Ss1.1-Mixn-0010g20.5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ACAAAAGCTCTTCAGAGAAGTAAGAATAATGAAGATTTTAAATCATCCAAACATAGTGAA GTTATTCGAAGTCATTGAAACTGACAAAACGCTCTACCTAATCATGGAGTATGCAAGCGG AGGTGAAGTATTTGACTATTTGGTTGCACATGGAAGAATGAAGGAAAAGGAAGCAAGAGC TAAATTTAGACAGATAGTGTCTGCAGTCCAGTACTGCCACCAAAAGAGGATCGTTCACAG AGACCTCAAGGCTGAAAATCTATTGTTAGATGCGGACATGAACATTAAAATAGCCGACTT TGGTTTCAGCAATGAGTTTGCTCTTGGCGGTAAGCTGGATACGTTCTGCGGCAGTCCTCC GTACGCCGCCCCAGAACTCTTCCAGGGCAAGAAATACGACGGGCCGGAGGTGGACGTGTG GAGCCTCGGCGTCATTCTGTACACGCTCGTCAGCGGCTCCCTCCCCTTCGATGGACAGAA CCTGAAGGAACTGAGAGAGAGAGTATTGAGAGGCAAATACAGAATCCCTTTCTACATGTC CACAGACTGTGAAAACCTTCTCAAACGCTTCCTGGTGCTAAATCCAATAAAACGGGGCAC GCTAGAGCAAATCATGAAGGACAGGTGGATCAACGCAGGGCATGAGGAGGACGAACTTAA GCCATTTGTTGAACCCGAACTGGACATTGCAGACCAGAAAAGAATAGATATTATGGTGGG AATGGGATATTCACAAGAAGAAATTCAAGAATCTCTTAGTAAGATGAAATATGATGAAAT CACAGCTACATATTTGTTGTTGGGGAGAAAATCTTCAGAGCTGGATGCTAGTGATTCCAG TTCTAGCAGCAATCTTTCACTTGCTAAGGTTAGGCCAAGCAGTGACCTCAACAACAGCAC TGGCCAGTCTCCTCACCACAAAGTGCAAAGAAGTGTCTCTTCAAGCCAGAAGCAGCGGCG GTACAGTGACCATGCTGGACCAGCCGTTCCTTCAGTTGTGGCGTATCCAAAAAGGAGCCA GACGAGCACTGCAGATAGCGACCTCAAAGAAGATGGAATTCCCTCCCGGAAACCAAGTGG CAGTGCTGTTGGAGGAAAGGGAATCGCTCCTGCCAGTCCCATGCTTGGGAATGCAAGTAA TCCCAATAAGGCGGATATTCCTGAACGTAAGAAAAGCTCCACTGTCCCAAGTAGTAATAC AGCATCCGGTGGAATGACACGGCGGAATACTTATGTTTGCAGTGAAAGAACTACAGCTGA TAGACATTCAGTAATTCAGAATGGCAAAGAAAACAGCGCTGTTCCTGACCAGAGAGCGCC AGTTGCTTCAACACACAGTATTAGCAGTGCCACCACCCCAGACCGAACACGCTTCCCAAG AGGCACTGCCAGTCGAAGTACTTTCCACGGCCAGCCCCGGGAGCGGCGCACTGCCACATA CAATGGCCCGCCAGCCTCGCCCAGCCTGTCCCATGAAGCCACACCATTGTCGCAGAATCG AAGCCGAGGCTCCACTAATCTTTTTAGTAAATTAACTTCCAAACTCACAAGGAGTCGCAA CGTATCTGCTGAGCAAAAGGAGGAAAACAAAGAAGCAAAACCTCGTTCCCTTCGCTTTAC CTGGAGCATGAAAACCACTAGTTCCATGGATCCCAATGACATGATGCGGGAAATCCGCAA AGTGCTGGACGCCAATAACTGCGACTATGAGCAGAGAGAGCGCTTCCTACTCTTCTGTGT CCACGGCGATGGGCACGCAGAGAACCTCGTGCAGTGGGAGATGGAGGTGTGCAAGCTGCC AAGACTGTCTCTGAACGGGGTCCGATTCAAGCGGATATCAGGGACATCCATAGCTTTCAA AAATATTGCTTCCAAAATTGCCAATGAGCTAAAGCTGTAACCCAGTCATTATGGTGTAAA TTAAGTAGCAGTTTAAAGTGTTTTCCTGAACACTGATGGAAATGTATAGAATAATATTTA GGCAATAACGTCTGCATCTTCTAAATCATGATATTAAAATATAAGGACGCGAGCACGCCT GGGAGCGAAGCTGGCCTTTTTTCTACGAATGCACTACATTAAAGACGTGTGACACGTGAA CCCTCTGTCTTCTTTCCATTGCCCTGGAAGTCAGCACGTGCTGCCATCTCCACGTGCCTC CTGTCTGTGCGGGTGTGAGAGTGGACGGTGTGTGTGCGAAGCACTGCTGCCACAGCAGCT CCTCCCACGGGCAGGGTTGCTTCAGGTACCTCTGCGGGAGGTCGTTTGGTGCTAAAACAT TAAAATTGCCAAGGAGGAAGATACTCAGTTACTACTAAAAATTAACTTTGAGACTAGTTG