Ss1.1-Mixn-0009j13.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCAGAAAACCAGAAGCAGATCGCCCAGTTCTCACGGAAGGATGCTCAGGACTTTCCCAAA TACGAGGCGTTCATGAATCGCTTGGCATTAGCCATCGAGCCTCTGCTGGACGCAGCCCCC GTGGACATGGAGGCCTTCCAGCGAGGCTCCCTCCTGCAAAGGCTCAAGTCGCTGTCCACC TTCAAGCCCCTGCTGAAGGCGGGCCGTACCCTGGGAGCCCAGCTGCCCCAGTATTACCAG GTCCTCACAGCTCCAAGTGCCAAGGTGCTGGATCAGTGGTTTGAGTCCGAGCCTCTAAAA GCCACTCTAGCAACGGATGCTGTAATTGGAGCCATGACAAGTCCCCACATTCCGGGGAGC GGGTATGTGCTGCTGCATCACGTGATGGGGGGCCTGGAGGGGATGCGGGGGGCCTGGGCC TACGTCGAGGGTGGCATGGGTGCCCTATCTGAAGCCATTGCAAGCTCAGCCACCGCACAT GGAGCAAGCATCTTCACTGAAAAGACGGTGGCTAGTGTGCAGGTGAGCAGTGGAGGGCGC GTTCAGGGAGTCGTGCTGCAAGATGGCTCGGAGGTGAGGAGCAGAGTGGTGCTGTCCAAC GCGTCACCGCAGAGCACCTTCCTGAAGCTGACGCCACAGGAGTGGCTTCCCGAGGGGTTC GTGCAGAGAATCTCCCAGCTGGACACCCAGTCACCTGTTACCAAAATCAACGTGGCTGTC AACAGGCTGCCCAACTTCCTGGCAGCCCCCAATACTCCCAGGGGCCAGCCGCTGCCCCAT CACCAGTGCTCCACCCACCTCAACTGTGAGGACACCCTTCGTATCCATCAGGCCTTTGAA GATGCTGTGGATGGCCTGCCTTCCCACAGTACACGCCCTACACGCTGGCTGGAGGCAAAG CCTGGGATGAGCTGGAGAGAAACACTTACGCAGATAGAGTGTTTGATTGTATCGAGGCCT ATGCCCCCGGCTTCAAGGGCTCCGTGGTGGGCAGAGACATCCTCACACCTCCGGATTTGG AGAGAATCTTTGATCTTCCTGGGGGGAACATATTCCACTGCGCCATGA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCAGAAAACCAGAAGCAGATCGCCCAGTTCTCACGGAAGGATGCTCAGGACTTTCCCAAA TACGAGGCGTTCATGAATCGCTTGGCATTAGCCATCGAGCCTCTGCTGGACGCAGCCCCC GTGGACATGGAGGCCTTCCAGCGAGGCTCCCTCCTGCAAAGGCTCAAGTCGCTGTCCACC TTCAAGCCCCTGCTGAAGGCGGGCCGTACCCTGGGAGCCCAGCTGCCCCAGTATTACCAG GTCCTCACAGCTCCAAGTGCCAAGGTGCTGGATCAGTGGTTTGAGTCCGAGCCTCTAAAA GCCACTCTAGCAACGGATGCTGTAATTGGAGCCATGACAAGTCCCCACATTCCGGGGAGC GGGTATGTGCTGCTGCATCACGTGATGGGGGGCCTGGAGGGGATGCGGGGGGCCTGGGCC TACGTCGAGGGTGGCATGGGTGCCCTATCTGAAGCCATTGCAAGCTCAGCCACCGCACAT GGAGCAAGCATCTTCACTGAAAAGACGGTGGCTAGTGTGCAGGTGAGCAGTGGAGGGCGC GTTCAGGGAGTCGTGCTGCAAGATGGCTCGGAGGTGAGGAGCAGAGTGGTGCTGTCCAAC GCGTCACCGCAGAGCACCTTCCTGAAGCTGACGCCACAGGAGTGGCTTCCCGAGGGGTTC GTGCAGAGAATCTCCCAGCTGGACACCCAGTCACCTGTTACCAAAATCAACGTGGCTGTC AACAGGCTGCCCAACTTCCTGGCAGCCCCCAATACTCCCAGGGGCCAGCCGCTGCCCCAT CACCAGTGCTCCACCCACCTCAACTGTGAGGACACCCTTCGTATCCATCAGGCCTTTGAA GATGCTGTGGATGGCCTGCCTTCCCACAGTACACGCCCTACACGCTGGCTGGAGGCAAAG CCTGGGATGAGCTGGAGAGAAACACTTACGCAGATAGAGTGTTTGATTGTATCGAGGCCT ATGCCCCCGGCTTCAAGGGCTCCGTGGTGGGCAGAGACATCCTCACACCTCCGGATTTGG AGAGAATCTTTGATCTTCCTGGGGGGAACATATTCCACTGCGCCATGA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 5 entry(ies) | More info |
