Non-Coding RNA Search

Ss1.1-Mixn-0010g17.5

Sequence:


               
               CTCCTCGTCGTACTTGGACAGGATAGAGCGGGGTTTCTGCTGGGCCAAGTCGTCCACGCT
CTCGTTCTCCGCGTACGGCGAGTAGTCGGGCTTCCTCTTGCGCAGCTCCACGTTTTTCTC
CGCCCGCTCCTTGTCTAGCAGGTTCACGTTCACCAGCACGTCCTCCTCCTCCTGCAGCAC
CCCTTTGTCCTTGAGGGTGAGGATCATCGTCTCCCCCTCTCGGAAGGCGTCGATGGCGTG
CTCCACGGTGAGGCCCTGCAGGTCCCGGGCGCTGTACAGGTCCTGCCGCCTCTGCTCGAA
CTCTTCCTCCACCAGGGTGCTGACACCAAACTCCTGGTCCATCTCCTCCAGCAGCTTGGC
CCTCTTCTCTGCCAGGTCCTTCTCCTTCTGAAGCTGCCGGCTCCTCTCGATCCAGGCTGC
AGTGTCGTCCAGCCAGGGGTCATCCTCCCCCAGAGTCTTTATCTTCCCCAGCTTCTGGTT
GAGGAGGCGCTTTTCTTTGGCAGCCGCCAGCTTCTCTCGGAGTTCTTCTCGCTGTCGCAA
GGCCATGGGGTTGATGACATCGGCAGTCACGGGCTCCTCCTTGGTGCCCGCCTCCTTCTT
GACGGCATTGACTTCCAAGGGTTTCAGCCCCAACTTTGCCCGGAGTTTATTGGTCTCCTC
GATGCTGAGTGACGAGGCATCGCCCGAGCTAGTCTTGGAGCTGGCAGCGGCCTCGTAGCC
TTCATCTCGCTTCTCCCGCTTCACGCGGCGCTCGGAGGGCTCTGTCTGGCTACGCTCCCG
CCCGTGCGTGCTGCTGCGGGCCTCCGCTTCGGCCCCGCGCCGTCCGCTCCCGCGTTCGCT
CCCACGCTCCCGGCTCCGCTTTCGTCGTTCGCCACCGCTGCTGCCGCCGCCGCTGCTCCG
GTGCTTGTGTTTTTTGTGCTCCCGGTGCCGAGGCGGCTGCTCGGTGGCGCTCCCGGTGCT
CGCTCCTGCCGTAGTCCCGGCCGCCTCCTTCTCCCCGCGGTGCTTCTTTGACGACCCCAT
GGTGGTAGGTCCACCCGAGCCCCGCCGCCGCCGCCGCCACCGCCGCCGCCGAGCCCCGAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCCTCGTCGTACTTGGACAGGATAGAGCGGGGTTTCTGCTGGGCCAAGTCGTCCACGCT
CTCGTTCTCCGCGTACGGCGAGTAGTCGGGCTTCCTCTTGCGCAGCTCCACGTTTTTCTC
CGCCCGCTCCTTGTCTAGCAGGTTCACGTTCACCAGCACGTCCTCCTCCTCCTGCAGCAC
CCCTTTGTCCTTGAGGGTGAGGATCATCGTCTCCCCCTCTCGGAAGGCGTCGATGGCGTG
CTCCACGGTGAGGCCCTGCAGGTCCCGGGCGCTGTACAGGTCCTGCCGCCTCTGCTCGAA
CTCTTCCTCCACCAGGGTGCTGACACCAAACTCCTGGTCCATCTCCTCCAGCAGCTTGGC
CCTCTTCTCTGCCAGGTCCTTCTCCTTCTGAAGCTGCCGGCTCCTCTCGATCCAGGCTGC
AGTGTCGTCCAGCCAGGGGTCATCCTCCCCCAGAGTCTTTATCTTCCCCAGCTTCTGGTT
GAGGAGGCGCTTTTCTTTGGCAGCCGCCAGCTTCTCTCGGAGTTCTTCTCGCTGTCGCAA
GGCCATGGGGTTGATGACATCGGCAGTCACGGGCTCCTCCTTGGTGCCCGCCTCCTTCTT
GACGGCATTGACTTCCAAGGGTTTCAGCCCCAACTTTGCCCGGAGTTTATTGGTCTCCTC
GATGCTGAGTGACGAGGCATCGCCCGAGCTAGTCTTGGAGCTGGCAGCGGCCTCGTAGCC
TTCATCTCGCTTCTCCCGCTTCACGCGGCGCTCGGAGGGCTCTGTCTGGCTACGCTCCCG
CCCGTGCGTGCTGCTGCGGGCCTCCGCTTCGGCCCCGCGCCGTCCGCTCCCGCGTTCGCT
CCCACGCTCCCGGCTCCGCTTTCGTCGTTCGCCACCGCTGCTGCCGCCGCCGCTGCTCCG
GTGCTTGTGTTTTTTGTGCTCCCGGTGCCGAGGCGGCTGCTCGGTGGCGCTCCCGGTGCT
CGCTCCTGCCGTAGTCCCGGCCGCCTCCTTCTCCCCGCGGTGCTTCTTTGACGACCCCAT
GGTGGTAGGTCCACCCGAGCCCCGCCGCCGCCGCCGCCACCGCCGCCGCCGAGCCCCGAC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q9CUU9_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q9CUU9_MOUSE

