Ss1.1-Mixn-0010b19.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TCGGCCTGGAGGCGGCCAGGACCGAGAAGCAGGTGTGTGAGCCTGAAAACCCCTGCGAGG ACAAGACCCACAACTGCCACAGGCATGCTGAGTGTGTCTACCTGGGCCACTTCAGCGACC CCATGTTCAAGTGCGAGTGCCGGACGGGCTACGCGGGTGACGGGCTCATCTGTGGGGAAG ATTCGGACCTGGACGGCTGGCCCAACAAGAACCTGGTCTGCGCCACCAACGCCACCTACC ACTGCATCAAGGACAACTGCCCGCTCCTGCCTAACTCTGGGCAAGAGGACTTTGACAAGG ACGGCACTGGGGACGCCTGTGACGACGACGACGACAACGACGGCGTCAGTGATGAGAAGG ACAACTGCCAGCTTCTCTTCAACCCCCGTCAGTTTGACTACGACAAAGACGAGGTTGGGG ACCGCTGCGACAACTGCCCCTACGTGCACAACCCCGCACAGATCGACACCGACAGCAACG GGGAGGGCGATGCCTGCTCCGTGGACATCGACGGCGACGATGTCTTCAACGAGCGAGACA ACTGTCCCTACGTCTACAACACCGACCAGAGAGACACGGACGGCGACGGCGTGGGCGACC ACTGCGACAACTGCCCCCTGGTGCACAATCCCGACCAGACGGACGTGGACAACGACCTCG TGGGAGACCAGTGTGACAACAATGAGGACGTCGACGAGGACGGCCACCAGAACAACCAGG ACAACTGTCCCTACATCTCCAACGCCAACCAGGCCGACCACGACCACGACGGCAAGGGCG ACGCCTGCGACTCGGATGACGACAACGATGGGGTCCCGGATGACAGGGACAACTGCCGGC TAGTCGCCAACCCCGACCAGGAGGACTCGGACGGTGATGGGCGTGGCGACGCTTGTAAAG ACGACTTTGACAACGACAGCATCCCGGACATTGACGACGTGTGTCCCGAGAACAACGCCA TCAGCGAGACGGACTTCCGCAACTTCCAGATGGTGCCCCTGGACCCCAAGGGCACCACGC AGATCGATCCCAACTGGGTCATTCGCCACCAAGGCAAGGAGCTGGTGCAGACGGCCAACT CCGACCCCGGCATCGCTGTGGGTTTTGACGAGTTTGGGTCCGTGGACTTCAGCGGCACCT TCTACGTCAACACGGACCGGGACGACGACTACGCCGGCTTCGTCTTTGGCTACCAGTCCA GCAGCCGCTTCTACGTGGTGATGTGGAAGCAGGTGACGCAGACCTACTGGGAGGACCAGC CCACGCGGGCCT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TCGGCCTGGAGGCGGCCAGGACCGAGAAGCAGGTGTGTGAGCCTGAAAACCCCTGCGAGG ACAAGACCCACAACTGCCACAGGCATGCTGAGTGTGTCTACCTGGGCCACTTCAGCGACC CCATGTTCAAGTGCGAGTGCCGGACGGGCTACGCGGGTGACGGGCTCATCTGTGGGGAAG ATTCGGACCTGGACGGCTGGCCCAACAAGAACCTGGTCTGCGCCACCAACGCCACCTACC ACTGCATCAAGGACAACTGCCCGCTCCTGCCTAACTCTGGGCAAGAGGACTTTGACAAGG ACGGCACTGGGGACGCCTGTGACGACGACGACGACAACGACGGCGTCAGTGATGAGAAGG ACAACTGCCAGCTTCTCTTCAACCCCCGTCAGTTTGACTACGACAAAGACGAGGTTGGGG ACCGCTGCGACAACTGCCCCTACGTGCACAACCCCGCACAGATCGACACCGACAGCAACG GGGAGGGCGATGCCTGCTCCGTGGACATCGACGGCGACGATGTCTTCAACGAGCGAGACA ACTGTCCCTACGTCTACAACACCGACCAGAGAGACACGGACGGCGACGGCGTGGGCGACC ACTGCGACAACTGCCCCCTGGTGCACAATCCCGACCAGACGGACGTGGACAACGACCTCG TGGGAGACCAGTGTGACAACAATGAGGACGTCGACGAGGACGGCCACCAGAACAACCAGG ACAACTGTCCCTACATCTCCAACGCCAACCAGGCCGACCACGACCACGACGGCAAGGGCG ACGCCTGCGACTCGGATGACGACAACGATGGGGTCCCGGATGACAGGGACAACTGCCGGC TAGTCGCCAACCCCGACCAGGAGGACTCGGACGGTGATGGGCGTGGCGACGCTTGTAAAG ACGACTTTGACAACGACAGCATCCCGGACATTGACGACGTGTGTCCCGAGAACAACGCCA TCAGCGAGACGGACTTCCGCAACTTCCAGATGGTGCCCCTGGACCCCAAGGGCACCACGC AGATCGATCCCAACTGGGTCATTCGCCACCAAGGCAAGGAGCTGGTGCAGACGGCCAACT CCGACCCCGGCATCGCTGTGGGTTTTGACGAGTTTGGGTCCGTGGACTTCAGCGGCACCT TCTACGTCAACACGGACCGGGACGACGACTACGCCGGCTTCGTCTTTGGCTACCAGTCCA GCAGCCGCTTCTACGTGGTGATGTGGAAGCAGGTGACGCAGACCTACTGGGAGGACCAGC CCACGCGGGCCT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 79 entry(ies) | More info |
| Aligned organism(s): 79 entry(ies) | Help | Less info |
