Ss1.1-Mixn-0010c21.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTGAGGGAATTCTTAGTACTGAGGTCCAGCCCAGATTTTAGATTTAAAATGTTCTGGTTA ACTACAGACCCCATAGTGGCAAGAAAACCTGGCCATTTAAAAACTAGATGAAGACTGCGT CTGTTTCCGTAACACAGATCTAATATGATAAAATGTCATCTGCTTTACTACTGCATCGCA GCAGAACAGTGTTCTTAACTGACCTAGATCATTCATTCTTCGCTACAATCATTCAGTAAA ATAACTGGCTTTTCCTAATCTGTATTAAAAGTACAATTTATGGGGACCTTTAGAAACCAG GATTAATAAGCATGAAATAGGAAAAGAGAACATGACCATGTGTTAGAAGAAATGTTATGC ACATCCTTATTATATGAACACGTACCACCATTGTGCGGCCAATGATGGAATGGTCTCCCG AGAGGGCGATCACAGAATCTTCGATGTACACAGTGGCCACACCATCTTTGCCAGCAGTCA CATTGCCCAGGTCTCCAACGTGCCTGACGGTGAAAACGCATTCGCGGGATTAGGACTGAT TTCCATTTAACTGCAGTTCATAAACTCAATTTAAAATGGACTGAGTCAGATAATCTAGGC TGGGCTAAGAGGAAGACGGAGTCTATATCAAACAGAACCCACTTTTCCAGAACGGCAACA TTCTGAAAATATGCAAGTTAAAAACAAGTAACTAGATGTTCTAGACACATAAGGCTTCAA ACAAGGTTTCACGTCTCTAAAGCAATGCTCCAGGCAGAGGCGTGGGATGGGGGTGCATCT CCAATTTCAGAGCTCAAGTACCGGGGTAAACCAATTCCTGGCCTGGCTAAGAGAGCTATG CCTCTAGGCCTCTGATAAAAAGGAAGGTAATCCTTGTCCTTAAATGTAATGTGTTCCTGA AAGGCTCTCAGAAAACATACAAATGGAATCTCACTGAATTTCCAATATCAAATTTTTATC TACAAAGCTTCTAATGTTTCACAGTGTTTTATTTTGCTAGCAGTTAACAATACTGTTACT CATGACATTTCCTGTATGAGTTCCCTCTGGCACTTGTATTAGTTCTATATTCAATAAATG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTGAGGGAATTCTTAGTACTGAGGTCCAGCCCAGATTTTAGATTTAAAATGTTCTGGTTA ACTACAGACCCCATAGTGGCAAGAAAACCTGGCCATTTAAAAACTAGATGAAGACTGCGT CTGTTTCCGTAACACAGATCTAATATGATAAAATGTCATCTGCTTTACTACTGCATCGCA GCAGAACAGTGTTCTTAACTGACCTAGATCATTCATTCTTCGCTACAATCATTCAGTAAA ATAACTGGCTTTTCCTAATCTGTATTAAAAGTACAATTTATGGGGACCTTTAGAAACCAG GATTAATAAGCATGAAATAGGAAAAGAGAACATGACCATGTGTTAGAAGAAATGTTATGC ACATCCTTATTATATGAACACGTACCACCATTGTGCGGCCAATGATGGAATGGTCTCCCG AGAGGGCGATCACAGAATCTTCGATGTACACAGTGGCCACACCATCTTTGCCAGCAGTCA CATTGCCCAGGTCTCCAACGTGCCTGACGGTGAAAACGCATTCGCGGGATTAGGACTGAT TTCCATTTAACTGCAGTTCATAAACTCAATTTAAAATGGACTGAGTCAGATAATCTAGGC TGGGCTAAGAGGAAGACGGAGTCTATATCAAACAGAACCCACTTTTCCAGAACGGCAACA TTCTGAAAATATGCAAGTTAAAAACAAGTAACTAGATGTTCTAGACACATAAGGCTTCAA ACAAGGTTTCACGTCTCTAAAGCAATGCTCCAGGCAGAGGCGTGGGATGGGGGTGCATCT CCAATTTCAGAGCTCAAGTACCGGGGTAAACCAATTCCTGGCCTGGCTAAGAGAGCTATG CCTCTAGGCCTCTGATAAAAAGGAAGGTAATCCTTGTCCTTAAATGTAATGTGTTCCTGA AAGGCTCTCAGAAAACATACAAATGGAATCTCACTGAATTTCCAATATCAAATTTTTATC TACAAAGCTTCTAATGTTTCACAGTGTTTTATTTTGCTAGCAGTTAACAATACTGTTACT CATGACATTTCCTGTATGAGTTCCCTCTGGCACTTGTATTAGTTCTATATTCAATAAATG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 341-459, - strand, RNAz p=0.871763 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 341-459, - strand, RNAz p=0.871763 |
| Aligned organism(s): 32 entry(ies) | More info |
| Aligned organism(s): 32 entry(ies) | Help | Less info |
| 146-769, gnl|bosTau2|chr1 (2829946-2829327) | |
| 146-769, gnl|Hg17|chr21 (31961790-31961254) | |
| 146-769, gnl|Mm7|chr16 (90275417-90274825) | |
| 379-505, gnl|bosTau2|chr13 (33706819-33706945) | |
| 379-505, gnl|canFam2|chr31 (29562047-29562165) | |
| 379-505, gnl|danRer3|chr10 (18660467-18660585) | |
| 379-505, gnl|dasNov1|scaffold_28236 (6608-6726) | |
| 379-505, gnl|echTel1|scaffold_246332 (6110-6187) | |
| 379-505, gnl|fr1|chrUn (133389495-133389377) | |
| 379-505, gnl|hg17|chr16 (49699211-49699328) | |
| 379-505, gnl|Hg17|chr21 (31962661-31961440) | |
