCTGCAGGAGCCAGGAGGCCCAGAAGCTGTGAGG
CTCCAAAGGCCATAGGCTAGCGAAGAAGAGAGCAGAGAGAAAGTAGTCAGTAGCAGTAGG
AGGAGTATAAATACAGCCAGAAAGAAGTTGAGTCACCATTTTGGGAAGCACTAGAGAAGG
GAGCAACAGATGCCTGCAGCTGAGGGGGTGAAAAGATAAGCCAGGCTCTAGAGCTGCTTT
GGATCATGAACCATTTTCAAGTTTCTGTTCTGTGAGGCTGCCTGTGTAGCTGTTTTTGTC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               750-869, - strand, RNAz p=0.628831

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               750-869, - strand, RNAz p=0.628831

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               2-960, gnl|bosTau2|chrX (540097-539148)
               

               
               2-960, gnl|Hg17|chrX (53285062-53284135)
               

               
               2-960, gnl|Mm7|chrX (146825651-146826757)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-960, gnl|bosTau2|chrX (540097-539148)
               

               
               2-960, gnl|Hg17|chrX (53285062-53284135)
               

               
               2-960, gnl|Mm7|chrX (146825651-146826757)

Expressed library(ies): 7 entry(ies)

More info

Expressed library(ies): 7 entry(ies)

Help | Less info


               
               cbe (0.239234)
               

               
               eye (0.170503)
               

               
               pla (0.133672)
               

               
               ute (0.132784)
               

               
               ova (0.129132)
               

               
               tra (0.123092)
               

               
               med (0.116252)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbe (0.239234)
               

               
               eye (0.170503)
               

               
               pla (0.133672)
               

               
               ute (0.132784)
               

               
               ova (0.129132)
               

               
               tra (0.123092)
               

               
               med (0.116252)

	2-960, gnl\|bosTau2\|chrX (540097-539148)
	2-960, gnl\|Hg17\|chrX (53285062-53284135)
	2-960, gnl\|Mm7\|chrX (146825651-146826757)

	cbe (0.239234)
	eye (0.170503)
	pla (0.133672)
	ute (0.132784)
	ova (0.129132)
	tra (0.123092)
	med (0.116252)