Ss1.1-Mixn-0009j12.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGGGCTGTACCTGTGATGATAAGGTAGAGCCAAAGAATAAATTGGAGGAACTCAATAAAC GCCTTCATATAAAAGGGTCTACTGAAGAGAGACACCTCCTTTACGGACGGCCTGCGGTAC TTTATCGGACTAGATATGATATCTTATATCACAATGACTTTGAAAGCGGTTACAGTGAAA TATTCCTAATGCCACTCTGGACATCATACACTGTTTCCAAACAGGCTGAGGTCTCTGGGA TCCCGGAACACCTGACCAGTTGCGTCCGGCCTGATGTCCGTGTTTCTCCGAGTTTCAGTC AGAGCTGTTTGGCCTACAAAAATGATAAACAGATGTCCTATGGATTCCTCTTTCCTCCTT ATCTGAGCTCTTCACCAGAAGCTAAATATGATGCATTCCTTGTAACCAATATGGTTCCCA TGTATCCTGCTTTCAAACGAGTCTGGAATTATTTCCAAAGGGTTCTGGTGAAGAAGTATG CTTCAGAAAGAAATGGAGTGAATGTGATAAGCGGACCTATTTTTGACTATGACTATGATG GCTTACATGATACACAAGACAAAATCAAACAGTATGTGGAGGGCAGTTCTATTCCCATTC CAACGCACTACTACAGCATTGTCACCAGCTGCCTGGATTTCACCCAGCCCGCCGACAAGT GTGATGGCCCCCTCTCCGTCTCCTCATTCATCCTTCCGCACAGACCAGACAACGAGGAGA GCTGCAATAGCGCAGAAGATGAGTCCAAGTGGGTAGAAGAACTTATAAAGATGCATACAG CTCGGGTGCGGGACATTGAACACCTCACCAGTCTGGATTTCTTCCGCAAGACCAGCCGCA GCTATCCAGAAATTCTGACACTAAAGACATACTTGCATACGTATGAGAGCGAGATATAAC TTTCTGATCCTCTGCGGTGCAGTCTTATCAACTGGTGTATATTTTTATATTGTTTTTGTA TTTATTAATTTGAAAGCAGGACATTAAAACAAGTTAGTATTTTAATCCTGTACCAAATCT GACATATTACGCCTGAATGACTCCACTGTTTTTCTCTAATGCTGGCTTTAGGTAGTCTTG TGTTCTGAGTAGAGCTTGTAATAAATCCCGCAGCTTGCATTTTTAGTGGAAGCTTCTAAA TGGTGCTGCAAATTTGATATCTGCATTGAGGAAATATCAATTTTCCCATGCACGGTTGCC ACAGTTAGTCCTGTACTGTATTGAAATACTGATTTTGTAAAGTTGCATTCATTTTACTGT TAATTATGACAGACATATTTAAGCCTTATAGACCGATTTTAAATATAATAAATCACACAT TCAGTTTTCTGGAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGGGCTGTACCTGTGATGATAAGGTAGAGCCAAAGAATAAATTGGAGGAACTCAATAAAC GCCTTCATATAAAAGGGTCTACTGAAGAGAGACACCTCCTTTACGGACGGCCTGCGGTAC TTTATCGGACTAGATATGATATCTTATATCACAATGACTTTGAAAGCGGTTACAGTGAAA TATTCCTAATGCCACTCTGGACATCATACACTGTTTCCAAACAGGCTGAGGTCTCTGGGA TCCCGGAACACCTGACCAGTTGCGTCCGGCCTGATGTCCGTGTTTCTCCGAGTTTCAGTC AGAGCTGTTTGGCCTACAAAAATGATAAACAGATGTCCTATGGATTCCTCTTTCCTCCTT ATCTGAGCTCTTCACCAGAAGCTAAATATGATGCATTCCTTGTAACCAATATGGTTCCCA TGTATCCTGCTTTCAAACGAGTCTGGAATTATTTCCAAAGGGTTCTGGTGAAGAAGTATG CTTCAGAAAGAAATGGAGTGAATGTGATAAGCGGACCTATTTTTGACTATGACTATGATG GCTTACATGATACACAAGACAAAATCAAACAGTATGTGGAGGGCAGTTCTATTCCCATTC CAACGCACTACTACAGCATTGTCACCAGCTGCCTGGATTTCACCCAGCCCGCCGACAAGT GTGATGGCCCCCTCTCCGTCTCCTCATTCATCCTTCCGCACAGACCAGACAACGAGGAGA GCTGCAATAGCGCAGAAGATGAGTCCAAGTGGGTAGAAGAACTTATAAAGATGCATACAG CTCGGGTGCGGGACATTGAACACCTCACCAGTCTGGATTTCTTCCGCAAGACCAGCCGCA GCTATCCAGAAATTCTGACACTAAAGACATACTTGCATACGTATGAGAGCGAGATATAAC