Ss1.1-Mixn-0009f19.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AAAGTTGACCAGCCTCCAGAAGCTAAAAAACCCAAAATAAAGGTGGTGAATGTTGAGCTA CCTATTGAAGCCAACTTGGTCTGGCAGTTAGGGAAAGATCTTCTTAACATGTATATTGAA ACAGAAGGCAAGATGATAATGCAGGATAAATTGGAAAAGGAAAGAAACGATGCGAAGAAT GCAGTTGAGGAATATGTGTATGAGTTCAGGGACAAGCTGTGTGGACCATACGAAAAATTT ATATGTGAGCAGGATCATCAGAATTTTTTGAGATTGCTCACAGAGACTGAGAACTGGCTC TATGAAGAAGGAGAGGACCAGGCCAAACAAGCATATGTTGACAAGTTGGAAGAATTAATG AAAATTGGCACTCCAATTAAAATCCGGTTTCAGGAAGCTGAAGAACGGCCAAAAGTGTTT GAAGAACTGGGACAGAGGCTGCAGCACTATGCCAAGATAGCAGCTGACTTTAGAAATAAT GATGAGAAATACAACCATATTGATGAGTCTGAAATGAAGAAGGTTGAGAAGTCTGTTAAT GAAGCGATGGAGTGGATGAATAATGTCATGAACGCTCAGGCTAAAAAGAGTCTTGATCAG GATCCTGTGGTACGTGCTCAGGAAATCAGAGCAAAAATAAAGGAGTTGAATAACACTTGT GAACCCGTCGTAACACAACCCAAACCAAAAATCGAGTCACCCAAAGTGGAGAGAACTCCA AATGGCCCGAGTACTGATAAAAAGGAAGAGGACTTGGAAGGCAAAAACAATTTCAATGCT GAACCTCCTCACCAGAATGGAGAATGTTACCCTAATGAGAAGAATTCCATTAATATGGAC TTGGACTAGATGACATTAAACTGGTTTAGTCCTTCAATTAATAAAATATTTTTGCCATAG TATGTGATTCTACATAACATACTGAGACTATTTATATTTTCTTTTTTAAGGATGTCTAGA AATTTTGTGTATTATATGGAAAAAGAAAAAGCTTAAGTCTGTAGTCTTTATGATCCTAAA AGGGAAAATTGCCTTGGTAACTTTCAGATTCCTGTGGAATTGTGAATTCATACTAAGCTT CTGTGCAGTATTGCCATTTGCATCACTGAGGATGAAATTGACTTTTGTCTTTGGAGAAAA TAAAACAAACTGTACTGCTTGTTCAAGAGGGCTGTGATTAAGCATTTGTTCCTGCCAAGG TAGTTTTCTTGCATTTTGCTCTCCATTTCAGCATGTGTGTGGGTGTGGATGTTTATAAAC AAGACTAAGTCTGATTTCATAAGGGCTTTCTAAAATTAACTCTGTCCAAAAGAATAAGAC TTTTCGCTTTGATAATATTAAAAATCCAATGACGCAAAAGCTAGTGAAATGTGTTAGCAG CATGCAGAACAAAACCTTTTAAAATACATCTCTTGTTATACAGTGCGTTGTCATGTGAAG GTGTAAAATGGAAGAAACATTTGTTTGTAACTGATATTGTGAAACCTATGAGCTTTAAAA TAAAGTTCATCTTATGGTGTCATTAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AAAGTTGACCAGCCTCCAGAAGCTAAAAAACCCAAAATAAAGGTGGTGAATGTTGAGCTA CCTATTGAAGCCAACTTGGTCTGGCAGTTAGGGAAAGATCTTCTTAACATGTATATTGAA ACAGAAGGCAAGATGATAATGCAGGATAAATTGGAAAAGGAAAGAAACGATGCGAAGAAT GCAGTTGAGGAATATGTGTATGAGTTCAGGGACAAGCTGTGTGGACCATACGAAAAATTT ATATGTGAGCAGGATCATCAGAATTTTTTGAGATTGCTCACAGAGACTGAGAACTGGCTC TATGAAGAAGGAGAGGACCAGGCCAAACAAGCATATGTTGACAAGTTGGAAGAATTAATG AAAATTGGCACTCCAATTAAAATCCGGTTTCAGGAAGCTGAAGAACGGCCAAAAGTGTTT GAAGAACTGGGACAGAGGCTGCAGCACTATGCCAAGATAGCAGCTGACTTTAGAAATAAT GATGAGAAATACAACCATATTGATGAGTCTGAAATGAAGAAGGTTGAGAAGTCTGTTAAT GAAGCGATGGAGTGGATGAATAATGTCATGAACGCTCAGGCTAAAAAGAGTCTTGATCAG GATCCTGTGGTACGTGCTCAGGAAATCAGAGCAAAAATAAAGGAGTTGAATAACACTTGT GAACCCGTCGTAACACAACCCAAACCAAAAATCGAGTCACCCAAAGTGGAGAGAACTCCA AATGGCCCGAGTACTGATAAAAAGGAAGAGGACTTGGAAGGCAAAAACAATTTCAATGCT GAACCTCCTCACCAGAATGGAGAATGTTACCCTAATGAGAAGAATTCCATTAATATGGAC TTGGACTAGATGACATTAAACTGGTTTAGTCCTTCAATTAATAAAATATTTTTGCCATAG TATGTGATTCTACATAACATACTGAGACTATTTATATTTTCTTTTTTAAGGATGTCTAGA AATTTTGTGTATTATATGGAAAAAGAAAAAGCTTAAGTCTGTAGTCTTTATGATCCTAAA AGGGAAAATTGCCTTGGTAACTTTCAGATTCCTGTGGAATTGTGAATTCATACTAAGCTT CTGTGCAGTATTGCCATTTGCATCACTGAGGATGAAATTGACTTTTGTCTTTGGAGAAAA TAAAACAAACTGTACTGCTTGTTCAAGAGGGCTGTGATTAAGCATTTGTTCCTGCCAAGG