Non-Coding RNA Search

Ss1.1-Mixn-0010c15.5

Sequence:


               
               TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCATAGGTAAATCTTTTATTATT
CTGTAAAAGTTAACAAAATATACAGAATGAGACTTTCCCTTTTTTAAACTAATGTTACAA
ACTGGTATTATCATTACATATAAATACTATACTCTATGGCTGATCAGTATTCAGGTGCAG
GTCCAACAAGGTAGCCTCTAACTGTTAAGCAAAAAAAAGAAGAAAAGTTGACCCCAGCTC
CAGCGCATCCTCCCGCACTGCTTACCCTGAGTGATCCACTGCATGATCACAGGATTTCGT
CGACTGACCCGAAGGCCCGGGAAGGAGGTGGCGGGGGCATGTGTGGGAAGAGAGTGCTTC
AGACTCAGTTTTCAAAATTTTCACCCATCAGAAAACAAACATATAAGGATGGATCCTTCA
TAGAAATCAAGAGATCAATTTCAGCTAATTTCGAATGCAGAAAAAGTATGGCACAGCATA
TAAGCCACGATGTGGTGTAATTACACTGAATCTCATACCACATGCCAGCATGGAGTTAGT
TGTGCGGACTTTACAAGCATCTCTCCTTGATTCAGTCCCGCTCCAAGCATAAAACAGGAA
GTGATTCAATAATAATAAAAATCAGGCCTGTTTGGCACTATGATACAATCGGGGGACAAA
CCAGGGAGATGCCGCTGGTCGCAGCCCCAGAACATTCCCACTGAAGTAACTACTCTTTGT
AAAGGACCTGGGGGGCGGCGAGGGGTACGGGTTTGGAGGACTGCCAGCGAGCGAGCACGG
CCGGGGCCGGGGCCGGGGCCGCGAGGCCGTGCCCCTCACATGGCTTCGAACTCGTCGATG
CGCTGCTTGGTGTTGCCCTGGCGGATCTGGCGCAGCGTCTTGTACTTGTCCCGGCCTTGC
CTCATGTTCTCATTGTGGATGATGTCGTTGTGGGTCCTCTTGTTCTCGTCTCTGGCCTGG
GACAGCTCGTTGGTCAGCGTCATCAGCTGCCGCTGCACGCGCTCGTTCTTCTCGGCCTCG
GTGATGCGCTTCTCCTCGTTGCGGTCGTCCAGGATGCCCTCGCTGCACAGCTCGGCGCTG
TAGCCCGTGTACTCCGGGCTCTCCTCCGGCGGGCTCTCCTGCACGTGCAGGCTCACGGGC
TCGTAGACCGGGGGCGGCGGCGGGGGCGCCGTCATGACCAGGTGCAGCTCCTCCTTGGTC
TTCACCAGGTCATCCTGGGCCTCTTTGGCCCGGAGCTGCCACTCCTCCACCTCGTCCTCC
TTGCGTCGCCGAGCCTCCTCCAGGAGGGCGATCTTGGCAGTGTACTCGGCGAGTTCTGTG
GCCAGCTGCTCCTGGCTCTTTATCTGATCCACCGCCTGCCTCTCCAGCTCCTCCTTGGCG
CGCAGCGCAGCCACGCGGTCGGCCTCCAGGCGCTCGGCCTCCTCCTGCGCGCGCTTCCTC
TCCTCCTCCAGCTGCAGCGCCCGCTGGATCTGGTCGGAGAGCTCTCTCTCCGCCTTCCTG
GTCTTCTCCTCGTAGTCCTGAAGCCTGAGCATCAGCTCCTCCTTCTCGCGCATCATCTGC
TCCTTCTCTCTCTCCACCGTTTCCCTCCGTTTCTTCTCCGTTTCCAACTGCTGCCGCTCC
AGCTGCTTCTGGTGCTTCTCCTCCCGGGCCTGGGCCTTCATCTGCTGCACCTCGATGGTG
TCGGGCTTCCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCATAGGTAAATCTTTTATTATT
CTGTAAAAGTTAACAAAATATACAGAATGAGACTTTCCCTTTTTTAAACTAATGTTACAA
ACTGGTATTATCATTACATATAAATACTATACTCTATGGCTGATCAGTATTCAGGTGCAG
GTCCAACAAGGTAGCCTCTAACTGTTAAGCAAAAAAAAGAAGAAAAGTTGACCCCAGCTC
CAGCGCATCCTCCCGCACTGCTTACCCTGAGTGATCCACTGCATGATCACAGGATTTCGT
CGACTGACCCGAAGGCCCGGGAAGGAGGTGGCGGGGGCATGTGTGGGAAGAGAGTGCTTC
AGACTCAGTTTTCAAAATTTTCACCCATCAGAAAACAAACATATAAGGATGGATCCTTCA
TAGAAATCAAGAGATCAATTTCAGCTAATTTCGAATGCAGAAAAAGTATGGCACAGCATA
TAAGCCACGATGTGGTGTAATTACACTGAATCTCATACCACATGCCAGCATGGAGTTAGT
TGTGCGGACTTTACAAGCATCTCTCCTTGATTCAGTCCCGCTCCAAGCATAAAACAGGAA
GTGATTCAATAATAATAAAAATCAGGCCTGTTTGGCACTATGATACAATCGGGGGACAAA
CCAGGGAGATGCCGCTGGTCGCAGCCCCAGAACATTCCCACTGAAGTAACTACTCTTTGT
AAAGGACCTGGGGGGCGGCGAGGGGTACGGGTTTGGAGGACTGCCAGCGAGCGAGCACGG
CCGGGGCCGGGGCCGGGGCCGCGAGGCCGTGCCCCTCACATGGCTTCGAACTCGTCGATG
CGCTGCTTGGTGTTGCCCTGGCGGATCTGGCGCAGCGTCTTGTACTTGTCCCGGCCTTGC
CTCATGTTCTCATTGTGGATGATGTCGTTGTGGGTCCTCTTGTTCTCGTCTCTGGCCTGG
GACAGCTCGTTGGTCAGCGTCATCAGCTGCCGCTGCACGCGCTCGTTCTTCTCGGCCTCG
GTGATGCGCTTCTCCTCGTTGCGGTCGTCCAGGATGCCCTCGCTGCACAGCTCGGCGCTG
TAGCCCGTGTACTCCGGGCTCTCCTCCGGCGGGCTCTCCTGCACGTGCAGGCTCACGGGC
TCGTAGACCGGGGGCGGCGGCGGGGGCGCCGTCATGACCAGGTGCAGCTCCTCCTTGGTC
TTCACCAGGTCATCCTGGGCCTCTTTGGCCCGGAGCTGCCACTCCTCCACCTCGTCCTCC
TTGCGTCGCCGAGCCTCCTCCAGGAGGGCGATCTTGGCAGTGTACTCGGCGAGTTCTGTG
GCCAGCTGCTCCTGGCTCTTTATCTGATCCACCGCCTGCCTCTCCAGCTCCTCCTTGGCG
CGCAGCGCAGCCACGCGGTCGGCCTCCAGGCGCTCGGCCTCCTCCTGCGCGCGCTTCCTC
TCCTCCTCCAGCTGCAGCGCCCGCTGGATCTGGTCGGAGAGCTCTCTCTCCGCCTTCCTG
GTCTTCTCCTCGTAGTCCTGAAGCCTGAGCATCAGCTCCTCCTTCTCGCGCATCATCTGC
TCCTTCTCTCTCTCCACCGTTTCCCTCCGTTTCTTCTCCGTTTCCAACTGCTGCCGCTCC
AGCTGCTTCTGGTGCTTCTCCTCCCGGGCCTGGGCCTTCATCTGCTGCACCTCGATGGTG
TCGGGCTTCCTG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|56126|emb|CAA48004.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|56126|emb|CAA48004.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               559-656, - strand, RNAz p=0.5667