ATAATTAATACAGGTTTACAGTTCATGCCTGTGGTTTTGTGTTTGTTTCGTGTTTTTTAG TGCAAAAGGTTTCAATTTATAGTTGTGAACATTGCTTGTGTGTTTTTCTAAGTAGATTCA CAAGACAATTAAAAATTCACTTTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ACAAAAGCTCTTCAGAGAAGTAAGAATAATGAAGATTTTAAATCATCCAAACATAGTGAA GTTATTCGAAGTCATTGAAACTGACAAAACGCTCTACCTAATCATGGAGTATGCAAGCGG AGGTGAAGTATTTGACTATTTGGTTGCACATGGAAGAATGAAGGAAAAGGAAGCAAGAGC TAAATTTAGACAGATAGTGTCTGCAGTCCAGTACTGCCACCAAAAGAGGATCGTTCACAG AGACCTCAAGGCTGAAAATCTATTGTTAGATGCGGACATGAACATTAAAATAGCCGACTT TGGTTTCAGCAATGAGTTTGCTCTTGGCGGTAAGCTGGATACGTTCTGCGGCAGTCCTCC GTACGCCGCCCCAGAACTCTTCCAGGGCAAGAAATACGACGGGCCGGAGGTGGACGTGTG GAGCCTCGGCGTCATTCTGTACACGCTCGTCAGCGGCTCCCTCCCCTTCGATGGACAGAA CCTGAAGGAACTGAGAGAGAGAGTATTGAGAGGCAAATACAGAATCCCTTTCTACATGTC CACAGACTGTGAAAACCTTCTCAAACGCTTCCTGGTGCTAAATCCAATAAAACGGGGCAC GCTAGAGCAAATCATGAAGGACAGGTGGATCAACGCAGGGCATGAGGAGGACGAACTTAA GCCATTTGTTGAACCCGAACTGGACATTGCAGACCAGAAAAGAATAGATATTATGGTGGG AATGGGATATTCACAAGAAGAAATTCAAGAATCTCTTAGTAAGATGAAATATGATGAAAT CACAGCTACATATTTGTTGTTGGGGAGAAAATCTTCAGAGCTGGATGCTAGTGATTCCAG TTCTAGCAGCAATCTTTCACTTGCTAAGGTTAGGCCAAGCAGTGACCTCAACAACAGCAC TGGCCAGTCTCCTCACCACAAAGTGCAAAGAAGTGTCTCTTCAAGCCAGAAGCAGCGGCG GTACAGTGACCATGCTGGACCAGCCGTTCCTTCAGTTGTGGCGTATCCAAAAAGGAGCCA GACGAGCACTGCAGATAGCGACCTCAAAGAAGATGGAATTCCCTCCCGGAAACCAAGTGG CAGTGCTGTTGGAGGAAAGGGAATCGCTCCTGCCAGTCCCATGCTTGGGAATGCAAGTAA TCCCAATAAGGCGGATATTCCTGAACGTAAGAAAAGCTCCACTGTCCCAAGTAGTAATAC AGCATCCGGTGGAATGACACGGCGGAATACTTATGTTTGCAGTGAAAGAACTACAGCTGA TAGACATTCAGTAATTCAGAATGGCAAAGAAAACAGCGCTGTTCCTGACCAGAGAGCGCC AGTTGCTTCAACACACAGTATTAGCAGTGCCACCACCCCAGACCGAACACGCTTCCCAAG AGGCACTGCCAGTCGAAGTACTTTCCACGGCCAGCCCCGGGAGCGGCGCACTGCCACATA CAATGGCCCGCCAGCCTCGCCCAGCCTGTCCCATGAAGCCACACCATTGTCGCAGAATCG AAGCCGAGGCTCCACTAATCTTTTTAGTAAATTAACTTCCAAACTCACAAGGAGTCGCAA CGTATCTGCTGAGCAAAAGGAGGAAAACAAAGAAGCAAAACCTCGTTCCCTTCGCTTTAC CTGGAGCATGAAAACCACTAGTTCCATGGATCCCAATGACATGATGCGGGAAATCCGCAA AGTGCTGGACGCCAATAACTGCGACTATGAGCAGAGAGAGCGCTTCCTACTCTTCTGTGT CCACGGCGATGGGCACGCAGAGAACCTCGTGCAGTGGGAGATGGAGGTGTGCAAGCTGCC AAGACTGTCTCTGAACGGGGTCCGATTCAAGCGGATATCAGGGACATCCATAGCTTTCAA AAATATTGCTTCCAAAATTGCCAATGAGCTAAAGCTGTAACCCAGTCATTATGGTGTAAA TTAAGTAGCAGTTTAAAGTGTTTTCCTGAACACTGATGGAAATGTATAGAATAATATTTA GGCAATAACGTCTGCATCTTCTAAATCATGATATTAAAATATAAGGACGCGAGCACGCCT GGGAGCGAAGCTGGCCTTTTTTCTACGAATGCACTACATTAAAGACGTGTGACACGTGAA CCCTCTGTCTTCTTTCCATTGCCCTGGAAGTCAGCACGTGCTGCCATCTCCACGTGCCTC CTGTCTGTGCGGGTGTGAGAGTGGACGGTGTGTGTGCGAAGCACTGCTGCCACAGCAGCT CCTCCCACGGGCAGGGTTGCTTCAGGTACCTCTGCGGGAGGTCGTTTGGTGCTAAAACAT TAAAATTGCCAAGGAGGAAGATACTCAGTTACTACTAAAAATTAACTTTGAGACTAGTTG ATAATTAATACAGGTTTACAGTTCATGCCTGTGGTTTTGTGTTTGTTTCGTGTTTTTTAG TGCAAAAGGTTTCAATTTATAGTTGTGAACATTGCTTGTGTGTTTTTCTAAGTAGATTCA CAAGACAATTAAAAATTCACTTTT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 1013-2441, - strand, RNAz p=0.978718 | |
