Non-Coding RNA Search

Ss1.1-Mixn-0010b04.5

Sequence:


               
               GGCGGCCCGCTTGGCGGCGACTCTTATCCAAAAGGGGCGTCTGTGTCCCCAAAGCCAGTT
CTCAACCGCAGCCCCCTCCCGGGGGGCAAGAGCGCAAGGGCTGCTGCGGGGCGGCAGAGG
CCGCTGGCGGCGCCTCGGCCAGCCCTTCCCGCGCGGAGAGCACCCTGGGGCTGCGGCGGG
AAGGTTCCGCTGCCTAAGGATGACAGTTCTAGGGCACCTTCGAAGTTGGAGCTGCCGGTG
GTTGCCACTCTTGCTGCTGCTGGGCACAGGCCGTGAGCCAGGGGTGGAAGGTGTGACACA
CTACAAGGCCGGCGACCCCGTCATTCTGTATGTCAACAAAGTGGGACCTTATCATAACCC
TCAGGAGACTTACCACTACTATCAGCTTCCAGTATGCTGTCCTGAGAAGATTCGTCACAA
AAGCCTTAGCCTGGGTGAAGTGCTGGATGGGGACCGAATGGCTGAGTCTTTGTACGAGAT
CCGCTTTCGGGAGAATGTGGAGAAGAGAATTCTATGCCACATGCAGCTCAATTCCGCGCA
GGTGGAACAGCTGCGCCAGGCCATTGAGGAACTGTATTACTTTGAATTTGTGGTGGACGA
CTTACCAATCCGTGGCTTTGTGGGCTACATGGAGGAGAGTGGCTTCCTGCCTCACAGCCA
CAAGATAGGACTCTGGACCCATTTGGACTTCCACCTAGAATTCCACGGAGATCGAATTAT
ATTTGCCAATGTCTCAGTGCGAGACGTCAAGCCCCACAGTTTAGATGGGTTACGGCCTGA
TGAGTTCCTAGGCCTCACCCACACCTACAGTGTGCGCTGGTCTGAGACTTCAGTCGAGCG
TCGGAGTGACAGGCGCCGTGGTGATGATGGTGGTTTCTTTCCCCGAACGCTGGAAATCCA
TTGGTTGTCCAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCGGCCCGCTTGGCGGCGACTCTTATCCAAAAGGGGCGTCTGTGTCCCCAAAGCCAGTT
CTCAACCGCAGCCCCCTCCCGGGGGGCAAGAGCGCAAGGGCTGCTGCGGGGCGGCAGAGG
CCGCTGGCGGCGCCTCGGCCAGCCCTTCCCGCGCGGAGAGCACCCTGGGGCTGCGGCGGG
AAGGTTCCGCTGCCTAAGGATGACAGTTCTAGGGCACCTTCGAAGTTGGAGCTGCCGGTG
GTTGCCACTCTTGCTGCTGCTGGGCACAGGCCGTGAGCCAGGGGTGGAAGGTGTGACACA
CTACAAGGCCGGCGACCCCGTCATTCTGTATGTCAACAAAGTGGGACCTTATCATAACCC
TCAGGAGACTTACCACTACTATCAGCTTCCAGTATGCTGTCCTGAGAAGATTCGTCACAA
AAGCCTTAGCCTGGGTGAAGTGCTGGATGGGGACCGAATGGCTGAGTCTTTGTACGAGAT
CCGCTTTCGGGAGAATGTGGAGAAGAGAATTCTATGCCACATGCAGCTCAATTCCGCGCA
GGTGGAACAGCTGCGCCAGGCCATTGAGGAACTGTATTACTTTGAATTTGTGGTGGACGA
CTTACCAATCCGTGGCTTTGTGGGCTACATGGAGGAGAGTGGCTTCCTGCCTCACAGCCA
CAAGATAGGACTCTGGACCCATTTGGACTTCCACCTAGAATTCCACGGAGATCGAATTAT
ATTTGCCAATGTCTCAGTGCGAGACGTCAAGCCCCACAGTTTAGATGGGTTACGGCCTGA
TGAGTTCCTAGGCCTCACCCACACCTACAGTGTGCGCTGGTCTGAGACTTCAGTCGAGCG
TCGGAGTGACAGGCGCCGTGGTGATGATGGTGGTTTCTTTCCCCGAACGCTGGAAATCCA
TTGGTTGTCCAT

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               182-543, gnl|bosTau2|chr10 (12293606-12293971)
               

               
               182-543, gnl|Hg17|chr14 (23734084-23733719)
               

               
               182-543, gnl|Mm7|chr14 (50510309-50509944)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               182-543, gnl|bosTau2|chr10 (12293606-12293971)
               

               
               182-543, gnl|Hg17|chr14 (23734084-23733719)
               

               
               182-543, gnl|Mm7|chr14 (50510309-50509944)

Expressed library(ies): 9 entry(ies)

More info

Expressed library(ies): 9 entry(ies)

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               ton (0.351)
               

               
               col (0.195008)
               

               
               fhi (0.169578)
               

               
               lnt (0.142308)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               ute (0.132784)
               

               
               eep (0.122564)
               

               
               cty (0.10408)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ton (0.351)
               

               
               col (0.195008)
               

               
               fhi (0.169578)
               

               
               lnt (0.142308)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               ute (0.132784)
               

               
               eep (0.122564)
               

               
               cty (0.10408)

	182-543, gnl\|bosTau2\|chr10 (12293606-12293971)
	182-543, gnl\|Hg17\|chr14 (23734084-23733719)
	182-543, gnl\|Mm7\|chr14 (50510309-50509944)

	ton (0.351)
	col (0.195008)
	fhi (0.169578)
	lnt (0.142308)
	pla (0.133672)
	nmm (0.132802)
	ute (0.132784)
	eep (0.122564)
	cty (0.10408)