| 30-272, gnl|bosTau2|chr10 (28063466-28063224) | |
| 30-272, gnl|canFam2|chr30 (9767670-9767903) | |
| 30-272, gnl|danRer3|chr20 (37334809-37335033) | |
| 30-272, gnl|dasNov1|scaffold_182967 (3770-4003) | |
| 30-272, gnl|echTel1|scaffold_285123 (50864-50631) | |
| 30-272, gnl|fr1|chrUn (107815581-107815808) | |
| 30-272, gnl|galGal2|chr5 (26521704-26521479) | |
| 30-272, gnl|hg17|chr15 (37669293-37669526) | |
| 30-272, gnl|Hg17|chr15 (37669295-37669541) | |
| 30-272, gnl|loxAfr1|scaffold_3458 (30389-30622) | |
| 30-272, gnl|mm7|chr2 (117860660-117860886) | |
| 30-272, gnl|Mm7|chr2 (117860662-117860886) | |
| 30-272, gnl|monDom2|scaffold_12 (3382038-3381806) | |
| 30-272, gnl|oryCun1|scaffold_186394 (4432-4665) | |
| 30-272, gnl|panTro1|chr16 (37554589-37554822) | |
| 30-272, gnl|rheMac2|chr7 (17880885-17881118) | |
| 30-272, gnl|rn3|chr1 (53601254-53601032) | |
| 30-272, gnl|tetNig1|chr14 (2110854-2111081) | |
| 30-272, gnl|xenTro1|scaffold_7 (538242-538468) | |
| 358-519, gnl|bosTau2|chr10 (28062107-28061946) | |
| 358-519, gnl|canFam2|chr30 (9769109-9769312) | |
| 358-519, gnl|danRer3|chr20 (37335637-37335816) | |
| 358-519, gnl|dasNov1|scaffold_1912 (53852-53664) | |
| 358-519, gnl|echTel1|scaffold_285123 (49469-49274) | |
| 358-519, gnl|fr1|chrUn (107816328-107816504) | |
| 358-519, gnl|galGal2|chr5 (26520511-26520320) | |
| 358-519, gnl|hg17|chr15 (37670669-37670879) | |
| 358-519, gnl|Hg17|chr15 (37670682-37670843) | |
| 358-519, gnl|loxAfr1|scaffold_3458 (31766-31978) | |
| 358-519, gnl|mm7|chr2 (117861671-117861877) | |
| 358-519, gnl|Mm7|chr2 (117861682-117861843) | |
| 358-519, gnl|monDom2|scaffold_12 (3380538-3380358) | |
| 358-519, gnl|oryCun1|scaffold_186394 (5784-5995) | |
| 358-519, gnl|panTro1|chr16 (37555966-37556176) | |
| 358-519, gnl|rheMac2|chr7 (17882262-17882472) | |
| 358-519, gnl|rn3|chr1 (53598786-53598598) | |
| 358-519, gnl|tetNig1|chr14 (2111620-2111788) | |
| 358-519, gnl|xenTro1|scaffold_7 (539375-539555) | |
| 523-650, gnl|bosTau2|chr10 (28061792-28061667) | |
| 523-650, gnl|canFam2|chr30 (9769416-9769554) | |
| 523-650, gnl|danRer3|chr20 (37336642-37336784) | |
| 523-650, gnl|dasNov1|scaffold_1912 (51315-51182) | |
| 523-650, gnl|echTel1|scaffold_285123 (49158-49020) | |
| 523-650, gnl|fr1|chrUn (107816622-107816765) | |
| 523-650, gnl|galGal2|chr5 (26519949-26519820) | |
| 523-650, gnl|hg17|chr15 (37670986-37671128) | |
| 523-650, gnl|Hg17|chr15 (37671001-37671130) | |
| 523-650, gnl|loxAfr1|scaffold_3458 (32090-32236) | |
| 523-650, gnl|mm7|chr2 (117861954-117862091) | |
| 523-650, gnl|Mm7|chr2 (117861968-117862093) | |
| 523-650, gnl|monDom2|scaffold_12 (3380279-3380141) | |
| 523-650, gnl|oryCun1|scaffold_186394 (6101-6239) | |
| 523-650, gnl|panTro1|chr16 (37556283-37556425) | |
| 523-650, gnl|rheMac2|chr7 (17882580-17882718) | |
