Non-Coding RNA Search

Ss1.1-Mixn-0010g22.5

Sequence:


               
               GAGGCGGGTTCGCTGCGGCCTCTCCAAGGCCAAAGCAAGAAGACCTTGCTGCGCACGCGC
AGTAGACAGCCGATGGAGCCACCGATGGAGCCGTCCGGAGGGGAGCAAGAGCCCGGAGCC
GTCAGGTACCGAGCACCGGAGGGGCCGAGAGAAGGAAGAAGGACCTGGGGGAGGGGAGCT
GAACCAAGGCCGGGTCTGGGGATCACCTTTAGGAGCCAGGGCTCAGAAGCATAACGGAGG
CGGATTCACAGGTAACAGCGGCCCGGGGACGCCGCCGCCAACGCCCCTTTACCCGCAGGC
TCCTGGACCTGCCCTGGGAAGATGTGCTGCTCCCACACGTCCTCAGCCGGGTGCCGCTGC
GCCAGCTGCTCCGACTACAGCGCGTCAGCCGGGCTTTCCGGGCGCTAGTGCAGCTGCACC
TGGCCGGGCTGCGCCGTTTCGACGCCGCTCAGGTGAGGAGCCAGAGCCCCGCCCCTTCTG
GGTACCGCCTCCGCCCCGCCTCCAGCCCAGCCCCCAACCCCCTGCCCCTACCCCTGAACC
CCCGCCCCCAGCCCCGCTGCCTTCCGTTCTGGACCCCCCTTGGGCCTCCGGGAATGCCCA
GGAAGAGATCCACCTAGCGAGGAGGGCAAGTACTGGGAATCAGCTTAGAGGGCGCGTAGG
GTCTCTATTGGGATGGTAGGTGGCAAGCCCGAGGGAGACCTGCTGCCGTGGAAGAACTCA
GGGGCGGATAGGCTGCGCCAGCCCACGAGACCATCTGAAAGTCGAGATGCCTCCCCGCCC
GCAGGTGGGTCCGCAGATCCCCCGGGCCGCATTGGCCTGGCTGCTGCGGGATGCCGAGGG
GCTGCAGGAGCTTGCGCTGGCGCCGTGTCACGATGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGGCGGGTTCGCTGCGGCCTCTCCAAGGCCAAAGCAAGAAGACCTTGCTGCGCACGCGC
AGTAGACAGCCGATGGAGCCACCGATGGAGCCGTCCGGAGGGGAGCAAGAGCCCGGAGCC
GTCAGGTACCGAGCACCGGAGGGGCCGAGAGAAGGAAGAAGGACCTGGGGGAGGGGAGCT
GAACCAAGGCCGGGTCTGGGGATCACCTTTAGGAGCCAGGGCTCAGAAGCATAACGGAGG
CGGATTCACAGGTAACAGCGGCCCGGGGACGCCGCCGCCAACGCCCCTTTACCCGCAGGC
TCCTGGACCTGCCCTGGGAAGATGTGCTGCTCCCACACGTCCTCAGCCGGGTGCCGCTGC
GCCAGCTGCTCCGACTACAGCGCGTCAGCCGGGCTTTCCGGGCGCTAGTGCAGCTGCACC
TGGCCGGGCTGCGCCGTTTCGACGCCGCTCAGGTGAGGAGCCAGAGCCCCGCCCCTTCTG
GGTACCGCCTCCGCCCCGCCTCCAGCCCAGCCCCCAACCCCCTGCCCCTACCCCTGAACC
CCCGCCCCCAGCCCCGCTGCCTTCCGTTCTGGACCCCCCTTGGGCCTCCGGGAATGCCCA
GGAAGAGATCCACCTAGCGAGGAGGGCAAGTACTGGGAATCAGCTTAGAGGGCGCGTAGG
GTCTCTATTGGGATGGTAGGTGGCAAGCCCGAGGGAGACCTGCTGCCGTGGAAGAACTCA
GGGGCGGATAGGCTGCGCCAGCCCACGAGACCATCTGAAAGTCGAGATGCCTCCCCGCCC
GCAGGTGGGTCCGCAGATCCCCCGGGCCGCATTGGCCTGGCTGCTGCGGGATGCCGAGGG
GCTGCAGGAGCTTGCGCTGGCGCCGTGTCACGATGG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               Q5JWB0_HUMAN

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               Q5JWB0_HUMAN

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               321-440, - strand, RNAz p=0.657348
               

               
               539-644, - strand, RNAz p=0.824417

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               321-440, - strand, RNAz p=0.657348
               

               
               539-644, - strand, RNAz p=0.824417

Predicted microRNA(s): 2 entry(ies)

More info

Predicted microRNA(s): 2 entry(ies)

Help | Less info


               
               589-712, + strand, RNAmicro p=0.982221
               

               
               327-440, - strand, RNAmicro p=0.906184

Predicted microRNA(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               589-712, + strand, RNAmicro p=0.982221
               

               
               327-440, - strand, RNAmicro p=0.906184

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               2-873, gnl|bosTau2|chr26 (14105334-14104424)
               

               
               2-873, gnl|Hg17|chr10 (104170806-104171622)
               

               
               2-873, gnl|Mm7|chr19 (46225038-46225810)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-873, gnl|bosTau2|chr26 (14105334-14104424)
               

               
               2-873, gnl|Hg17|chr10 (104170806-104171622)
               

               
               2-873, gnl|Mm7|chr19 (46225038-46225810)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               pla (0.133672)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.133672)

	321-440, - strand, RNAz p=0.657348
	539-644, - strand, RNAz p=0.824417

	589-712, + strand, RNAmicro p=0.982221
	327-440, - strand, RNAmicro p=0.906184

	2-873, gnl\|bosTau2\|chr26 (14105334-14104424)
	2-873, gnl\|Hg17\|chr10 (104170806-104171622)
	2-873, gnl\|Mm7\|chr19 (46225038-46225810)