Non-Coding RNA Search

Ss1.1-Mixn-0010a17.5

Sequence:


               
               GGCTGCAAGATGGAGGCAACTAGTGGAGCTGATGATCTGGTTTCCGGGGAACTGGTGTCA
GTGGCACATGCTCTTTCTCTCCCAGCGGAGTCTTATGGCAATGATCCTGATATTGAGATG
GCTTGGGCTATGAGAGCAATGCAGCATGCCGAAGTCTACTACAAACTGATTTCATCAGTT
GATCCACAGTTCCTGAAACTCACCAAAGTGGATGACCAAATCTATTCTGAGTTTCGGGAA
AATTTTGAGAAACTCAGGATAGATGTATTAGACCCAGAAGAGCTCAAATCAGAATCAGCT
AAAGAGAAGTGGAGACCATTCTGCTTGAAGTTTAATGGGATTGTAGAAGACTTCAACTAT
GGTACTTTGCTGAGACTGAACTGTTCTCAGGGCTACACTGAGGAAAACACTATCTTTGCC
CCCCGGATACAATTTTTTGCCATTGAAATTGCTCGGAACCGGGAAGGTTATAACAAAGCA
GTTTACGCTACTGTTCAGGACAAAGAAGAGAAAGGAGCCAACAATGGAGGAGACAAGGGA
GCTGACAGTGGAGGAGAAGAGAAAGGAGCCAACCAAGAAGGAGAAAAAGAGAAAACCAGC
AAAGGAGGAGAAAAAGAGAAGTAATCCTGTAAAAAAATCAACAAAAGTGGTGAAGCAGCT
ATGTAAGGTAGACAGGGAATAGCACTCTAAAAGCTGCGACTCACCTGAGCCTACAAGTAC
CATGATGCTATTTGCACAGGCCCTTATGGTCAGATGTATCTCCTTGTTCAGTGGAAGGGC
ATACAGAAGGATGTCTTTCTGGCCTAATCATTAGCAGCTGCAGTAGTTGTTCTCTTGTAT
GAATTGGCTTGAAGACTATTAGTGGGGTCTTAGTTGATGGTTTCTTGTTCCTCGCCACCA
GTCGAGTAAGAAATTTTGTAAATAAATTTCTTTTGGTTCTTAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCTGCAAGATGGAGGCAACTAGTGGAGCTGATGATCTGGTTTCCGGGGAACTGGTGTCA
GTGGCACATGCTCTTTCTCTCCCAGCGGAGTCTTATGGCAATGATCCTGATATTGAGATG
GCTTGGGCTATGAGAGCAATGCAGCATGCCGAAGTCTACTACAAACTGATTTCATCAGTT
GATCCACAGTTCCTGAAACTCACCAAAGTGGATGACCAAATCTATTCTGAGTTTCGGGAA
AATTTTGAGAAACTCAGGATAGATGTATTAGACCCAGAAGAGCTCAAATCAGAATCAGCT
AAAGAGAAGTGGAGACCATTCTGCTTGAAGTTTAATGGGATTGTAGAAGACTTCAACTAT
GGTACTTTGCTGAGACTGAACTGTTCTCAGGGCTACACTGAGGAAAACACTATCTTTGCC
CCCCGGATACAATTTTTTGCCATTGAAATTGCTCGGAACCGGGAAGGTTATAACAAAGCA
GTTTACGCTACTGTTCAGGACAAAGAAGAGAAAGGAGCCAACAATGGAGGAGACAAGGGA
GCTGACAGTGGAGGAGAAGAGAAAGGAGCCAACCAAGAAGGAGAAAAAGAGAAAACCAGC
AAAGGAGGAGAAAAAGAGAAGTAATCCTGTAAAAAAATCAACAAAAGTGGTGAAGCAGCT
ATGTAAGGTAGACAGGGAATAGCACTCTAAAAGCTGCGACTCACCTGAGCCTACAAGTAC
CATGATGCTATTTGCACAGGCCCTTATGGTCAGATGTATCTCCTTGTTCAGTGGAAGGGC
ATACAGAAGGATGTCTTTCTGGCCTAATCATTAGCAGCTGCAGTAGTTGTTCTCTTGTAT
GAATTGGCTTGAAGACTATTAGTGGGGTCTTAGTTGATGGTTTCTTGTTCCTCGCCACCA
GTCGAGTAAGAAATTTTGTAAATAAATTTCTTTTGGTTCTTAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|55663540|ref|XP_529047.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55663540|ref|XP_529047.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               166-306, - strand, RNAz p=0.930806

