Ss1.1-Mixn-0010k06.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCAGGAGCCGGCCCGGAGCCTCCAGGACCAGGAAAACTGTAACGCGAGCCCCGACTCCGG GGCAGGGCCGGACGGGGGAGGCGATGGCTTCCGGGCGCTGGCCTGCAGCTTGGAGGAGAA ACTGAGCCTGTGTTTCCGCCCCTTGGGTCCTGGCGCCGAGCCCCCGAGGGCGGCGGTGCG GCCCATCACCGAGTGCAGCCTCCTGCAGGGGGACGAGATTTGGAATGCCCTGACAGATAA TTACGGAAATGTCATGCCTGTTGACTGGAAGTCATCCCACACCAGGACCTTGCATTTGCT TACTCTGAACCTCTCAGAAAAAGGGGTGAGTGATGGCCTGCTCTTTGATACCTCAGATGA TGAGGAGCTGAGAGAGCAGCTGGATATGCATTCGATCATCGTCTCCTGCGTCAATGACGA GCCCCTCTTCACTGCAGACCAGGTGATTGAAGAAATCGAAGAAATGATGCAGGAGTCACC AGACCCAGAAGATGATGAAACGCCCACCCAGTCAGATCGGCTGTCAATGCTTTCCCAGGA AATTCAGACTCTTAAGAGGTCTAGTACAAGCAGTTATGAAGAGAGAGTGAAAAGGCTGTC AGTATCTGAATTAAATGAACTGCTGGAAGAAGTTGAGACGGCCATCAAGGAGTACTCGGA AGAGCTGGTGCAACAGCTGGCCCTGAGAGATGAACTGGAGTTTGAAAAGGAAGTGAAGAA CAGCTTTATTTCTGTTCTCATTGAAGTGCAGAACAAACAGAAAGAGCACAAAGAAACAGC CAAAAAGAAAAAGAAACTCAAGAATGGCAGCTCTCAGAATGGCAAGAATGAGAGAAGTCA CATGCCTGGCACATACTTGACAACAGTTATTCCTTATGAGAAAAAGAACGGACCACCATC CGTTGAAGATCTTCAAATACTAACAAAAATTCTTCGTGCCATGAAAGAGGATAGTGAAAA AGTTCCGAGCTTGTTAACTGATTATATACTGAAAGTTCTATGTCCTACATAGCACAGCAT CCCTTCAGGAACAACTTTATCTTTCGTGGACTACAAGCTATATTTCCTATAGCATTATTC TGAAAGCTGGCTACCATTACCTTCCTGCTATTGGAAACTCAGGACACTTGAACTTGGGTT TGTGATTCAGTATTACTAGATCATGTCCTAATTCTTTATATTATCAACGAAGAGAAATAT GGCACTATTTTGAATTCTAGAGATGGTTTTTCGTTAAATACTAACAATTGCGAACTCTTC TCCAGCTTTATAGAGGGGGAGTGATGTTAATTGTCCATGTGCAGTTAGAGTTTACATCAG CTGACAGTACGCCGATCTGAGTTTTTATGGCTTTCTAGATCTAAACTGCACTCACTTGAG AACTAGATTAAAGCACTGAGAGATTTATACTATAGCTATTCTTTGGTGATGGCAAGAACC AACTCTGGTTTTTTTTATAAGAGAATTGTCAGTATAAATATTACCTACCAGTATTGTCCA GAGAGACTGAAACTTGGGTTGTTCTTGGAAGAAGGGAAACCAGAATATGCATTATTTTAA TACTTAGTAACTAACACTTGGAGATGACTGATTTTAGAGGCTGCTGTGTGTTTCACCATT GTTCAAATTTTAACCATTAGGATGCCATTCAGAATCTTGTTTAATTTTAGAGGGTTAAAT GTTTCATTTCACCTGTCTGCGAAGAAGTGTCCTTTACAAGGATAAGGTGCTTAAGAAACT GTATGCTGTCGCAGCCCATTTCCTTTTACTGTGTTGTATTTTATTCATGCCTGTGTGTTC TCCTAAAGTGCTAATTCTAGAAACAGCCATTCATGGATACATCACTAGTCATGAAACACT TTTGCCAGTTCCAATCAAGTCAACCCCATTTAATAAATGTTGGGGAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCAGGAGCCGGCCCGGAGCCTCCAGGACCAGGAAAACTGTAACGCGAGCCCCGACTCCGG GGCAGGGCCGGACGGGGGAGGCGATGGCTTCCGGGCGCTGGCCTGCAGCTTGGAGGAGAA ACTGAGCCTGTGTTTCCGCCCCTTGGGTCCTGGCGCCGAGCCCCCGAGGGCGGCGGTGCG GCCCATCACCGAGTGCAGCCTCCTGCAGGGGGACGAGATTTGGAATGCCCTGACAGATAA TTACGGAAATGTCATGCCTGTTGACTGGAAGTCATCCCACACCAGGACCTTGCATTTGCT TACTCTGAACCTCTCAGAAAAAGGGGTGAGTGATGGCCTGCTCTTTGATACCTCAGATGA TGAGGAGCTGAGAGAGCAGCTGGATATGCATTCGATCATCGTCTCCTGCGTCAATGACGA GCCCCTCTTCACTGCAGACCAGGTGATTGAAGAAATCGAAGAAATGATGCAGGAGTCACC AGACCCAGAAGATGATGAAACGCCCACCCAGTCAGATCGGCTGTCAATGCTTTCCCAGGA AATTCAGACTCTTAAGAGGTCTAGTACAAGCAGTTATGAAGAGAGAGTGAAAAGGCTGTC AGTATCTGAATTAAATGAACTGCTGGAAGAAGTTGAGACGGCCATCAAGGAGTACTCGGA AGAGCTGGTGCAACAGCTGGCCCTGAGAGATGAACTGGAGTTTGAAAAGGAAGTGAAGAA CAGCTTTATTTCTGTTCTCATTGAAGTGCAGAACAAACAGAAAGAGCACAAAGAAACAGC CAAAAAGAAAAAGAAACTCAAGAATGGCAGCTCTCAGAATGGCAAGAATGAGAGAAGTCA