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               40-184, gnl|bosTau2|chr29 (30564635-30564491)
               

               
               40-184, gnl|Hg17|chr11 (65490265-65490121)
               

               
               40-184, gnl|Mm7|chr19 (5278741-5278885)
               


               
               466-594, gnl|bosTau2|chr29 (30563646-30563518)
               

               
               466-594, gnl|canFam2|chr18 (54336118-54335977)
               

               
               466-594, gnl|danRer3|chr21 (22156170-22156027)
               

               
               466-594, gnl|dasNov1|scaffold_47886 (3595-3735)
               

               
               466-594, gnl|hg17|chr11 (65489134-65489274)
               

               
               466-594, gnl|Hg17|chr11 (65489266-65489138)
               

               
               466-594, gnl|mm7|chr19 (5279762-5279621)
               

               
               466-594, gnl|Mm7|chr19 (5279628-5279756)
               

               
               466-594, gnl|panTro1|chr9 (66741012-66741152)
               

               
               466-594, gnl|rheMac2|chr14 (8484127-8483987)
               

               
               466-594, gnl|rn3|chr1 (208185142-208185001)
               

               
               466-594, gnl|tetNig1|chr18 (7680089-7679963)
               

               
               466-594, gnl|xenTro1|scaffold_502 (616890-616753)
               


               
               705-1069, gnl|bosTau2|chr29 (30560436-30560073)
               

               
               705-1069, gnl|Hg17|chr11 (65486143-65485780)
               

               
               705-1069, gnl|Mm7|chr19 (5283118-5283483)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               40-184, gnl|bosTau2|chr29 (30564635-30564491)
               

               
               40-184, gnl|Hg17|chr11 (65490265-65490121)
               

               
               40-184, gnl|Mm7|chr19 (5278741-5278885)
               


               
               466-594, gnl|bosTau2|chr29 (30563646-30563518)
               

               
               466-594, gnl|canFam2|chr18 (54336118-54335977)
               

               
               466-594, gnl|danRer3|chr21 (22156170-22156027)
               

               
               466-594, gnl|dasNov1|scaffold_47886 (3595-3735)
               

               
               466-594, gnl|hg17|chr11 (65489134-65489274)
               

               
               466-594, gnl|Hg17|chr11 (65489266-65489138)
               

               
               466-594, gnl|mm7|chr19 (5279762-5279621)
               

               
               466-594, gnl|Mm7|chr19 (5279628-5279756)
               

               
               466-594, gnl|panTro1|chr9 (66741012-66741152)
               

               
               466-594, gnl|rheMac2|chr14 (8484127-8483987)
               

               
               466-594, gnl|rn3|chr1 (208185142-208185001)
               

               
               466-594, gnl|tetNig1|chr18 (7680089-7679963)
               

               
               466-594, gnl|xenTro1|scaffold_502 (616890-616753)
               


               
               705-1069, gnl|bosTau2|chr29 (30560436-30560073)
               

               
               705-1069, gnl|Hg17|chr11 (65486143-65485780)
               

               
               705-1069, gnl|Mm7|chr19 (5283118-5283483)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               pla (0.133672)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.133672)

	40-184, gnl\|bosTau2\|chr29 (30564635-30564491)
	40-184, gnl\|Hg17\|chr11 (65490265-65490121)
	40-184, gnl\|Mm7\|chr19 (5278741-5278885)

	466-594, gnl\|bosTau2\|chr29 (30563646-30563518)
	466-594, gnl\|canFam2\|chr18 (54336118-54335977)
	466-594, gnl\|danRer3\|chr21 (22156170-22156027)
	466-594, gnl\|dasNov1\|scaffold_47886 (3595-3735)
	466-594, gnl\|hg17\|chr11 (65489134-65489274)
	466-594, gnl\|Hg17\|chr11 (65489266-65489138)
	466-594, gnl\|mm7\|chr19 (5279762-5279621)
	466-594, gnl\|Mm7\|chr19 (5279628-5279756)
	466-594, gnl\|panTro1\|chr9 (66741012-66741152)
	466-594, gnl\|rheMac2\|chr14 (8484127-8483987)
	466-594, gnl\|rn3\|chr1 (208185142-208185001)
	466-594, gnl\|tetNig1\|chr18 (7680089-7679963)
	466-594, gnl\|xenTro1\|scaffold_502 (616890-616753)

	705-1069, gnl\|bosTau2\|chr29 (30560436-30560073)
	705-1069, gnl\|Hg17\|chr11 (65486143-65485780)
	705-1069, gnl\|Mm7\|chr19 (5283118-5283483)