| 379-505, gnl|loxAfr1|scaffold_36343 (10569-10687) | |
| 379-505, gnl|mm7|chr6 (67188056-67188174) | |
| 379-505, gnl|Mm7|chr6 (67188181-67188055) | |
| 379-505, gnl|oryCun1|scaffold_205787 (39174-39279) | |
| 379-505, gnl|panTro1|chrUn_random (13520146-13520263) | |
| 379-505, gnl|rheMac2|chr20 (49325725-49325843) | |
| 379-505, gnl|rn3|chr11 (29812034-29811916) | |
| 379-505, gnl|tetNig1|chr7 (2984082-2984200) | |
| 813-1078, gnl|bosTau2|chr1 (2829259-2828982) | |
| 813-1078, gnl|canFam2|chr31 (29561424-29561783) | |
| 813-1078, gnl|dasNov1|scaffold_28236 (6030-6389) | |
| 813-1078, gnl|echTel1|scaffold_284939 (4131-4480) | |
| 813-1078, gnl|hg17|chr21 (31960890-31961247) | |
| 813-1078, gnl|Hg17|chr21 (31961197-31960927) | |
| 813-1078, gnl|loxAfr1|scaffold_18355 (4650-5002) | |
| 813-1078, gnl|mm7|chr16 (90274521-90274860) | |
| 813-1078, gnl|Mm7|chr16 (90274784-90274558) | |
| 813-1078, gnl|monDom2|scaffold_29 (10747752-10747343) | |
| 813-1078, gnl|panTro1|chr22 (31935140-31935491) | |
| 813-1078, gnl|rheMac2|chr3 (14842602-14842246) | |
| 813-1078, gnl|rn3|chr11 (29812559-29812234) |
| Aligned organism(s): 32 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 146-769, gnl|bosTau2|chr1 (2829946-2829327) | |
| 146-769, gnl|Hg17|chr21 (31961790-31961254) | |
| 146-769, gnl|Mm7|chr16 (90275417-90274825) | |
| 379-505, gnl|bosTau2|chr13 (33706819-33706945) | |
| 379-505, gnl|canFam2|chr31 (29562047-29562165) | |
| 379-505, gnl|danRer3|chr10 (18660467-18660585) | |
| 379-505, gnl|dasNov1|scaffold_28236 (6608-6726) | |
| 379-505, gnl|echTel1|scaffold_246332 (6110-6187) | |
| 379-505, gnl|fr1|chrUn (133389495-133389377) | |
| 379-505, gnl|hg17|chr16 (49699211-49699328) | |
| 379-505, gnl|Hg17|chr21 (31962661-31961440) | |
| 379-505, gnl|loxAfr1|scaffold_36343 (10569-10687) | |
| 379-505, gnl|mm7|chr6 (67188056-67188174) | |
| 379-505, gnl|Mm7|chr6 (67188181-67188055) | |
| 379-505, gnl|oryCun1|scaffold_205787 (39174-39279) | |
| 379-505, gnl|panTro1|chrUn_random (13520146-13520263) | |
| 379-505, gnl|rheMac2|chr20 (49325725-49325843) | |
| 379-505, gnl|rn3|chr11 (29812034-29811916) | |
| 379-505, gnl|tetNig1|chr7 (2984082-2984200) | |
| 813-1078, gnl|bosTau2|chr1 (2829259-2828982) | |
| 813-1078, gnl|canFam2|chr31 (29561424-29561783) | |
| 813-1078, gnl|dasNov1|scaffold_28236 (6030-6389) | |
| 813-1078, gnl|echTel1|scaffold_284939 (4131-4480) | |
| 813-1078, gnl|hg17|chr21 (31960890-31961247) | |
| 813-1078, gnl|Hg17|chr21 (31961197-31960927) | |
| 813-1078, gnl|loxAfr1|scaffold_18355 (4650-5002) | |
| 813-1078, gnl|mm7|chr16 (90274521-90274860) | |
| 813-1078, gnl|Mm7|chr16 (90274784-90274558) | |
| 813-1078, gnl|monDom2|scaffold_29 (10747752-10747343) | |
| 813-1078, gnl|panTro1|chr22 (31935140-31935491) | |
| 813-1078, gnl|rheMac2|chr3 (14842602-14842246) | |
| 813-1078, gnl|rn3|chr11 (29812559-29812234) |
| Expressed library(ies): 5 entry(ies) | More info |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
| tes (0.207814) | |
| liv (0.146284) | |
| ret (0.128733) | |
| sug (0.127291) | |
| ldo (0.0970026) |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| tes (0.207814) | |
| liv (0.146284) | |
| ret (0.128733) | |
| sug (0.127291) | |
| ldo (0.0970026) |