CATGCCTGGCACATACTTGACAACAGTTATTCCTTATGAGAAAAAGAACGGACCACCATC CGTTGAAGATCTTCAAATACTAACAAAAATTCTTCGTGCCATGAAAGAGGATAGTGAAAA AGTTCCGAGCTTGTTAACTGATTATATACTGAAAGTTCTATGTCCTACATAGCACAGCAT CCCTTCAGGAACAACTTTATCTTTCGTGGACTACAAGCTATATTTCCTATAGCATTATTC TGAAAGCTGGCTACCATTACCTTCCTGCTATTGGAAACTCAGGACACTTGAACTTGGGTT TGTGATTCAGTATTACTAGATCATGTCCTAATTCTTTATATTATCAACGAAGAGAAATAT GGCACTATTTTGAATTCTAGAGATGGTTTTTCGTTAAATACTAACAATTGCGAACTCTTC TCCAGCTTTATAGAGGGGGAGTGATGTTAATTGTCCATGTGCAGTTAGAGTTTACATCAG CTGACAGTACGCCGATCTGAGTTTTTATGGCTTTCTAGATCTAAACTGCACTCACTTGAG AACTAGATTAAAGCACTGAGAGATTTATACTATAGCTATTCTTTGGTGATGGCAAGAACC AACTCTGGTTTTTTTTATAAGAGAATTGTCAGTATAAATATTACCTACCAGTATTGTCCA GAGAGACTGAAACTTGGGTTGTTCTTGGAAGAAGGGAAACCAGAATATGCATTATTTTAA TACTTAGTAACTAACACTTGGAGATGACTGATTTTAGAGGCTGCTGTGTGTTTCACCATT GTTCAAATTTTAACCATTAGGATGCCATTCAGAATCTTGTTTAATTTTAGAGGGTTAAAT GTTTCATTTCACCTGTCTGCGAAGAAGTGTCCTTTACAAGGATAAGGTGCTTAAGAAACT GTATGCTGTCGCAGCCCATTTCCTTTTACTGTGTTGTATTTTATTCATGCCTGTGTGTTC TCCTAAAGTGCTAATTCTAGAAACAGCCATTCATGGATACATCACTAGTCATGAAACACT TTTGCCAGTTCCAATCAAGTCAACCCCATTTAATAAATGTTGGGGAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1579-1679, - strand, RNAz p=0.789406 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1579-1679, - strand, RNAz p=0.789406 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of CR594110, - |
| Aligned organism(s): 38 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
| 1-217, gnl|bosTau2|chr11 (15085568-15085352) | |
| 1-217, gnl|Hg17|chr2 (36736898-36736670) | |
| 1-217, gnl|Mm7|chr17 (76714136-76713923) | |
| 327-444, gnl|bosTau2|chr11 (15074267-15074150) | |
| 327-444, gnl|canFam2|chr17 (32177199-32177293) | |
| 327-444, gnl|danRer3|chr20 (54121304-54121210) | |
| 327-444, gnl|dasNov1|scaffold_279 (43536-43442) | |
| 327-444, gnl|echTel1|scaffold_314004 (94284-94378) | |
| 327-444, gnl|fr1|chrUn (103012553-103012640) | |
| 327-444, gnl|galGal2|chr3 (28568970-28569061) | |
| 327-444, gnl|hg17|chr2 (36722139-36722233) | |
| 327-444, gnl|Hg17|chr2 (36722262-36722145) | |
| 327-444, gnl|loxAfr1|scaffold_4608 (6683-6589) | |
| 327-444, gnl|mm7|chr17 (76700814-76700905) | |
| 327-444, gnl|Mm7|chr17 (76700934-76700817) | |
| 327-444, gnl|monDom2|scaffold_1 (135475167-135475074) | |
| 327-444, gnl|oryCun1|scaffold_213168 (87198-87106) | |
| 327-444, gnl|panTro1|chr12 (38178812-38178876) | |
| 327-444, gnl|rheMac2|chr13 (36555471-36555565) | |
| 327-444, gnl|rn3|chr6 (1171251-1171342) | |
| 327-444, gnl|tetNig1|chrUn_random (139557222-139557134) | |
| 327-444, gnl|xenTro1|scaffold_41 (1565376-1565288) | |
| 585-853, gnl|bosTau2|chr11 (15070584-15070316) | |
| 585-853, gnl|Hg17|chr2 (36717659-36717391) | |
| 585-853, gnl|Mm7|chr17 (76696989-76696721) | |
| 994-1908, gnl|bosTau2|chr11 (15041365-15040419) | |
| 994-1908, gnl|canFam2|chr17 (32146268-32147467) | |
| 994-1908, gnl|dasNov1|scaffold_279 (69587-68418) | |
| 994-1908, gnl|hg17|chr2 (36690812-36691951) | |
| 994-1908, gnl|Hg17|chr2 (36691975-36691059) | |