| 1019-1122, - strand, RNAz p=0.696508 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1013-2441, - strand, RNAz p=0.978718 | |
| 1019-1122, - strand, RNAz p=0.696508 |
| Aligned organism(s): 47 entry(ies) | More info |
| Aligned organism(s): 47 entry(ies) | Help | Less info |
| 269-618, gnl|bosTau2|chr14 (18726348-18726692) | |
| 269-618, gnl|Hg17|chr5 (157347799-157347464) | |
| 269-618, gnl|Mm7|chr3 (17843452-17843781) | |
| 705-820, gnl|bosTau2|chr21 (48330477-48330592) | |
| 705-820, gnl|canFam2|chr8 (74284575-74284721) | |
| 705-820, gnl|danRer3|chr13 (12471501-12471635) | |
| 705-820, gnl|dasNov1|scaffold_27073 (16731-16877) | |
| 705-820, gnl|echTel1|scaffold_306482 (37679-37532) | |
| 705-820, gnl|fr1|chrUn (221701325-221701471) | |
| 705-820, gnl|galGal2|chr5 (47076859-47077018) | |
| 705-820, gnl|hg17|chr14 (103003142-103003288) | |
| 705-820, gnl|Hg17|chr14 (103003166-103003281) | |
| 705-820, gnl|loxAfr1|scaffold_2063 (36237-36097) | |
| 705-820, gnl|mm7|chr12 (109147446-109147588) | |
| 705-820, gnl|Mm7|chr12 (109147466-109147581) | |
| 705-820, gnl|monDom2|scaffold_6 (87831585-87831730) | |
| 705-820, gnl|oryCun1|scaffold_175584 (3574-3720) | |
| 705-820, gnl|panTro1|chr15 (103626620-103626766) | |
| 705-820, gnl|rheMac2|chr7 (166805824-166805970) | |
| 705-820, gnl|rn3|chr6 (136412029-136412171) | |
| 705-820, gnl|tetNig1|chr10 (12480718-12480834) | |
| 705-820, gnl|xenTro1|scaffold_127 (1471151-1471290) | |
| 974-1197, gnl|bosTau2|chr21 (48335546-48335768) | |
| 974-1197, gnl|canFam2|chr8 (74289868-74290114) | |
| 974-1197, gnl|danRer3|chr16 (16336606-16336846) | |
| 974-1197, gnl|dasNov1|scaffold_10001 (15347-15560) | |
| 974-1197, gnl|echTel1|scaffold_217267 (3695-3909) | |
| 974-1197, gnl|fr1|chrUn (221702135-221702369) | |
| 974-1197, gnl|galGal2|chr5 (47079119-47079368) | |
| 974-1197, gnl|hg17|chr14 (103011067-103011313) | |
| 974-1197, gnl|Hg17|chr14 (103011082-103011304) | |
| 974-1197, gnl|loxAfr1|scaffold_2063 (29545-29305) | |
| 974-1197, gnl|mm7|chr12 (109152826-109153075) | |
| 974-1197, gnl|Mm7|chr12 (109152841-109153063) | |
