Non-Coding RNA Search

Ss1.1-Mixn-0010d15.5

Sequence:


               
               TGGAGGATTAGGTAACATGTCTGGACGCGGCAAGGGCGGCAAGGGCCTGGGAAAAGGTGG
CGCCAAGCGCCACCGCAAGGTGCTGCGAGACAACATCCAGGGCATCACCAAGCCCGCCAT
CCGGCGCCTGGCTCGGCGCGGCGGCGTCAAGCGCATCTCCGGCCTCATCTACGAGGAGAC
CCGCGGGGTGCTGAAGGTGTTCCTGGAGAACGTGATCCGGGACGCCGTCACCTACACCGA
GCACGCCAAGCGCAAGACCGTCACCGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGG
ACGCACCCTCTACGGCTTCGGCGGCTAAAAACTTAGGTCTTTATTTCCTGCATAGAAAAA
GGCCCTTTTCAGGGCCGCCCACTTTTTCACAGAGGGGACTGTACCTAACTTGCGTTTTAG
AGTGTTATTTATAAATGTTTAGTTTTAATGATAACATAGTGGTAATAATTAGGCCCAGCG
GTTGCTCGTTCACCAGGTTTAGCCAATCGCCAGCTATACGCTAAGAGTAGAGGGTATTCT
CAGTGGACAAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGAGGATTAGGTAACATGTCTGGACGCGGCAAGGGCGGCAAGGGCCTGGGAAAAGGTGG
CGCCAAGCGCCACCGCAAGGTGCTGCGAGACAACATCCAGGGCATCACCAAGCCCGCCAT
CCGGCGCCTGGCTCGGCGCGGCGGCGTCAAGCGCATCTCCGGCCTCATCTACGAGGAGAC
CCGCGGGGTGCTGAAGGTGTTCCTGGAGAACGTGATCCGGGACGCCGTCACCTACACCGA
GCACGCCAAGCGCAAGACCGTCACCGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGG
ACGCACCCTCTACGGCTTCGGCGGCTAAAAACTTAGGTCTTTATTTCCTGCATAGAAAAA
GGCCCTTTTCAGGGCCGCCCACTTTTTCACAGAGGGGACTGTACCTAACTTGCGTTTTAG
AGTGTTATTTATAAATGTTTAGTTTTAATGATAACATAGTGGTAATAATTAGGCCCAGCG
GTTGCTCGTTCACCAGGTTTAGCCAATCGCCAGCTATACGCTAAGAGTAGAGGGTATTCT
CAGTGGACAAAT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q6AZG5_XENLA

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q6AZG5_XENLA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               88-207, - strand, RNAz p=0.657372
               

               
               275-388, - strand, RNAz p=0.999217

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               88-207, - strand, RNAz p=0.657372
               

               
               275-388, - strand, RNAz p=0.999217

ncRNA annotation: 1 entry(ies)

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ncRNA annotation: 1 entry(ies)

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               356-381, , RaveNnA Score=32.99

ncRNA annotation: 1 entry(ies)

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PigEST conread start position and end position of sequence/structure similarity to an annotated RNA family,
RNA family (possibly sequence identifier),
blast E-value (sequence sim.) or RaveNnA score (structure sim.)


               
               356-381, , RaveNnA Score=32.99

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               8-388, gnl|bosTau2|chr12 (1655870-1655486)
               

               
               8-388, gnl|Hg17|chr6 (26355193-26354811)
               


               
               16-328, gnl|bosTau2|chr11 (65312644-65312332)
               

               
               16-328, gnl|Hg17|chr6 (26129885-26130197)
               

               
               16-328, gnl|Mm7|chr13 (22897103-22897415)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               8-388, gnl|bosTau2|chr12 (1655870-1655486)
               

               
               8-388, gnl|Hg17|chr6 (26355193-26354811)
               


               
               16-328, gnl|bosTau2|chr11 (65312644-65312332)
               

               
               16-328, gnl|Hg17|chr6 (26129885-26130197)
               

               
               16-328, gnl|Mm7|chr13 (22897103-22897415)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               nep (0.183925)
               

               
               eye (0.170503)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nep (0.183925)
               

               
               eye (0.170503)

	88-207, - strand, RNAz p=0.657372
	275-388, - strand, RNAz p=0.999217

	8-388, gnl\|bosTau2\|chr12 (1655870-1655486)
	8-388, gnl\|Hg17\|chr6 (26355193-26354811)

	16-328, gnl\|bosTau2\|chr11 (65312644-65312332)
	16-328, gnl\|Hg17\|chr6 (26129885-26130197)
	16-328, gnl\|Mm7\|chr13 (22897103-22897415)