| 523-650, gnl|rn3|chr1 (53596531-53596390) | |
| 523-650, gnl|tetNig1|chr14 (2111936-2112079) | |
| 523-650, gnl|xenTro1|scaffold_7 (539789-539930) | |
| 654-900, gnl|bosTau2|chr10 (28060066-28059821) | |
| 654-900, gnl|Hg17|chr15 (37672076-37672321) | |
| 654-900, gnl|Mm7|chr2 (117863309-117863554) | |
| 1101-1270, gnl|bosTau2|chr10 (28059263-28059094) | |
| 1101-1270, gnl|canFam2|chr30 (9772259-9772589) | |
| 1101-1270, gnl|danRer3|chr20 (37339396-37339724) | |
| 1101-1270, gnl|dasNov1|scaffold_21181 (19961-19628) | |
| 1101-1270, gnl|echTel1|scaffold_285123 (47287-46965) | |
| 1101-1270, gnl|fr1|chrUn (107818024-107818347) | |
| 1101-1270, gnl|galGal2|chr5 (26517697-26517379) | |
| 1101-1270, gnl|hg17|chr15 (37672848-37673180) | |
| 1101-1270, gnl|Hg17|chr15 (37672889-37673058) | |
| 1101-1270, gnl|loxAfr1|scaffold_3458 (34652-34985) | |
| 1101-1270, gnl|mm7|chr2 (117864074-117864403) | |
| 1101-1270, gnl|Mm7|chr2 (117864115-117864284) | |
| 1101-1270, gnl|monDom2|scaffold_12 (3377210-3376884) | |
| 1101-1270, gnl|oryCun1|scaffold_186394 (7760-8092) | |
| 1101-1270, gnl|panTro1|chr16 (37558143-37558475) | |
| 1101-1270, gnl|rheMac2|chr7 (17885150-17885482) | |
| 1101-1270, gnl|rn3|chr1 (53593035-53592695) | |
| 1101-1270, gnl|tetNig1|chr14 (2113291-2113595) | |
| 1101-1270, gnl|xenTro1|scaffold_7 (541725-542039) |
| Aligned organism(s): 79 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 30-272, gnl|bosTau2|chr10 (28063466-28063224) | |
| 30-272, gnl|canFam2|chr30 (9767670-9767903) | |
| 30-272, gnl|danRer3|chr20 (37334809-37335033) | |
| 30-272, gnl|dasNov1|scaffold_182967 (3770-4003) | |
| 30-272, gnl|echTel1|scaffold_285123 (50864-50631) | |
| 30-272, gnl|fr1|chrUn (107815581-107815808) | |
| 30-272, gnl|galGal2|chr5 (26521704-26521479) | |
| 30-272, gnl|hg17|chr15 (37669293-37669526) | |
| 30-272, gnl|Hg17|chr15 (37669295-37669541) | |
| 30-272, gnl|loxAfr1|scaffold_3458 (30389-30622) | |
| 30-272, gnl|mm7|chr2 (117860660-117860886) | |
| 30-272, gnl|Mm7|chr2 (117860662-117860886) | |
| 30-272, gnl|monDom2|scaffold_12 (3382038-3381806) | |
| 30-272, gnl|oryCun1|scaffold_186394 (4432-4665) | |
| 30-272, gnl|panTro1|chr16 (37554589-37554822) | |
| 30-272, gnl|rheMac2|chr7 (17880885-17881118) | |
| 30-272, gnl|rn3|chr1 (53601254-53601032) | |
| 30-272, gnl|tetNig1|chr14 (2110854-2111081) | |
| 30-272, gnl|xenTro1|scaffold_7 (538242-538468) | |
| 358-519, gnl|bosTau2|chr10 (28062107-28061946) | |
| 358-519, gnl|canFam2|chr30 (9769109-9769312) | |
| 358-519, gnl|danRer3|chr20 (37335637-37335816) | |
| 358-519, gnl|dasNov1|scaffold_1912 (53852-53664) | |
| 358-519, gnl|echTel1|scaffold_285123 (49469-49274) | |
| 358-519, gnl|fr1|chrUn (107816328-107816504) | |
| 358-519, gnl|galGal2|chr5 (26520511-26520320) | |
| 358-519, gnl|hg17|chr15 (37670669-37670879) | |