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               559-656, - strand, RNAz p=0.5667

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of J05021, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of J05021, -

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               34-981, gnl|bosTau2|chr9 (55935126-55936081)
               

               
               34-981, gnl|Hg17|chr6 (159157562-159158520)
               

               
               34-981, gnl|Mm7|chr17 (6278513-6279375)
               


               
               1322-1485, gnl|bosTau2|chr9 (55938015-55938178)
               

               
               1322-1485, gnl|Hg17|chr6 (159161224-159161387)
               

               
               1322-1485, gnl|Mm7|chr17 (6281327-6281490)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               34-981, gnl|bosTau2|chr9 (55935126-55936081)
               

               
               34-981, gnl|Hg17|chr6 (159157562-159158520)
               

               
               34-981, gnl|Mm7|chr17 (6278513-6279375)
               


               
               1322-1485, gnl|bosTau2|chr9 (55938015-55938178)
               

               
               1322-1485, gnl|Hg17|chr6 (159161224-159161387)
               

               
               1322-1485, gnl|Mm7|chr17 (6281327-6281490)

Expressed library(ies): 45 entry(ies)

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Expressed library(ies): 45 entry(ies)

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               cst (1.26033)
               

               
               amn (1.25313)
               

               
               cje (0.991408)
               

               
               sto (0.899119)
               

