Non-Coding RNA Search

Ss1.1-Mixn-0009o19.5

Sequence:


               
               TACCTTGATGCCATTAAATTACTCTTAGACTTTGCTGCTTTCCCTAATCAGATGGAAAAC
AATGAATAGAGGTACACTCCCCTTGATTATGCATTGCTTGGTGAGCGCCATGAAGTGATC
CAGTTCATGTTGGAACACGGAGCCCTGTCCATCGCNGCTATACAGGACATCGCAGCCTTC
AAAATCCAGGCCGTCTACAAAGGTTACAAGGTCAGAAAAGCTTTCCGAGACCGGAAAAAT
CTTCTCATGAAGCATGAGCAGTTGAGAAAAGATGCTGCTGCCAAGAAGCGAGAAGAGGAA
ATCAAGCGAAGAGAGGCAGAACAACAGAAGGGAAGGTTGAGTCCAGATTCCTGCAGACCT
CAAGCCCCTCCCCATTTGCCCAGCACCCAGTCTGAGCCTCACAGTCAGAGCTGTGCCCCT
AGCAAACAGCCTCCTTGTAGCGACACAGCCCAGGGCCCTGAGCAGAAAGCCTGCAGACAA
TCTCCAGGCAGAGAGACTCCAAGCAGAGCCCCCCAGAAGGAGCAGCGTCTTTCCCCCGAC
TTTCCAAGAACAGGCCCCATAAAACCAAGAGAGCTGCGGCTGCAGATAATCCAGAGAGAA
CGAAGCAGGAAAGAGCTGTTTCGAAAAAAGAACAAGGCAGCGGCCGTCATCCAGCGGGCC
TGGAGAAGCTACCAGCTCAGGAAGCACCTGTCCCATCTTCTGTACATGAAGCAGCTTGGA
ACCAGAGACATGGATAGATGGAATCGAAACTGCATGGCCTTGATCCTCCACGCTTGGAGG
AAGAACTTGGAACTGAAACCTTCAAAGGCCATGGCAGTAAGCAGGACCACCAAGAGTCCA
CCCAAGGGCAGCTCGGCCACAAAGCTCACCAGGCACTCAGTGCTCAAGCAAATCTACGGT
TCTCAAGAAGGGAAACTACGTCAACCCACACGATCTTCAAAAGCCCACGCTGTACTGAGT
CTCAACTCAGTGAGCAACTTGCAGTGTATACACCTCCTTGACAACAGTGGAAGATCAAAG
AATTTTTCTTATAACCTGCAATCAGCTAATCCATCAAAAAACAAGACAAAGCTTCGACTG
CCTATGGAGGAAAACTGCCTGGGGACGCTCCAATAGCTAGTGCAGAGTTCAGGTTCTGGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TACCTTGATGCCATTAAATTACTCTTAGACTTTGCTGCTTTCCCTAATCAGATGGAAAAC
AATGAATAGAGGTACACTCCCCTTGATTATGCATTGCTTGGTGAGCGCCATGAAGTGATC
CAGTTCATGTTGGAACACGGAGCCCTGTCCATCGCNGCTATACAGGACATCGCAGCCTTC
AAAATCCAGGCCGTCTACAAAGGTTACAAGGTCAGAAAAGCTTTCCGAGACCGGAAAAAT
CTTCTCATGAAGCATGAGCAGTTGAGAAAAGATGCTGCTGCCAAGAAGCGAGAAGAGGAA
ATCAAGCGAAGAGAGGCAGAACAACAGAAGGGAAGGTTGAGTCCAGATTCCTGCAGACCT
CAAGCCCCTCCCCATTTGCCCAGCACCCAGTCTGAGCCTCACAGTCAGAGCTGTGCCCCT
AGCAAACAGCCTCCTTGTAGCGACACAGCCCAGGGCCCTGAGCAGAAAGCCTGCAGACAA
TCTCCAGGCAGAGAGACTCCAAGCAGAGCCCCCCAGAAGGAGCAGCGTCTTTCCCCCGAC
TTTCCAAGAACAGGCCCCATAAAACCAAGAGAGCTGCGGCTGCAGATAATCCAGAGAGAA
CGAAGCAGGAAAGAGCTGTTTCGAAAAAAGAACAAGGCAGCGGCCGTCATCCAGCGGGCC
TGGAGAAGCTACCAGCTCAGGAAGCACCTGTCCCATCTTCTGTACATGAAGCAGCTTGGA
ACCAGAGACATGGATAGATGGAATCGAAACTGCATGGCCTTGATCCTCCACGCTTGGAGG
AAGAACTTGGAACTGAAACCTTCAAAGGCCATGGCAGTAAGCAGGACCACCAAGAGTCCA
CCCAAGGGCAGCTCGGCCACAAAGCTCACCAGGCACTCAGTGCTCAAGCAAATCTACGGT
TCTCAAGAAGGGAAACTACGTCAACCCACACGATCTTCAAAAGCCCACGCTGTACTGAGT
CTCAACTCAGTGAGCAACTTGCAGTGTATACACCTCCTTGACAACAGTGGAAGATCAAAG
AATTTTTCTTATAACCTGCAATCAGCTAATCCATCAAAAAACAAGACAAAGCTTCGACTG
CCTATGGAGGAAAACTGCCTGGGGACGCTCCAATAGCTAGTGCAGAGTTCAGGTTCTGGT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|61839425|ref|XP_612465.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61839425|ref|XP_612465.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               904-1063, - strand, RNAz p=0.891104

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               904-1063, - strand, RNAz p=0.891104

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               70-293, gnl|bosTau2|chr27 (1372767-1372543)
               

               
               70-293, gnl|Hg17|chr9 (100114699-100114923)
               

               
               70-293, gnl|Mm7|chr4 (48421410-48421634)
               


               
               825-1104, gnl|bosTau2|chr13 (5279918-5280198)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               70-293, gnl|bosTau2|chr27 (1372767-1372543)
               

               
               70-293, gnl|Hg17|chr9 (100114699-100114923)
               

               
               70-293, gnl|Mm7|chr4 (48421410-48421634)
               


               
               825-1104, gnl|bosTau2|chr13 (5279918-5280198)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               cty (0.20816)
               

               
               spl (0.143184)
               

               
               ova (0.129132)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.20816)
               

               
               spl (0.143184)
               

               
               ova (0.129132)

	70-293, gnl\|bosTau2\|chr27 (1372767-1372543)
	70-293, gnl\|Hg17\|chr9 (100114699-100114923)
	70-293, gnl\|Mm7\|chr4 (48421410-48421634)

	825-1104, gnl\|bosTau2\|chr13 (5279918-5280198)