| Predicted RNA structure(s): 5 entry(ies) | Help | Less info |
| 46-203, - strand, RNAz p=0.999674 | |
| 712-830, + strand, RNAz p=0.8483 | |
| 712-830, - strand, RNAz p=0.8483 | |
| 712-816, + strand, RNAz p=0.518162 | |
| 712-816, - strand, RNAz p=0.518162 |
| Predicted RNA structure(s): 5 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 46-203, - strand, RNAz p=0.999674 | |
| 712-830, + strand, RNAz p=0.8483 | |
| 712-830, - strand, RNAz p=0.8483 | |
| 712-816, + strand, RNAz p=0.518162 | |
| 712-816, - strand, RNAz p=0.518162 |
| Aligned organism(s): 38 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
| 46-203, gnl|bosTau2|chr26 (9924053-9924210) | |
| 46-203, gnl|Hg17|chr10 (100147248-100147091) | |
| 46-203, gnl|Mm7|chr19 (42634364-42634207) | |
| 503-647, gnl|bosTau2|chr26 (9928958-9929102) | |
| 503-647, gnl|Hg17|chr10 (100142315-100142171) | |
| 503-647, gnl|Mm7|chr19 (42629432-42629288) | |
| 712-869, gnl|bosTau2|chr26 (9930929-9931086) | |
| 712-869, gnl|canFam2|chr28 (14520699-14520874) | |
| 712-869, gnl|danRer3|chr13 (41638184-41638345) | |
| 712-869, gnl|fr1|chrUn (164837134-164837292) | |
| 712-869, gnl|hg17|chr10 (100140332-100140505) | |
| 712-869, gnl|Hg17|chr10 (100140502-100140345) | |
| 712-869, gnl|loxAfr1|scaffold_37478 (1997-1824) | |
| 712-869, gnl|mm7|chr19 (42627579-42627754) | |
| 712-869, gnl|Mm7|chr19 (42627751-42627594) | |
| 712-869, gnl|monDom2|scaffold_14 (23823367-23823179) | |
| 712-869, gnl|oryCun1|scaffold_201079 (692-518) | |
| 712-869, gnl|panTro1|chr8 (101877561-101877734) | |
| 712-869, gnl|rheMac2|chr9 (97981144-97981317) | |
| 712-869, gnl|rn3|chr1 (248270946-248270771) | |
| 712-869, gnl|tetNig1|chr17 (5220968-5220810) | |
| 712-869, gnl|xenTro1|scaffold_51 (2562919-2563087) | |
| 938-1046, gnl|bosTau2|chr26 (9932332-9932440) | |
| 938-1046, gnl|canFam2|chr28 (14517633-14517777) | |
| 938-1046, gnl|danRer3|chr13 (41635340-41635478) | |
| 938-1046, gnl|fr1|chrUn (164836304-164836442) | |
| 938-1046, gnl|hg17|chr10 (100136940-100137084) | |
| 938-1046, gnl|Hg17|chr10 (100137056-100136948) | |
| 938-1046, gnl|loxAfr1|scaffold_37478 (5871-5727) | |
| 938-1046, gnl|mm7|chr19 (42623487-42623618) | |
| 938-1046, gnl|Mm7|chr19 (42623603-42623495) | |
| 938-1046, gnl|monDom2|scaffold_14 (23833513-23833368) | |
| 938-1046, gnl|oryCun1|scaffold_201079 (3873-3729) | |
