Non-Coding RNA Search

Ss1.1-Mixn-0010j15.5

Sequence:


               
               GGCTTTTTACTAATCGGATTAGAAATTCTAGAAACTAAATTCTGTGCAGTATTGATATAC
AGTAAAGTACAATCATGATATGTCCCCAAATCCTTTGATTCTAAGTGGCCTATCATTTAT
AAACAAGTAAAGTGGAAACAAGGATGGCTTCACATGCTCATTTCTTCTTTCGGGGGGCGT
ATTAAGATTATTAGTAATCTGTTTCTCAGTTCCTTCATCTTTTGCCCGAGATGAAGGGTT
CCATGCAGAAGGCCCTTATCCTTTTTGATGGAGTTTCAAACACCTTGGACTCAAAAGAGT
ATTTCAGATCTCTGTATTAACTGAACATCATACATATATAAACTGTTCACTGTTCACCAG
ATATTTTTGTCTTTCTATTATCTTACTCACTTATTCAAGCTTGTCTGTGATTAATGGAGT
TGGTGTCAGATGCTGGAATTTATTCTGACCAATGAACACAGCTGACTCAGGGGACTGCCA
TCTCCTGCCAAGTAATAGAACAAAACCCAATATGCGTAAAACACATAGGAGACTCCAGGC
TTTAGCTGAAGGAAGCAACTACCTGTGTAATAATAAAGCAGCAGAAACTACTGCTCGTGT
GGCTGCATAGGCTGTATATGATAATCTAATCTCTAATGTAGCTTACTGGTTTGCCTTTTA
TAAAACCAAGATTGGAAATTTTCCTTTGTAAAGAAAATAGCTCATATGACATAACAGCTT
GATTAATGTTTTGAACAATGCCAAGACATTGTTTAATTAAAATAAATTATTTTTGCTTGA
AATCGAAGTGGATGTGAAATATTGTACTTGCCTAAATATTCCAAGGTGTCACATACTAAT
TAGTTAATTTGATTCATCTAACAGACATTTGTCTTGTTAAACCAACTTCTAAATGGAGAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCTTTTTACTAATCGGATTAGAAATTCTAGAAACTAAATTCTGTGCAGTATTGATATAC
AGTAAAGTACAATCATGATATGTCCCCAAATCCTTTGATTCTAAGTGGCCTATCATTTAT
AAACAAGTAAAGTGGAAACAAGGATGGCTTCACATGCTCATTTCTTCTTTCGGGGGGCGT
ATTAAGATTATTAGTAATCTGTTTCTCAGTTCCTTCATCTTTTGCCCGAGATGAAGGGTT
CCATGCAGAAGGCCCTTATCCTTTTTGATGGAGTTTCAAACACCTTGGACTCAAAAGAGT
ATTTCAGATCTCTGTATTAACTGAACATCATACATATATAAACTGTTCACTGTTCACCAG
ATATTTTTGTCTTTCTATTATCTTACTCACTTATTCAAGCTTGTCTGTGATTAATGGAGT
TGGTGTCAGATGCTGGAATTTATTCTGACCAATGAACACAGCTGACTCAGGGGACTGCCA
TCTCCTGCCAAGTAATAGAACAAAACCCAATATGCGTAAAACACATAGGAGACTCCAGGC
TTTAGCTGAAGGAAGCAACTACCTGTGTAATAATAAAGCAGCAGAAACTACTGCTCGTGT
GGCTGCATAGGCTGTATATGATAATCTAATCTCTAATGTAGCTTACTGGTTTGCCTTTTA
TAAAACCAAGATTGGAAATTTTCCTTTGTAAAGAAAATAGCTCATATGACATAACAGCTT
GATTAATGTTTTGAACAATGCCAAGACATTGTTTAATTAAAATAAATTATTTTTGCTTGA
AATCGAAGTGGATGTGAAATATTGTACTTGCCTAAATATTCCAAGGTGTCACATACTAAT
TAGTTAATTTGATTCATCTAACAGACATTTGTCTTGTTAAACCAACTTCTAAATGGAGAC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               173-283, + strand, RNAz p=0.539734

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               173-283, + strand, RNAz p=0.539734

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               140-845, gnl|bosTau2|chr22 (18835-19531)
               

               
               140-845, gnl|Hg17|chr3 (28339476-28338790)
               

               
               140-845, gnl|Mm7|chr9 (117744940-117745580)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               140-845, gnl|bosTau2|chr22 (18835-19531)
               

               
               140-845, gnl|Hg17|chr3 (28339476-28338790)
               

               
               140-845, gnl|Mm7|chr9 (117744940-117745580)

Expressed library(ies): 14 entry(ies)

More info

Expressed library(ies): 14 entry(ies)

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               rec (0.346141)
               

               
               bfe (0.299715)
               

               
               ova (0.258264)
               

               
               thg (0.253582)
               

               
               spc (0.226732)
               

               
               cty (0.20816)
               

               
               hea (0.204499)
               

               
               sag (0.182715)
               

               
               mgm (0.180343)
               

               
               fhi (0.169578)
               

               
               fco (0.157208)
               

               
               eli (0.151814)
               

               
               isp (0.150376)
               

               
               liv (0.146284)

Expressed library(ies): 14 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               rec (0.346141)
               

               
               bfe (0.299715)
               

               
               ova (0.258264)
               

               
               thg (0.253582)
               

               
               spc (0.226732)
               

               
               cty (0.20816)
               

               
               hea (0.204499)
               

               
               sag (0.182715)
               

               
               mgm (0.180343)
               

               
               fhi (0.169578)
               

               
               fco (0.157208)
               

               
               eli (0.151814)
               

               
               isp (0.150376)
               

               
               liv (0.146284)

	140-845, gnl\|bosTau2\|chr22 (18835-19531)
	140-845, gnl\|Hg17\|chr3 (28339476-28338790)
	140-845, gnl\|Mm7\|chr9 (117744940-117745580)

	rec (0.346141)
	bfe (0.299715)
	ova (0.258264)
	thg (0.253582)
	spc (0.226732)
	cty (0.20816)
	hea (0.204499)
	sag (0.182715)
	mgm (0.180343)
	fhi (0.169578)
	fco (0.157208)
	eli (0.151814)
	isp (0.150376)
	liv (0.146284)