| 974-1197, gnl|monDom2|scaffold_6 (87837902-87838148) | |
| 974-1197, gnl|oryCun1|scaffold_175213 (19127-18880) | |
| 974-1197, gnl|panTro1|chr15 (103634549-103634795) | |
| 974-1197, gnl|rheMac2|chr7 (166813445-166813691) | |
| 974-1197, gnl|rn3|chr6 (136417082-136417331) | |
| 974-1197, gnl|tetNig1|chr10 (12481329-12481562) | |
| 974-1197, gnl|xenTro1|scaffold_127 (1474661-1474915) | |
| 1553-2484, gnl|bosTau2|chr21 (48354151-48355103) | |
| 1553-2484, gnl|Hg17|chr14 (103038970-103039910) | |
| 1553-2484, gnl|Mm7|chr12 (109177041-109177985) | |
| 1575-1900, gnl|bosTau2|chr16 (10974528-10974203) | |
| 1575-1900, gnl|Hg17|chr1 (217223578-217223903) | |
| 1575-1900, gnl|Mm7|chr1 (184424428-184424103) |
| Aligned organism(s): 47 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 269-618, gnl|bosTau2|chr14 (18726348-18726692) | |
| 269-618, gnl|Hg17|chr5 (157347799-157347464) | |
| 269-618, gnl|Mm7|chr3 (17843452-17843781) | |
| 705-820, gnl|bosTau2|chr21 (48330477-48330592) | |
| 705-820, gnl|canFam2|chr8 (74284575-74284721) | |
| 705-820, gnl|danRer3|chr13 (12471501-12471635) | |
| 705-820, gnl|dasNov1|scaffold_27073 (16731-16877) | |
| 705-820, gnl|echTel1|scaffold_306482 (37679-37532) | |
| 705-820, gnl|fr1|chrUn (221701325-221701471) | |
| 705-820, gnl|galGal2|chr5 (47076859-47077018) | |
| 705-820, gnl|hg17|chr14 (103003142-103003288) | |
| 705-820, gnl|Hg17|chr14 (103003166-103003281) | |
| 705-820, gnl|loxAfr1|scaffold_2063 (36237-36097) | |
| 705-820, gnl|mm7|chr12 (109147446-109147588) | |
| 705-820, gnl|Mm7|chr12 (109147466-109147581) | |
| 705-820, gnl|monDom2|scaffold_6 (87831585-87831730) | |
| 705-820, gnl|oryCun1|scaffold_175584 (3574-3720) | |
| 705-820, gnl|panTro1|chr15 (103626620-103626766) | |
| 705-820, gnl|rheMac2|chr7 (166805824-166805970) | |
| 705-820, gnl|rn3|chr6 (136412029-136412171) | |
| 705-820, gnl|tetNig1|chr10 (12480718-12480834) | |
| 705-820, gnl|xenTro1|scaffold_127 (1471151-1471290) | |
| 974-1197, gnl|bosTau2|chr21 (48335546-48335768) | |
| 974-1197, gnl|canFam2|chr8 (74289868-74290114) | |
| 974-1197, gnl|danRer3|chr16 (16336606-16336846) | |
| 974-1197, gnl|dasNov1|scaffold_10001 (15347-15560) | |
| 974-1197, gnl|echTel1|scaffold_217267 (3695-3909) | |
| 974-1197, gnl|fr1|chrUn (221702135-221702369) | |
| 974-1197, gnl|galGal2|chr5 (47079119-47079368) | |
| 974-1197, gnl|hg17|chr14 (103011067-103011313) | |
| 974-1197, gnl|Hg17|chr14 (103011082-103011304) | |