| 938-1046, gnl|panTro1|chr8 (101874175-101874319) | |
| 938-1046, gnl|rheMac2|chr9 (97977651-97977795) | |
| 938-1046, gnl|rn3|chr1 (248274181-248274050) | |
| 938-1046, gnl|tetNig1|chr17 (5221579-5221446) | |
| 938-1046, gnl|xenTro1|scaffold_51 (2561010-2561148) |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 46-203, gnl|bosTau2|chr26 (9924053-9924210) | |
| 46-203, gnl|Hg17|chr10 (100147248-100147091) | |
| 46-203, gnl|Mm7|chr19 (42634364-42634207) | |
| 503-647, gnl|bosTau2|chr26 (9928958-9929102) | |
| 503-647, gnl|Hg17|chr10 (100142315-100142171) | |
| 503-647, gnl|Mm7|chr19 (42629432-42629288) | |
| 712-869, gnl|bosTau2|chr26 (9930929-9931086) | |
| 712-869, gnl|canFam2|chr28 (14520699-14520874) | |
| 712-869, gnl|danRer3|chr13 (41638184-41638345) | |
| 712-869, gnl|fr1|chrUn (164837134-164837292) | |
| 712-869, gnl|hg17|chr10 (100140332-100140505) | |
| 712-869, gnl|Hg17|chr10 (100140502-100140345) | |
| 712-869, gnl|loxAfr1|scaffold_37478 (1997-1824) | |
| 712-869, gnl|mm7|chr19 (42627579-42627754) | |
| 712-869, gnl|Mm7|chr19 (42627751-42627594) | |
| 712-869, gnl|monDom2|scaffold_14 (23823367-23823179) | |
| 712-869, gnl|oryCun1|scaffold_201079 (692-518) | |
| 712-869, gnl|panTro1|chr8 (101877561-101877734) | |
| 712-869, gnl|rheMac2|chr9 (97981144-97981317) | |
| 712-869, gnl|rn3|chr1 (248270946-248270771) | |
| 712-869, gnl|tetNig1|chr17 (5220968-5220810) | |
| 712-869, gnl|xenTro1|scaffold_51 (2562919-2563087) | |
| 938-1046, gnl|bosTau2|chr26 (9932332-9932440) | |
| 938-1046, gnl|canFam2|chr28 (14517633-14517777) | |
| 938-1046, gnl|danRer3|chr13 (41635340-41635478) | |
| 938-1046, gnl|fr1|chrUn (164836304-164836442) | |
| 938-1046, gnl|hg17|chr10 (100136940-100137084) | |
| 938-1046, gnl|Hg17|chr10 (100137056-100136948) | |
| 938-1046, gnl|loxAfr1|scaffold_37478 (5871-5727) | |
| 938-1046, gnl|mm7|chr19 (42623487-42623618) | |
| 938-1046, gnl|Mm7|chr19 (42623603-42623495) | |
| 938-1046, gnl|monDom2|scaffold_14 (23833513-23833368) | |
| 938-1046, gnl|oryCun1|scaffold_201079 (3873-3729) | |
| 938-1046, gnl|panTro1|chr8 (101874175-101874319) | |
| 938-1046, gnl|rheMac2|chr9 (97977651-97977795) | |
| 938-1046, gnl|rn3|chr1 (248274181-248274050) | |
| 938-1046, gnl|tetNig1|chr17 (5221579-5221446) | |
| 938-1046, gnl|xenTro1|scaffold_51 (2561010-2561148) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cov (0.132153) |