| 994-1908, gnl|loxAfr1|scaffold_35802 (17505-16352) | |
| 994-1908, gnl|mm7|chr17 (76673773-76674814) | |
| 994-1908, gnl|Mm7|chr17 (76674838-76673988) | |
| 994-1908, gnl|monDom2|scaffold_1 (135530123-135528963) | |
| 994-1908, gnl|oryCun1|scaffold_184820 (21749-20657) | |
| 994-1908, gnl|panTro1|chr12 (38146560-38147699) | |
| 994-1908, gnl|rheMac2|chr13 (36524293-36525433) | |
| 994-1908, gnl|rn3|chr6 (1144317-1145355) |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-217, gnl|bosTau2|chr11 (15085568-15085352) | |
| 1-217, gnl|Hg17|chr2 (36736898-36736670) | |
| 1-217, gnl|Mm7|chr17 (76714136-76713923) | |
| 327-444, gnl|bosTau2|chr11 (15074267-15074150) | |
| 327-444, gnl|canFam2|chr17 (32177199-32177293) | |
| 327-444, gnl|danRer3|chr20 (54121304-54121210) | |
| 327-444, gnl|dasNov1|scaffold_279 (43536-43442) | |
| 327-444, gnl|echTel1|scaffold_314004 (94284-94378) | |
| 327-444, gnl|fr1|chrUn (103012553-103012640) | |
| 327-444, gnl|galGal2|chr3 (28568970-28569061) | |
| 327-444, gnl|hg17|chr2 (36722139-36722233) | |
| 327-444, gnl|Hg17|chr2 (36722262-36722145) | |
| 327-444, gnl|loxAfr1|scaffold_4608 (6683-6589) | |
| 327-444, gnl|mm7|chr17 (76700814-76700905) | |
| 327-444, gnl|Mm7|chr17 (76700934-76700817) | |
| 327-444, gnl|monDom2|scaffold_1 (135475167-135475074) | |
| 327-444, gnl|oryCun1|scaffold_213168 (87198-87106) | |
| 327-444, gnl|panTro1|chr12 (38178812-38178876) | |
| 327-444, gnl|rheMac2|chr13 (36555471-36555565) | |
| 327-444, gnl|rn3|chr6 (1171251-1171342) | |
| 327-444, gnl|tetNig1|chrUn_random (139557222-139557134) | |
| 327-444, gnl|xenTro1|scaffold_41 (1565376-1565288) | |
| 585-853, gnl|bosTau2|chr11 (15070584-15070316) | |
| 585-853, gnl|Hg17|chr2 (36717659-36717391) | |
| 585-853, gnl|Mm7|chr17 (76696989-76696721) | |
| 994-1908, gnl|bosTau2|chr11 (15041365-15040419) | |
| 994-1908, gnl|canFam2|chr17 (32146268-32147467) | |
| 994-1908, gnl|dasNov1|scaffold_279 (69587-68418) | |
| 994-1908, gnl|hg17|chr2 (36690812-36691951) | |
| 994-1908, gnl|Hg17|chr2 (36691975-36691059) | |
| 994-1908, gnl|loxAfr1|scaffold_35802 (17505-16352) | |
| 994-1908, gnl|mm7|chr17 (76673773-76674814) | |
| 994-1908, gnl|Mm7|chr17 (76674838-76673988) | |
| 994-1908, gnl|monDom2|scaffold_1 (135530123-135528963) | |
| 994-1908, gnl|oryCun1|scaffold_184820 (21749-20657) | |
| 994-1908, gnl|panTro1|chr12 (38146560-38147699) | |
| 994-1908, gnl|rheMac2|chr13 (36524293-36525433) | |
| 994-1908, gnl|rn3|chr6 (1144317-1145355) |
| Expressed library(ies): 7 entry(ies) | More info |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
| ova (0.258264) | |
| bla (0.248694) | |
| ldo (0.194005) | |
| lin (0.145603) | |
| ste (0.135208) | |
| cty (0.10408) | |
| eje (0.0988338) |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ova (0.258264) | |
| bla (0.248694) | |
| ldo (0.194005) | |
| lin (0.145603) | |
| ste (0.135208) | |
| cty (0.10408) | |
| eje (0.0988338) |