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               166-306, - strand, RNAz p=0.930806

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               166-306, gnl|bosTau2|chr11 (1469480-1469620)
               

               
               166-306, gnl|Hg17|chrX (75178006-75178146)
               

               
               166-306, gnl|Mm7|chrX (100409297-100409437)
               


               
               418-942, gnl|bosTau2|chr11 (1471000-1471533)
               

               
               418-942, gnl|Hg17|chrX (75180149-75180731)
               

               
               418-942, gnl|Mm7|chrX (100410374-100410843)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               166-306, gnl|bosTau2|chr11 (1469480-1469620)
               

               
               166-306, gnl|Hg17|chrX (75178006-75178146)
               

               
               166-306, gnl|Mm7|chrX (100409297-100409437)
               


               
               418-942, gnl|bosTau2|chr11 (1471000-1471533)
               

               
               418-942, gnl|Hg17|chrX (75180149-75180731)
               

               
               418-942, gnl|Mm7|chrX (100410374-100410843)

Expressed library(ies): 26 entry(ies)

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Expressed library(ies): 26 entry(ies)

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               tbr (0.462535)
               

               
               lin (0.436808)
               

               
               lyg (0.399308)
               

               
               cmu (0.372787)
               

               
               rec (0.346141)
               

               
               ski (0.29347)
               

               
               pty (0.285429)
               

               
               csk (0.281492)
               

               
               ste (0.270416)
               

               
               ova (0.258264)
               

               
               ret (0.257467)
               

               
               col (0.195008)
               

               
               ldo (0.194005)
               

               
               sag (0.182715)
               

               
               ill (0.175593)
               

               
               isp (0.150376)
               

               
               hlv (0.139256)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               ute (0.132784)
               

               
               sug (0.127291)
               

               
               pgl (0.118483)
               

               
               spc (0.113366)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

Expressed library(ies): 26 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tbr (0.462535)
               

               
               lin (0.436808)
               

               
               lyg (0.399308)
               

               
               cmu (0.372787)
               

               
               rec (0.346141)
               

               
               ski (0.29347)
               

               
               pty (0.285429)
               

               
               csk (0.281492)
               

               
               ste (0.270416)
               

               
               ova (0.258264)
               

               
               ret (0.257467)
               

               
               col (0.195008)
               

               
               ldo (0.194005)
               

               
               sag (0.182715)
               

               
               ill (0.175593)
               

               
               isp (0.150376)
               

               
               hlv (0.139256)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               ute (0.132784)
               

               
               sug (0.127291)
               

               
               pgl (0.118483)
               

               
               spc (0.113366)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

	166-306, gnl\|bosTau2\|chr11 (1469480-1469620)
	166-306, gnl\|Hg17\|chrX (75178006-75178146)
	166-306, gnl\|Mm7\|chrX (100409297-100409437)

	418-942, gnl\|bosTau2\|chr11 (1471000-1471533)
	418-942, gnl\|Hg17\|chrX (75180149-75180731)
	418-942, gnl\|Mm7\|chrX (100410374-100410843)

	tbr (0.462535)
	lin (0.436808)
	lyg (0.399308)
	cmu (0.372787)
	rec (0.346141)
	ski (0.29347)
	pty (0.285429)
	csk (0.281492)
	ste (0.270416)
	ova (0.258264)
	ret (0.257467)
	col (0.195008)
	ldo (0.194005)
	sag (0.182715)
	ill (0.175593)
	isp (0.150376)
	hlv (0.139256)
	pla (0.133672)
	nmm (0.132802)
	ute (0.132784)
	sug (0.127291)
	pgl (0.118483)
	spc (0.113366)
	cty (0.10408)
	jej (0.0989218)
	eje (0.0988338)