TTTCTGATCCTCTGCGGTGCAGTCTTATCAACTGGTGTATATTTTTATATTGTTTTTGTA TTTATTAATTTGAAAGCAGGACATTAAAACAAGTTAGTATTTTAATCCTGTACCAAATCT GACATATTACGCCTGAATGACTCCACTGTTTTTCTCTAATGCTGGCTTTAGGTAGTCTTG TGTTCTGAGTAGAGCTTGTAATAAATCCCGCAGCTTGCATTTTTAGTGGAAGCTTCTAAA TGGTGCTGCAAATTTGATATCTGCATTGAGGAAATATCAATTTTCCCATGCACGGTTGCC ACAGTTAGTCCTGTACTGTATTGAAATACTGATTTTGTAAAGTTGCATTCATTTTACTGT TAATTATGACAGACATATTTAAGCCTTATAGACCGATTTTAAATATAATAAATCACACAT TCAGTTTTCTGGAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 108-225, - strand, RNAz p=0.524713 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 108-225, - strand, RNAz p=0.524713 |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 86-225, gnl|bosTau2|chr14 (49735435-49735574) | |
| 86-225, gnl|canFam2|chr13 (21632035-21632188) | |
| 86-225, gnl|danRer3|chrUn (118631332-118631174) | |
| 86-225, gnl|dasNov1|scaffold_843 (134103-133950) | |
| 86-225, gnl|echTel1|scaffold_324412 (21572-21419) | |
| 86-225, gnl|fr1|chrUn (286589783-286589915) | |
| 86-225, gnl|galGal2|chr2 (147310893-147310742) | |
| 86-225, gnl|hg17|chr8 (120652125-120652280) | |
| 86-225, gnl|Hg17|chr8 (120652264-120652125) | |
| 86-225, gnl|loxAfr1|scaffold_566 (124705-124552) | |
| 86-225, gnl|mm7|chr15 (54910110-54910267) | |
| 86-225, gnl|Mm7|chr15 (54910249-54910110) | |
| 86-225, gnl|monDom2|scaffold_3 (36320924-36320763) | |
| 86-225, gnl|oryCun1|scaffold_213739 (59045-59202) | |
| 86-225, gnl|panTro1|chr7 (123275976-123276131) | |
| 86-225, gnl|rheMac2|chr8 (122062010-122062165) | |
| 86-225, gnl|rn3|chr7 (91340743-91340900) | |
| 86-225, gnl|tetNig1|chrUn_random (10141100-10141234) | |
| 86-225, gnl|xenTro1|scaffold_330 (868670-868517) | |
| 431-574, gnl|bosTau2|chr14 (49741026-49741169) | |
| 431-574, gnl|Hg17|chr8 (120646384-120646241) | |
| 431-574, gnl|Mm7|chr15 (54906073-54905930) | |
| 729-1328, gnl|bosTau2|chr14 (49750726-49751326) | |
| 729-1328, gnl|Hg17|chr8 (120639112-120638507) | |
| 729-1328, gnl|Mm7|chr15 (54899656-54899030) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 86-225, gnl|bosTau2|chr14 (49735435-49735574) | |
| 86-225, gnl|canFam2|chr13 (21632035-21632188) | |
| 86-225, gnl|danRer3|chrUn (118631332-118631174) | |
| 86-225, gnl|dasNov1|scaffold_843 (134103-133950) | |
| 86-225, gnl|echTel1|scaffold_324412 (21572-21419) | |
| 86-225, gnl|fr1|chrUn (286589783-286589915) | |