TAGTTTTCTTGCATTTTGCTCTCCATTTCAGCATGTGTGTGGGTGTGGATGTTTATAAAC AAGACTAAGTCTGATTTCATAAGGGCTTTCTAAAATTAACTCTGTCCAAAAGAATAAGAC TTTTCGCTTTGATAATATTAAAAATCCAATGACGCAAAAGCTAGTGAAATGTGTTAGCAG CATGCAGAACAAAACCTTTTAAAATACATCTCTTGTTATACAGTGCGTTGTCATGTGAAG GTGTAAAATGGAAGAAACATTTGTTTGTAACTGATATTGTGAAACCTATGAGCTTTAAAA TAAAGTTCATCTTATGGTGTCATTAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 39 entry(ies) | More info |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
| 122-248, gnl|bosTau2|chr7 (30335146-30335020) | |
| 122-248, gnl|canFam2|chr11 (24362638-24362778) | |
| 122-248, gnl|danRer3|chr21 (39743719-39743860) | |
| 122-248, gnl|dasNov1|scaffold_12428 (42938-42797) | |
| 122-248, gnl|echTel1|scaffold_20262 (1225-1346) | |
| 122-248, gnl|fr1|chrUn (207337544-207337694) | |
| 122-248, gnl|galGal2|chr13 (16185422-16185563) | |
| 122-248, gnl|hg17|chr5 (132460743-132460884) | |
| 122-248, gnl|Hg17|chr5 (132460747-132460873) | |
| 122-248, gnl|loxAfr1|scaffold_849 (36133-35991) | |
| 122-248, gnl|mm7|chr11 (53222817-53222676) | |
| 122-248, gnl|Mm7|chr11 (53222815-53222685) | |
| 122-248, gnl|monDom2|scaffold_6 (92111063-92110923) | |
| 122-248, gnl|oryCun1|scaffold_149675 (280-138) | |
| 122-248, gnl|panTro1|chr4 (138796512-138796653) | |
| 122-248, gnl|rheMac2|chr6 (129497675-129497816) | |
| 122-248, gnl|rn3|chr10 (38718185-38718043) | |
| 122-248, gnl|tetNig1|chr1 (1231776-1231914) | |
| 122-248, gnl|xenTro1|scaffold_473 (952969-953110) | |
| 127-242, gnl|bosTau2|chr17 (18554500-18554615) | |
| 127-242, gnl|canFam2|chr19 (16119088-16118937) | |
| 127-242, gnl|danRer3|chrNA (216186594-216186441) | |
| 127-242, gnl|dasNov1|scaffold_140980 (1574-1726) | |
| 127-242, gnl|echTel1|scaffold_212205 (9092-8949) | |
| 127-242, gnl|fr1|chrUn (69876291-69876442) | |
| 127-242, gnl|galGal2|chr4 (34797348-34797494) | |
| 127-242, gnl|hg17|chr4 (129101526-129101678) | |
| 127-242, gnl|Hg17|chr4 (129101529-129101644) | |
| 127-242, gnl|loxAfr1|scaffold_860 (107040-107191) | |
| 127-242, gnl|mm7|chr3 (40550877-40551018) | |
| 127-242, gnl|Mm7|chr3 (40550880-40550995) | |
| 127-242, gnl|monDom2|scaffold_137 (1246431-1246583) | |
| 127-242, gnl|oryCun1|scaffold_70194 (971-1125) | |
| 127-242, gnl|panTro1|chr3 (145951943-145952095) | |
| 127-242, gnl|rheMac2|chr5 (120139699-120139850) | |
| 127-242, gnl|rn3|chr2 (127691042-127691183) | |
| 127-242, gnl|tetNig1|chr10 (5435090-5434947) | |
| 994-1533, gnl|bosTau2|chr10 (52141003-52140456) | |
| 994-1533, gnl|Hg17|chr13 (30609308-30608755) |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 122-248, gnl|bosTau2|chr7 (30335146-30335020) | |
| 122-248, gnl|canFam2|chr11 (24362638-24362778) | |
| 122-248, gnl|danRer3|chr21 (39743719-39743860) | |
| 122-248, gnl|dasNov1|scaffold_12428 (42938-42797) | |
| 122-248, gnl|echTel1|scaffold_20262 (1225-1346) | |
| 122-248, gnl|fr1|chrUn (207337544-207337694) | |