| 358-519, gnl|Hg17|chr15 (37670682-37670843) | |
| 358-519, gnl|loxAfr1|scaffold_3458 (31766-31978) | |
| 358-519, gnl|mm7|chr2 (117861671-117861877) | |
| 358-519, gnl|Mm7|chr2 (117861682-117861843) | |
| 358-519, gnl|monDom2|scaffold_12 (3380538-3380358) | |
| 358-519, gnl|oryCun1|scaffold_186394 (5784-5995) | |
| 358-519, gnl|panTro1|chr16 (37555966-37556176) | |
| 358-519, gnl|rheMac2|chr7 (17882262-17882472) | |
| 358-519, gnl|rn3|chr1 (53598786-53598598) | |
| 358-519, gnl|tetNig1|chr14 (2111620-2111788) | |
| 358-519, gnl|xenTro1|scaffold_7 (539375-539555) | |
| 523-650, gnl|bosTau2|chr10 (28061792-28061667) | |
| 523-650, gnl|canFam2|chr30 (9769416-9769554) | |
| 523-650, gnl|danRer3|chr20 (37336642-37336784) | |
| 523-650, gnl|dasNov1|scaffold_1912 (51315-51182) | |
| 523-650, gnl|echTel1|scaffold_285123 (49158-49020) | |
| 523-650, gnl|fr1|chrUn (107816622-107816765) | |
| 523-650, gnl|galGal2|chr5 (26519949-26519820) | |
| 523-650, gnl|hg17|chr15 (37670986-37671128) | |
| 523-650, gnl|Hg17|chr15 (37671001-37671130) | |
| 523-650, gnl|loxAfr1|scaffold_3458 (32090-32236) | |
| 523-650, gnl|mm7|chr2 (117861954-117862091) | |
| 523-650, gnl|Mm7|chr2 (117861968-117862093) | |
| 523-650, gnl|monDom2|scaffold_12 (3380279-3380141) | |
| 523-650, gnl|oryCun1|scaffold_186394 (6101-6239) | |
| 523-650, gnl|panTro1|chr16 (37556283-37556425) | |
| 523-650, gnl|rheMac2|chr7 (17882580-17882718) | |
| 523-650, gnl|rn3|chr1 (53596531-53596390) | |
| 523-650, gnl|tetNig1|chr14 (2111936-2112079) | |
| 523-650, gnl|xenTro1|scaffold_7 (539789-539930) | |
| 654-900, gnl|bosTau2|chr10 (28060066-28059821) | |
| 654-900, gnl|Hg17|chr15 (37672076-37672321) | |
| 654-900, gnl|Mm7|chr2 (117863309-117863554) | |
| 1101-1270, gnl|bosTau2|chr10 (28059263-28059094) | |
| 1101-1270, gnl|canFam2|chr30 (9772259-9772589) | |
| 1101-1270, gnl|danRer3|chr20 (37339396-37339724) | |
| 1101-1270, gnl|dasNov1|scaffold_21181 (19961-19628) | |
| 1101-1270, gnl|echTel1|scaffold_285123 (47287-46965) | |
| 1101-1270, gnl|fr1|chrUn (107818024-107818347) | |
| 1101-1270, gnl|galGal2|chr5 (26517697-26517379) | |
| 1101-1270, gnl|hg17|chr15 (37672848-37673180) | |
| 1101-1270, gnl|Hg17|chr15 (37672889-37673058) | |
| 1101-1270, gnl|loxAfr1|scaffold_3458 (34652-34985) | |
| 1101-1270, gnl|mm7|chr2 (117864074-117864403) | |
| 1101-1270, gnl|Mm7|chr2 (117864115-117864284) | |
| 1101-1270, gnl|monDom2|scaffold_12 (3377210-3376884) | |
| 1101-1270, gnl|oryCun1|scaffold_186394 (7760-8092) | |
| 1101-1270, gnl|panTro1|chr16 (37558143-37558475) | |
| 1101-1270, gnl|rheMac2|chr7 (17885150-17885482) | |
| 1101-1270, gnl|rn3|chr1 (53593035-53592695) | |
| 1101-1270, gnl|tetNig1|chr14 (2113291-2113595) | |
| 1101-1270, gnl|xenTro1|scaffold_7 (541725-542039) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| eep (0.122564) |