Non-Coding RNA Search

Ss1.1-Mixn-0010h14.5

Sequence:


               
               GAGCAGCGAGCCAGACCTGGAATCCCAGTGTCCAGGCTCAGGAACTACTCCCCCAAACCA
GCCCCCTGCAGAACCCCCTCAGCCCAGCCCCGACAGCACAGCCGCCCAGAAAGTGGCCAC
GAGTCCTAAGAGTGCCCTCAAGTCCCCATCCTCCAAGCGCCGGACATCTCAGAACTTGAA
ACTCAGAGTTACCTTTGAGGAGCCCGTGGTGCAGATGGAGCAAAGTGGCCTTGAACAGAA
CGGCGAAAAGGACAGAGATAAGGGCAGGCCGCTCCCACGGACCTCCGCGGGGAACGAATC
AGGGGATCAACTGAAAAGGCCTTTTGGAACCTTCCGATCCATCATGGAGACGTTGAGTGG
CAACCAAAACAATAATAATAACTATCAGGCATCCAACCAGCTAAAGACGTCCACGCTGCC
CTTAACCTCACTTGGACGGAAGACCACAGACAGTAAAGGAAACCCCGGGAGCTCTGCTGG
CAAAGGGAAGAATAAGGCGGCATAATGACATCAATAGAAAAATGAAGAAATCCTGCAGCA
TAAGGCACGTGGCTGAGCCAGAGTCGAAAGAACTCTTCTTATAAATCATTTTTTTTATTA
TCTCTCGTTGCTGCCCTTTGGACACCATTGGAAATTTTGGGACTGTCCTCTGTGGAAATA
GAACCATGAGAACAATGCCTCACCAGCAGAAGAACAGACTATCAGGATGCCTTAAATTTA
TAGCACTAGAGTATAAAAGACACACTTTTGGGTGATATTTGTGTATATAACTTGTTTTTG
AAGAGATGCTGTTTAAAAGCATGACTGGGCAAATATATGTTTTTTTAAGATTGGATTTAT
TCAACCTCCCCCCCCCAGGGCATTCACCAAGCCACTGACACCACTTTGTATTTCATCAAT
TGCATGAGTGTTTGCGGATGTTGGTTGAACTTCCCTTTCCCCGTAACATGGGCAGTTTTG
GCTCAGCTTCTCCTTGAGACCAGGTCAGTGGTATTGTTTTCTGTTAAGAGTGTTTTTTCT
GTCATTTCTACTTTTGTATAAAGGAAATAAAACAATGTTAACAGCCAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGCAGCGAGCCAGACCTGGAATCCCAGTGTCCAGGCTCAGGAACTACTCCCCCAAACCA
GCCCCCTGCAGAACCCCCTCAGCCCAGCCCCGACAGCACAGCCGCCCAGAAAGTGGCCAC
GAGTCCTAAGAGTGCCCTCAAGTCCCCATCCTCCAAGCGCCGGACATCTCAGAACTTGAA
ACTCAGAGTTACCTTTGAGGAGCCCGTGGTGCAGATGGAGCAAAGTGGCCTTGAACAGAA
CGGCGAAAAGGACAGAGATAAGGGCAGGCCGCTCCCACGGACCTCCGCGGGGAACGAATC
AGGGGATCAACTGAAAAGGCCTTTTGGAACCTTCCGATCCATCATGGAGACGTTGAGTGG
CAACCAAAACAATAATAATAACTATCAGGCATCCAACCAGCTAAAGACGTCCACGCTGCC
CTTAACCTCACTTGGACGGAAGACCACAGACAGTAAAGGAAACCCCGGGAGCTCTGCTGG
CAAAGGGAAGAATAAGGCGGCATAATGACATCAATAGAAAAATGAAGAAATCCTGCAGCA
TAAGGCACGTGGCTGAGCCAGAGTCGAAAGAACTCTTCTTATAAATCATTTTTTTTATTA
TCTCTCGTTGCTGCCCTTTGGACACCATTGGAAATTTTGGGACTGTCCTCTGTGGAAATA
GAACCATGAGAACAATGCCTCACCAGCAGAAGAACAGACTATCAGGATGCCTTAAATTTA
TAGCACTAGAGTATAAAAGACACACTTTTGGGTGATATTTGTGTATATAACTTGTTTTTG
AAGAGATGCTGTTTAAAAGCATGACTGGGCAAATATATGTTTTTTTAAGATTGGATTTAT
TCAACCTCCCCCCCCCAGGGCATTCACCAAGCCACTGACACCACTTTGTATTTCATCAAT
TGCATGAGTGTTTGCGGATGTTGGTTGAACTTCCCTTTCCCCGTAACATGGGCAGTTTTG
GCTCAGCTTCTCCTTGAGACCAGGTCAGTGGTATTGTTTTCTGTTAAGAGTGTTTTTTCT
GTCATTTCTACTTTTGTATAAAGGAAATAAAACAATGTTAACAGCCAAAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-500, gnl|bosTau2|chr25 (17152072-17152570)
               

               
               2-500, gnl|Hg17|chr5 (121814701-121815196)
               

               
               2-500, gnl|Mm7|chr18 (53287758-53288247)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-500, gnl|bosTau2|chr25 (17152072-17152570)
               

               
               2-500, gnl|Hg17|chr5 (121814701-121815196)
               

               
               2-500, gnl|Mm7|chr18 (53287758-53288247)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               cmu (0.186393)
               

               
               ova (0.129132)
               

               
               tra (0.123092)
               

               
               cty (0.10408)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cmu (0.186393)
               

               
               ova (0.129132)
               

               
               tra (0.123092)
               

               
               cty (0.10408)

	2-500, gnl\|bosTau2\|chr25 (17152072-17152570)
	2-500, gnl\|Hg17\|chr5 (121814701-121815196)
	2-500, gnl\|Mm7\|chr18 (53287758-53288247)