               
               bla (0.87043)
               

               
               eje (0.691836)
               

               
               jej (0.593531)
               

               
               pgl (0.592417)
               

               
               col (0.585023)
               

               
               fty (0.527519)
               

               
               ill (0.526778)
               

               
               sin (0.524843)
               

               
               nco (0.485201)
               

               
               med (0.465008)
               

               
               ton (0.351)
               

               
               cut (0.339847)
               

               
               ski (0.29347)
               

               
               cga (0.279096)
               

               
               sug (0.254582)
               

               
               eru (0.240096)
               

               
               tes (0.207814)
               

               
               aor (0.195274)
               

               
               nlu (0.191681)
               

               
               nep (0.183925)
               

               
               mgm (0.180343)
               

               
               mcp (0.170648)
               

               
               nje (0.16592)
               

               
               csp (0.161186)
               

               
               tbr (0.154178)
               

               
               cli (0.152812)
               

               
               eli (0.151814)
               

               
               cag (0.151194)
               

               
               lun (0.150489)
               

               
               fat (0.147427)
               

               
               pty (0.142714)
               

               
               csk (0.140746)
               

               
               hlv (0.139256)
               

               
               che (0.136314)
               

               
               nmm (0.132802)
               

               
               ute (0.132784)
               

               
               ova (0.129132)
               

               
               thg (0.126791)
               

               
               tra (0.123092)
               

               
               ebs (0.118301)
               

               
               jca (0.11396)

Expressed library(ies): 45 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cst (1.26033)
               

               
               amn (1.25313)
               

               
               cje (0.991408)
               

               
               sto (0.899119)
               

               
               bla (0.87043)
               

               
               eje (0.691836)
               

               
               jej (0.593531)
               

               
               pgl (0.592417)
               

               
               col (0.585023)
               

               
               fty (0.527519)
               

               
               ill (0.526778)
               

               
               sin (0.524843)
               

               
               nco (0.485201)
               

               
               med (0.465008)
               

               
               ton (0.351)
               

               
               cut (0.339847)
               

               
               ski (0.29347)
               

               
               cga (0.279096)
               

               
               sug (0.254582)
               

               
               eru (0.240096)
               

               
               tes (0.207814)
               

               
               aor (0.195274)
               

               
               nlu (0.191681)
               

               
               nep (0.183925)
               

               
               mgm (0.180343)
               

               
               mcp (0.170648)
               

               
               nje (0.16592)
               

               
               csp (0.161186)
               

               
               tbr (0.154178)
               

               
               cli (0.152812)
               

               
               eli (0.151814)
               

               
               cag (0.151194)
               

               
               lun (0.150489)
               

               
               fat (0.147427)
               

               
               pty (0.142714)
               

               
               csk (0.140746)
               

               
               hlv (0.139256)
               

               
               che (0.136314)
               

               
               nmm (0.132802)
               

               
               ute (0.132784)
               

               
               ova (0.129132)
               

               
               thg (0.126791)
               

               
               tra (0.123092)
               

               
               ebs (0.118301)
               

               
               jca (0.11396)

	34-981, gnl\|bosTau2\|chr9 (55935126-55936081)
	34-981, gnl\|Hg17\|chr6 (159157562-159158520)
	34-981, gnl\|Mm7\|chr17 (6278513-6279375)

	1322-1485, gnl\|bosTau2\|chr9 (55938015-55938178)
	1322-1485, gnl\|Hg17\|chr6 (159161224-159161387)
	1322-1485, gnl\|Mm7\|chr17 (6281327-6281490)

	cst (1.26033)
	amn (1.25313)
	cje (0.991408)
	sto (0.899119)
	bla (0.87043)
	eje (0.691836)
	jej (0.593531)
	pgl (0.592417)
	col (0.585023)
	fty (0.527519)
	ill (0.526778)
	sin (0.524843)
	nco (0.485201)
	med (0.465008)
	ton (0.351)
	cut (0.339847)
	ski (0.29347)
	cga (0.279096)
	sug (0.254582)
	eru (0.240096)
	tes (0.207814)
	aor (0.195274)
	nlu (0.191681)
	nep (0.183925)
	mgm (0.180343)
	mcp (0.170648)
	nje (0.16592)
	csp (0.161186)
	tbr (0.154178)
	cli (0.152812)
	eli (0.151814)
	cag (0.151194)
	lun (0.150489)
	fat (0.147427)
	pty (0.142714)
	csk (0.140746)
	hlv (0.139256)
	che (0.136314)
	nmm (0.132802)
	ute (0.132784)
	ova (0.129132)
	thg (0.126791)
	tra (0.123092)
	ebs (0.118301)
	jca (0.11396)