| 86-225, gnl|galGal2|chr2 (147310893-147310742) | |
| 86-225, gnl|hg17|chr8 (120652125-120652280) | |
| 86-225, gnl|Hg17|chr8 (120652264-120652125) | |
| 86-225, gnl|loxAfr1|scaffold_566 (124705-124552) | |
| 86-225, gnl|mm7|chr15 (54910110-54910267) | |
| 86-225, gnl|Mm7|chr15 (54910249-54910110) | |
| 86-225, gnl|monDom2|scaffold_3 (36320924-36320763) | |
| 86-225, gnl|oryCun1|scaffold_213739 (59045-59202) | |
| 86-225, gnl|panTro1|chr7 (123275976-123276131) | |
| 86-225, gnl|rheMac2|chr8 (122062010-122062165) | |
| 86-225, gnl|rn3|chr7 (91340743-91340900) | |
| 86-225, gnl|tetNig1|chrUn_random (10141100-10141234) | |
| 86-225, gnl|xenTro1|scaffold_330 (868670-868517) | |
| 431-574, gnl|bosTau2|chr14 (49741026-49741169) | |
| 431-574, gnl|Hg17|chr8 (120646384-120646241) | |
| 431-574, gnl|Mm7|chr15 (54906073-54905930) | |
| 729-1328, gnl|bosTau2|chr14 (49750726-49751326) | |
| 729-1328, gnl|Hg17|chr8 (120639112-120638507) | |
| 729-1328, gnl|Mm7|chr15 (54899656-54899030) |
| Expressed library(ies): 29 entry(ies) | More info |
| Expressed library(ies): 29 entry(ies) | Help | Less info |
| sug (9.80143) | |
| spc (2.04059) | |
| ret (0.901133) | |
| tra (0.861645) | |
| cte (0.58548) | |
| sto (0.539471) | |
| fbs (0.526039) | |
| kid (0.518941) | |
| cbe (0.478469) | |
| fat (0.442282) | |
| cmu (0.372787) | |
| cki (0.330469) | |
| liv (0.292569) | |
| fce (0.271592) | |
| lyg (0.266205) | |
| nep (0.183925) | |
| sag (0.182715) | |
| mgm (0.180343) | |
| fhi (0.169578) | |
| mga (0.160205) | |
| fco (0.157208) | |
| cag (0.151194) | |
| spl (0.143184) | |
| hyp (0.142837) | |
| lnt (0.142308) | |
| csk (0.140746) | |
| nmm (0.132802) | |
| eep (0.122564) | |
| pgl (0.118483) |
| Expressed library(ies): 29 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| sug (9.80143) | |
| spc (2.04059) | |
| ret (0.901133) | |
| tra (0.861645) | |
| cte (0.58548) | |
| sto (0.539471) | |
| fbs (0.526039) | |
| kid (0.518941) | |
| cbe (0.478469) | |
| fat (0.442282) | |
| cmu (0.372787) | |
| cki (0.330469) | |
| liv (0.292569) | |
| fce (0.271592) | |
| lyg (0.266205) | |
| nep (0.183925) | |
| sag (0.182715) | |
| mgm (0.180343) | |
| fhi (0.169578) | |
| mga (0.160205) | |
| fco (0.157208) | |
| cag (0.151194) | |
| spl (0.143184) | |
| hyp (0.142837) | |
| lnt (0.142308) | |
| csk (0.140746) | |
| nmm (0.132802) | |
| eep (0.122564) | |
| pgl (0.118483) |