| 974-1197, gnl|loxAfr1|scaffold_2063 (29545-29305) | |
| 974-1197, gnl|mm7|chr12 (109152826-109153075) | |
| 974-1197, gnl|Mm7|chr12 (109152841-109153063) | |
| 974-1197, gnl|monDom2|scaffold_6 (87837902-87838148) | |
| 974-1197, gnl|oryCun1|scaffold_175213 (19127-18880) | |
| 974-1197, gnl|panTro1|chr15 (103634549-103634795) | |
| 974-1197, gnl|rheMac2|chr7 (166813445-166813691) | |
| 974-1197, gnl|rn3|chr6 (136417082-136417331) | |
| 974-1197, gnl|tetNig1|chr10 (12481329-12481562) | |
| 974-1197, gnl|xenTro1|scaffold_127 (1474661-1474915) | |
| 1553-2484, gnl|bosTau2|chr21 (48354151-48355103) | |
| 1553-2484, gnl|Hg17|chr14 (103038970-103039910) | |
| 1553-2484, gnl|Mm7|chr12 (109177041-109177985) | |
| 1575-1900, gnl|bosTau2|chr16 (10974528-10974203) | |
| 1575-1900, gnl|Hg17|chr1 (217223578-217223903) | |
| 1575-1900, gnl|Mm7|chr1 (184424428-184424103) |
| Expressed library(ies): 34 entry(ies) | More info |
| Expressed library(ies): 34 entry(ies) | Help | Less info |
| cmu (0.372787) | |
| csp (0.322373) | |
| cte (0.29274) | |
| che (0.272628) | |
| fce (0.271592) | |
| cbe (0.239234) | |
| mgp (0.230681) | |
| ece (0.229305) | |
| spc (0.226732) | |
| tes (0.207814) | |
| fcc (0.197785) | |
| ldo (0.194005) | |
| sto (0.179824) | |
| ill (0.175593) | |
| eye (0.170503) | |
| cki (0.165235) | |
| tbr (0.154178) | |
| isp (0.150376) | |
| lin (0.145603) | |
| spl (0.143184) | |
| lnt (0.142308) | |
| cst (0.140036) | |
| hlv (0.139256) | |
| ssp (0.13552) | |
| ste (0.135208) | |
| pla (0.133672) | |
| lyg (0.133103) | |
| ute (0.132784) | |
| eep (0.122564) | |
| clu (0.119646) | |
| pgl (0.118483) | |
| ebs (0.118301) | |
| med (0.116252) | |
| cty (0.10408) |
| Expressed library(ies): 34 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cmu (0.372787) | |
| csp (0.322373) | |
| cte (0.29274) | |
| che (0.272628) | |
| fce (0.271592) | |
| cbe (0.239234) | |
| mgp (0.230681) | |
| ece (0.229305) | |
| spc (0.226732) | |
| tes (0.207814) | |
| fcc (0.197785) | |
| ldo (0.194005) | |
| sto (0.179824) | |
| ill (0.175593) | |
| eye (0.170503) | |
| cki (0.165235) | |
| tbr (0.154178) | |
| isp (0.150376) | |
| lin (0.145603) | |
| spl (0.143184) | |
| lnt (0.142308) | |
| cst (0.140036) | |
| hlv (0.139256) | |
| ssp (0.13552) | |
| ste (0.135208) | |
| pla (0.133672) | |
| lyg (0.133103) | |
| ute (0.132784) | |
| eep (0.122564) | |
| clu (0.119646) | |
| pgl (0.118483) | |
| ebs (0.118301) | |
| med (0.116252) | |
| cty (0.10408) |