Non-Coding RNA Search

Ss1.1-Mixn-0009k07.5

Sequence:


               
               TTGGTTCCATGGCAACAAAGCATTCAGATCAGCCACTTGTTCCCACTGGTTTTGGAGGAC
ACAGGACATGGGTCCAGGCTCTCACAGATCTGTCTTGGGGTTCATGCAGAGTCAGAACTG
GCCTAGGACGGAGTCTTGCTTCTTTCGCCTCCAGTGATTCCCCTCCATCATATCACAAAA
TGAGCCAATGAAAAATCTCTCCTCCTTCTTTAACCTCTCTCTCCGTCTGCTCCTGCCGCA
GGCGACCCAGATGCCTCACCGCGGAGGCCCCACGTCCCTGCTGCCCTGTCAGTCCTGGTT
CACTCAGTGGCTTTGTGAATGTAAATAAGGGGCAGGGGCCCCAGAGGATCGAAATGTTTT
TCTATATATTAGAACTATTTTTTGATAAAATTATATATTTTCCTTGCTAGTTGAAGTGTT
ACTGCCTTTGTGTGACTAGCTGAAAACACCAGAGCAGCCCCTTCTGCACTGCGTCATCCA
CCCATTTTTGATAAGTAGGGCGGCAGCGCTCAGCATTTCGGCTCTCAGGGCCTCATCAGA
GGGCCAGGCAGGACCTCCCTGGGACGCCTGGGATTTCCATCGCTCAGGCCCTCGGCAGAC
TGAGGTAGTGACAGAGCTAGCCCAAGGCAGGCCACGCTCACCCCCCTTCCCTTGCCCTTA
TTTAAGCTGTTGTACATGTTTTCTTCATGGGAACCAGATTTGGTTCTTTCTACAGATTTT
GCCAGTGAAATAAAAATGTGTTGTAGTAGTTGTGTTTGAAATGAAATCAGAAGGGAAGTG
GCAGAAAGGCTCCTGCTCTGGACTCCCTGGCGGCCGACCTAGAATGGCCCTCATGTGGGC
GTGGTGTGCCAGGGCTTGGCCCGACGGGGTCTCGGGGTGTGGGAACACACAGGGTGATGG
CTCAGCCATTCAGAGGTCCGCCGTTAGCCCTGTCGGCAAGGAACCCTGCGAGGACAGTAA
GTGTCTGCGTCTAAGCTCCCGGAAATCAATATAAACATGTCTTGGTATGTGTCCCTCATA
CTCTTCCGCTGTGTAAAACTTAATACTGTTAGTTGCCCATTCGTGACATTTTGTTTCACA
GTTTTACTTATTATTTAAAAATACATTATTTAATTGATGTACAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTGGTTCCATGGCAACAAAGCATTCAGATCAGCCACTTGTTCCCACTGGTTTTGGAGGAC
ACAGGACATGGGTCCAGGCTCTCACAGATCTGTCTTGGGGTTCATGCAGAGTCAGAACTG
GCCTAGGACGGAGTCTTGCTTCTTTCGCCTCCAGTGATTCCCCTCCATCATATCACAAAA
TGAGCCAATGAAAAATCTCTCCTCCTTCTTTAACCTCTCTCTCCGTCTGCTCCTGCCGCA
GGCGACCCAGATGCCTCACCGCGGAGGCCCCACGTCCCTGCTGCCCTGTCAGTCCTGGTT
CACTCAGTGGCTTTGTGAATGTAAATAAGGGGCAGGGGCCCCAGAGGATCGAAATGTTTT
TCTATATATTAGAACTATTTTTTGATAAAATTATATATTTTCCTTGCTAGTTGAAGTGTT
ACTGCCTTTGTGTGACTAGCTGAAAACACCAGAGCAGCCCCTTCTGCACTGCGTCATCCA
CCCATTTTTGATAAGTAGGGCGGCAGCGCTCAGCATTTCGGCTCTCAGGGCCTCATCAGA
GGGCCAGGCAGGACCTCCCTGGGACGCCTGGGATTTCCATCGCTCAGGCCCTCGGCAGAC
TGAGGTAGTGACAGAGCTAGCCCAAGGCAGGCCACGCTCACCCCCCTTCCCTTGCCCTTA
TTTAAGCTGTTGTACATGTTTTCTTCATGGGAACCAGATTTGGTTCTTTCTACAGATTTT
GCCAGTGAAATAAAAATGTGTTGTAGTAGTTGTGTTTGAAATGAAATCAGAAGGGAAGTG
GCAGAAAGGCTCCTGCTCTGGACTCCCTGGCGGCCGACCTAGAATGGCCCTCATGTGGGC
GTGGTGTGCCAGGGCTTGGCCCGACGGGGTCTCGGGGTGTGGGAACACACAGGGTGATGG
CTCAGCCATTCAGAGGTCCGCCGTTAGCCCTGTCGGCAAGGAACCCTGCGAGGACAGTAA
GTGTCTGCGTCTAAGCTCCCGGAAATCAATATAAACATGTCTTGGTATGTGTCCCTCATA
CTCTTCCGCTGTGTAAAACTTAATACTGTTAGTTGCCCATTCGTGACATTTTGTTTCACA
GTTTTACTTATTATTTAAAAATACATTATTTAATTGATGTACAAAAAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               148-267, - strand, RNAz p=0.732688
               

