Non-Coding RNA Search

Ss1.1-Mixn-0010m19.5

Sequence:


               
               CCCAAGTTCATTCTGTGAGAGCGTGACCACAGGTCAAGGGAATCTTTTCCATTGGAGTTA
TGTACATAAAAACACATCGACATTTTGACATTTCAGATTGTGTAGATATAATCTGTACTG
CTCTTGGGATCCTTTGTCCTTAAAAGCCAAATTAAGAAAAAGAAGAGAAAGAAAGAAGGA
AACTTTACAGGGTGTGCAGATTTGGAAGTAGTAACTATTTTGTTTTGGAGTCTCTCCCCC
CCCCCTTCTCTTTTCCTGGTTTAGAGGAAGCTCAGTGTGTGGGAGCTTGCAATTTTTGTT
CTTACTGAGGCTTTGCAGCACCCCCACCGCCATCATACATCACTATGGTTGTGGTTTAAT
TTTAAAAGGGGGTGGGTAAGGGGATGTGAAAGAAAAGGATCATTTTGTAAAGTGTATTAA
ACTTTGATACTCAGTTCCAGTCAATACATGTAGACCGGAAAAATCTGTCTGATTTGTGCA
TTTGAGCAGAGTTCTCCATCTGACCCTCAGCTTCTTTCTGTAGATATATACATACATAAA
TATAAGTATGTTCTTATGGCAGAACATCGCTGACCTCTAGATTGAGGTTTTGTAGCTTGT
TGTTTATTTTCTTCTCTTGCAAGTGCTATCCATGTGAGTGTGTGAAGTTTCTCTAATAAG
TAAAACACAGGCCCTTTTCCTTGTTTGTTTTGTGTTAGTTTATTGTAAACAGCCATTTGT
TGTAAATTATTATTGGCATTAAATTATAATTTATGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCAAGTTCATTCTGTGAGAGCGTGACCACAGGTCAAGGGAATCTTTTCCATTGGAGTTA
TGTACATAAAAACACATCGACATTTTGACATTTCAGATTGTGTAGATATAATCTGTACTG
CTCTTGGGATCCTTTGTCCTTAAAAGCCAAATTAAGAAAAAGAAGAGAAAGAAAGAAGGA
AACTTTACAGGGTGTGCAGATTTGGAAGTAGTAACTATTTTGTTTTGGAGTCTCTCCCCC
CCCCCTTCTCTTTTCCTGGTTTAGAGGAAGCTCAGTGTGTGGGAGCTTGCAATTTTTGTT
CTTACTGAGGCTTTGCAGCACCCCCACCGCCATCATACATCACTATGGTTGTGGTTTAAT
TTTAAAAGGGGGTGGGTAAGGGGATGTGAAAGAAAAGGATCATTTTGTAAAGTGTATTAA
ACTTTGATACTCAGTTCCAGTCAATACATGTAGACCGGAAAAATCTGTCTGATTTGTGCA
TTTGAGCAGAGTTCTCCATCTGACCCTCAGCTTCTTTCTGTAGATATATACATACATAAA
TATAAGTATGTTCTTATGGCAGAACATCGCTGACCTCTAGATTGAGGTTTTGTAGCTTGT
TGTTTATTTTCTTCTCTTGCAAGTGCTATCCATGTGAGTGTGTGAAGTTTCTCTAATAAG
TAAAACACAGGCCCTTTTCCTTGTTTGTTTTGTGTTAGTTTATTGTAAACAGCCATTTGT
TGTAAATTATTATTGGCATTAAATTATAATTTATGA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               297-400, - strand, RNAz p=0.637415
               

               
               481-589, - strand, RNAz p=0.889954

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               297-400, - strand, RNAz p=0.637415
               

               
               481-589, - strand, RNAz p=0.889954

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               6-756, gnl|bosTau2|chr21 (5754430-5755199)
               

               
               6-756, gnl|Hg17|chr15 (94683702-94684477)
               

               
               6-756, gnl|Mm7|chr7 (66208506-66207688)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               6-756, gnl|bosTau2|chr21 (5754430-5755199)
               

               
               6-756, gnl|Hg17|chr15 (94683702-94684477)
               

               
               6-756, gnl|Mm7|chr7 (66208506-66207688)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               ova (0.645661)
               

               
               eye (0.170503)
               

               
               kid (0.129735)
               

               
               sug (0.127291)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ova (0.645661)
               

               
               eye (0.170503)
               

               
               kid (0.129735)
               

               
               sug (0.127291)

	297-400, - strand, RNAz p=0.637415
	481-589, - strand, RNAz p=0.889954

	6-756, gnl\|bosTau2\|chr21 (5754430-5755199)
	6-756, gnl\|Hg17\|chr15 (94683702-94684477)
	6-756, gnl\|Mm7\|chr7 (66208506-66207688)