| 122-248, gnl|galGal2|chr13 (16185422-16185563) | |
| 122-248, gnl|hg17|chr5 (132460743-132460884) | |
| 122-248, gnl|Hg17|chr5 (132460747-132460873) | |
| 122-248, gnl|loxAfr1|scaffold_849 (36133-35991) | |
| 122-248, gnl|mm7|chr11 (53222817-53222676) | |
| 122-248, gnl|Mm7|chr11 (53222815-53222685) | |
| 122-248, gnl|monDom2|scaffold_6 (92111063-92110923) | |
| 122-248, gnl|oryCun1|scaffold_149675 (280-138) | |
| 122-248, gnl|panTro1|chr4 (138796512-138796653) | |
| 122-248, gnl|rheMac2|chr6 (129497675-129497816) | |
| 122-248, gnl|rn3|chr10 (38718185-38718043) | |
| 122-248, gnl|tetNig1|chr1 (1231776-1231914) | |
| 122-248, gnl|xenTro1|scaffold_473 (952969-953110) | |
| 127-242, gnl|bosTau2|chr17 (18554500-18554615) | |
| 127-242, gnl|canFam2|chr19 (16119088-16118937) | |
| 127-242, gnl|danRer3|chrNA (216186594-216186441) | |
| 127-242, gnl|dasNov1|scaffold_140980 (1574-1726) | |
| 127-242, gnl|echTel1|scaffold_212205 (9092-8949) | |
| 127-242, gnl|fr1|chrUn (69876291-69876442) | |
| 127-242, gnl|galGal2|chr4 (34797348-34797494) | |
| 127-242, gnl|hg17|chr4 (129101526-129101678) | |
| 127-242, gnl|Hg17|chr4 (129101529-129101644) | |
| 127-242, gnl|loxAfr1|scaffold_860 (107040-107191) | |
| 127-242, gnl|mm7|chr3 (40550877-40551018) | |
| 127-242, gnl|Mm7|chr3 (40550880-40550995) | |
| 127-242, gnl|monDom2|scaffold_137 (1246431-1246583) | |
| 127-242, gnl|oryCun1|scaffold_70194 (971-1125) | |
| 127-242, gnl|panTro1|chr3 (145951943-145952095) | |
| 127-242, gnl|rheMac2|chr5 (120139699-120139850) | |
| 127-242, gnl|rn3|chr2 (127691042-127691183) | |
| 127-242, gnl|tetNig1|chr10 (5435090-5434947) | |
| 994-1533, gnl|bosTau2|chr10 (52141003-52140456) | |
| 994-1533, gnl|Hg17|chr13 (30609308-30608755) |
| Expressed library(ies): 24 entry(ies) | More info |
| Expressed library(ies): 24 entry(ies) | Help | Less info |
| liv (2.34055) | |
| fco (1.25766) | |
| aor (0.976372) | |
| fcc (0.791139) | |
| ret (0.643666) | |
| pro (0.512033) | |
| lin (0.436808) | |
| amn (0.417711) | |
| tes (0.415628) | |
| cbr (0.383926) | |
| sin (0.349895) | |
| spc (0.340097) | |
| isp (0.300752) | |
| thg (0.253582) | |
| fhi (0.169578) | |
| bfe (0.149858) | |
| ste (0.135208) | |
| pla (0.133672) | |
| kid (0.129735) | |
| ova (0.129132) | |
| bla (0.124347) | |
| tra (0.123092) | |
| pgl (0.118483) | |
| nbm (0.0993246) |
| Expressed library(ies): 24 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| liv (2.34055) | |
| fco (1.25766) | |
| aor (0.976372) | |
| fcc (0.791139) | |
| ret (0.643666) | |
| pro (0.512033) | |
| lin (0.436808) | |
| amn (0.417711) | |
| tes (0.415628) | |
| cbr (0.383926) | |
| sin (0.349895) | |
| spc (0.340097) | |
| isp (0.300752) | |
| thg (0.253582) | |
| fhi (0.169578) | |
| bfe (0.149858) | |
| ste (0.135208) | |
| pla (0.133672) | |
| kid (0.129735) | |
| ova (0.129132) | |
| bla (0.124347) | |
| tra (0.123092) | |
| pgl (0.118483) | |
| nbm (0.0993246) |