Non-Coding RNA Search

Ss1.1-Mixn-0009p17.5

Sequence:


               
               TTTAATTTAAGCAAAGACTAAAATCAACCATTTGATGCTGCAGGGGCCAGTCAGGATCTG
GGAGGGGGGGCTCTGAAGAGAAGGGGGTTGGCTGGGGAGGGTTCAGATCAGGAGAGGTAA
GGCGGGCACCTGGGCAGGTACCAGCCTGCTCACAGGTGGCTGGCCCCAACCCTGTTTCTT
TCTACTTCCCAGTCTGGCCTGTCCCCACAGTGCTTGAATGTCACAGGCTGGCGGGAGCCT
CCAGAGATGCCCTTCTCTGTCCCCAGCCTCAGGAGGGCCACCAGGCACCACCAGGTGCCA
GAGACCGGGGGCTGAGAGGGCAGGGGGCCAGCGTCCACGGTGCCCCAGCAGCTCCTCCTG
CCTGTTCCTGGCTCCCAGCCCCTGCCCCTCCCCGGGCCCCCACCTCCATGGCCACCTCAT
TTTCTGTTCTCGTTTTGCAGGTTGCACAAGGAGAGAACTCAGCACGGGGGGTTGGTTCTT
TGGGTTTTGTTTTCTGTTTGTTTATTTGTTTAATTTAATGATTTGTAAAGTGATGTTCCT
CTTCCTTTTTTACACTTTTCAGCTCATATTTAACCTCTGTTTGGAAAGTGATTCTTGTAA
CTGTACATTTTTTTGCCTCCTAACAAGAATAAATGACGATTTTGTGTTAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTAATTTAAGCAAAGACTAAAATCAACCATTTGATGCTGCAGGGGCCAGTCAGGATCTG
GGAGGGGGGGCTCTGAAGAGAAGGGGGTTGGCTGGGGAGGGTTCAGATCAGGAGAGGTAA
GGCGGGCACCTGGGCAGGTACCAGCCTGCTCACAGGTGGCTGGCCCCAACCCTGTTTCTT
TCTACTTCCCAGTCTGGCCTGTCCCCACAGTGCTTGAATGTCACAGGCTGGCGGGAGCCT
CCAGAGATGCCCTTCTCTGTCCCCAGCCTCAGGAGGGCCACCAGGCACCACCAGGTGCCA
GAGACCGGGGGCTGAGAGGGCAGGGGGCCAGCGTCCACGGTGCCCCAGCAGCTCCTCCTG
CCTGTTCCTGGCTCCCAGCCCCTGCCCCTCCCCGGGCCCCCACCTCCATGGCCACCTCAT
TTTCTGTTCTCGTTTTGCAGGTTGCACAAGGAGAGAACTCAGCACGGGGGGTTGGTTCTT
TGGGTTTTGTTTTCTGTTTGTTTATTTGTTTAATTTAATGATTTGTAAAGTGATGTTCCT
CTTCCTTTTTTACACTTTTCAGCTCATATTTAACCTCTGTTTGGAAAGTGATTCTTGTAA
CTGTACATTTTTTTGCCTCCTAACAAGAATAAATGACGATTTTGTGTTAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               371-559, + strand, RNAz p=0.77253

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               371-559, + strand, RNAz p=0.77253

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_138795, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_138795, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               371-648, gnl|bosTau2|chr16 (46938020-46937743)
               

               
               371-648, gnl|Hg17|chr1 (198834488-198834192)
               

               
               371-648, gnl|Mm7|chr1 (135045760-135046052)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               371-648, gnl|bosTau2|chr16 (46938020-46937743)
               

               
               371-648, gnl|Hg17|chr1 (198834488-198834192)
               

               
               371-648, gnl|Mm7|chr1 (135045760-135046052)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               ece (0.229305)
               

               
               mas (0.210305)
               

               
               fbs (0.175346)
               

               
               hyp (0.142837)
               

               
               hlv (0.139256)
               

               
               ebs (0.118301)
               

               
               jej (0.0989218)

Expressed library(ies): 7 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.229305)
               

               
               mas (0.210305)
               

               
               fbs (0.175346)
               

               
               hyp (0.142837)
               

               
               hlv (0.139256)
               

               
               ebs (0.118301)
               

               
               jej (0.0989218)

	371-648, gnl\|bosTau2\|chr16 (46938020-46937743)
	371-648, gnl\|Hg17\|chr1 (198834488-198834192)
	371-648, gnl\|Mm7\|chr1 (135045760-135046052)

	ece (0.229305)
	mas (0.210305)
	fbs (0.175346)
	hyp (0.142837)
	hlv (0.139256)
	ebs (0.118301)
	jej (0.0989218)