               
               307-422, + strand, RNAz p=0.535045

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               148-267, - strand, RNAz p=0.732688
               

               
               307-422, + strand, RNAz p=0.535045

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-529, gnl|bosTau2|chr4 (42947899-42947380)
               

               
               1-529, gnl|Hg17|chr7 (44392206-44391396)
               

               
               1-529, gnl|Mm7|chr11 (6223532-6223039)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-529, gnl|bosTau2|chr4 (42947899-42947380)
               

               
               1-529, gnl|Hg17|chr7 (44392206-44391396)
               

               
               1-529, gnl|Mm7|chr11 (6223532-6223039)

Expressed library(ies): 19 entry(ies)

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Expressed library(ies): 19 entry(ies)

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               pla (0.401016)
               

               
               elu (0.385356)
               

               
               pgl (0.35545)
               

               
               ill (0.351185)
               

               
               cag (0.302389)
               

               
               lnt (0.284616)
               

               
               cga (0.279096)
               

               
               cov (0.264306)
               

               
               cly (0.241284)
               

               
               sin (0.174948)
               

               
               duo (0.172801)
               

               
               mcp (0.170648)
               

               
               hyp (0.142837)
               

               
               nca (0.136874)
               

               
               ute (0.132784)
               

               
               ova (0.129132)
               

               
               ebs (0.118301)
               

               
               med (0.116252)
               

               
               ldo (0.0970026)

Expressed library(ies): 19 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.401016)
               

               
               elu (0.385356)
               

               
               pgl (0.35545)
               

               
               ill (0.351185)
               

               
               cag (0.302389)
               

               
               lnt (0.284616)
               

               
               cga (0.279096)
               

               
               cov (0.264306)
               

               
               cly (0.241284)
               

               
               sin (0.174948)
               

               
               duo (0.172801)
               

               
               mcp (0.170648)
               

               
               hyp (0.142837)
               

               
               nca (0.136874)
               

               
               ute (0.132784)
               

               
               ova (0.129132)
               

               
               ebs (0.118301)
               

               
               med (0.116252)
               

               
               ldo (0.0970026)

	148-267, - strand, RNAz p=0.732688
	307-422, + strand, RNAz p=0.535045

	1-529, gnl\|bosTau2\|chr4 (42947899-42947380)
	1-529, gnl\|Hg17\|chr7 (44392206-44391396)
	1-529, gnl\|Mm7\|chr11 (6223532-6223039)

	pla (0.401016)
	elu (0.385356)
	pgl (0.35545)
	ill (0.351185)
	cag (0.302389)
	lnt (0.284616)
	cga (0.279096)
	cov (0.264306)
	cly (0.241284)
	sin (0.174948)
	duo (0.172801)
	mcp (0.170648)
	hyp (0.142837)
	nca (0.136874)
	ute (0.132784)
	ova (0.129132)
	ebs (0.118301)
	med (0.116252)
	ldo (0.0970026)