Non-Coding RNA Search

Ss1.1-Mixn-0010k08.5

Sequence:


               
               GCTAACACCAGGAAGTAAATTCAGGGTAAACGTGGCCAGAAAACTGACTTTGAAAAAATG
AAAACGTGCCACTGAGTTGTAAATGACCAGCGAGTATTTAGGGACAACTCCTGTTTTATG
TCTGTATCCTTTCCCACCCTTCAGATGGTACCTGCCCCTCCCAGGTACAGCTGTTTCTCA
GAGAGAGCCACTGTCCTAACGCATTCACTTGGCCTGAGAGCCTGTGTTATCCTAAAGTGC
TCTGGCTGCAGGCGGCCGACCCAGGCGTCTCCTGCCCTGCAGACAGGTCATGCACTGCAT
GCCCCTCTTCTGGCTGGTACCCACTCAAGTTGGGCACAGTACAACCTGTGCAGTATATGT
GATGGGCCTGCGGTTTGGCACATGGTTGGAGGCATTTATGGATTTTTTTTAGCTGTGAGG
AAAAATCATGGTTCCTTAAAAAACATGTGTGGATTATATTCCGAAACTCCGATGTCACAT
AGTGGCAAATAACTATGAATTGTTCATAACAGGTAGGTGCCTTTCTGTGAGCAGGGGTCG
TAATTATTAACCAACTGTGGTAATTATGGTGATTTCTTAAAAATCATGTGATATTAAACA
TTTTCTAACAGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTAACACCAGGAAGTAAATTCAGGGTAAACGTGGCCAGAAAACTGACTTTGAAAAAATG
AAAACGTGCCACTGAGTTGTAAATGACCAGCGAGTATTTAGGGACAACTCCTGTTTTATG
TCTGTATCCTTTCCCACCCTTCAGATGGTACCTGCCCCTCCCAGGTACAGCTGTTTCTCA
GAGAGAGCCACTGTCCTAACGCATTCACTTGGCCTGAGAGCCTGTGTTATCCTAAAGTGC
TCTGGCTGCAGGCGGCCGACCCAGGCGTCTCCTGCCCTGCAGACAGGTCATGCACTGCAT
GCCCCTCTTCTGGCTGGTACCCACTCAAGTTGGGCACAGTACAACCTGTGCAGTATATGT
GATGGGCCTGCGGTTTGGCACATGGTTGGAGGCATTTATGGATTTTTTTTAGCTGTGAGG
AAAAATCATGGTTCCTTAAAAAACATGTGTGGATTATATTCCGAAACTCCGATGTCACAT
AGTGGCAAATAACTATGAATTGTTCATAACAGGTAGGTGCCTTTCTGTGAGCAGGGGTCG
TAATTATTAACCAACTGTGGTAATTATGGTGATTTCTTAAAAATCATGTGATATTAAACA
TTTTCTAACAGC

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               87-185, - strand, RNAz p=0.735551
               

               
               442-593, + strand, RNAz p=0.99957

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               87-185, - strand, RNAz p=0.735551
               

               
               442-593, + strand, RNAz p=0.99957

Homologous human UTR: 1 entry(ies)

More info

Homologous human UTR: 1 entry(ies)

Help | Less info


               
               5' of BC030783, +

Homologous human UTR: 1 entry(ies)

Help | Less info

Human gene identifier and UTR site,
human gene reading direction


               
               5' of BC030783, +

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

Help | Less info


               
               17-612, gnl|bosTau2|chr26 (20986431-20985814)
               

               
               17-612, gnl|Hg17|chr10 (113902591-113901973)

Aligned organism(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               17-612, gnl|bosTau2|chr26 (20986431-20985814)
               

               
               17-612, gnl|Hg17|chr10 (113902591-113901973)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               spc (0.113366)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spc (0.113366)

	87-185, - strand, RNAz p=0.735551
	442-593, + strand, RNAz p=0.99957

	17-612, gnl\|bosTau2\|chr26 (20986431-20985814)
	17-612, gnl\|Hg17\|chr10 (113902591-113901973)