Non-Coding RNA Search

Ss1.1-Mixn-0010n03.5

Sequence:


               
               TCAAATCACTCTTTGTGCACCCTTTCCTGGCTGAGCGCATCATCTCCATGCTGAACTACT
TTCTACAGCATCTGGTTGGCCCCAAAATGGGGGCCTTAAAAGTCAAGGATTTCAGTGAAT
TTGACTTCAAGCCCCAGCAGCTCGTTTCAGATATCTGCACCATCTACCTAAATCTCGGGG
ATGAGGAGAACTTCTGTGCCACCGTGCCCAAGGATGGACGCTCCTATTCCCCAACTCTCT
TTGCACAGACAGTCCGAGTCCTGAAGAAAATAAATAAGCCTGGAAATATGATTGTGGCTT
TCAGCAACTTAGCAGAGAGAATCAAGTCTCTGGCAGACCTCCAGCAACAGGAAGAGGAGA
CCTATGCAGATGCCTGTGATGAGTTCCTGGATCCCATCATGAGCACACTGATGTCTGACC
CTGTGGTGCTGCCATCTTCCAGAGTCACTGTGGATAGATCCACCATTGCCAGACATTTGC
TCAGTGACCAAACAGATCCCTTTAACCGTAGTCCCCTCACCATGGACCAGATCCGGCCAA
ACACAGAACTAAAAGAAAAAATCCAACGGTGGCTCGCAGAGAGGAAGCAACAACAAAAGG
AGCAACTTGAATAAATACTGTGACTTAAACAAACCAGAAACCAACCCCAGATAAACAAAT
GTTTGTGGTTTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCAAATCACTCTTTGTGCACCCTTTCCTGGCTGAGCGCATCATCTCCATGCTGAACTACT
TTCTACAGCATCTGGTTGGCCCCAAAATGGGGGCCTTAAAAGTCAAGGATTTCAGTGAAT
TTGACTTCAAGCCCCAGCAGCTCGTTTCAGATATCTGCACCATCTACCTAAATCTCGGGG
ATGAGGAGAACTTCTGTGCCACCGTGCCCAAGGATGGACGCTCCTATTCCCCAACTCTCT
TTGCACAGACAGTCCGAGTCCTGAAGAAAATAAATAAGCCTGGAAATATGATTGTGGCTT
TCAGCAACTTAGCAGAGAGAATCAAGTCTCTGGCAGACCTCCAGCAACAGGAAGAGGAGA
CCTATGCAGATGCCTGTGATGAGTTCCTGGATCCCATCATGAGCACACTGATGTCTGACC
CTGTGGTGCTGCCATCTTCCAGAGTCACTGTGGATAGATCCACCATTGCCAGACATTTGC
TCAGTGACCAAACAGATCCCTTTAACCGTAGTCCCCTCACCATGGACCAGATCCGGCCAA
ACACAGAACTAAAAGAAAAAATCCAACGGTGGCTCGCAGAGAGGAAGCAACAACAAAAGG
AGCAACTTGAATAAATACTGTGACTTAAACAAACCAGAAACCAACCCCAGATAAACAAAT
GTTTGTGGTTTC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q8BYZ2_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q8BYZ2_MOUSE

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               62-179, - strand, RNAz p=0.688726

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               62-179, - strand, RNAz p=0.688726

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               1-179, gnl|bosTau2|chr15 (15135351-15135173)
               

               
               1-179, gnl|canFam2|chr5 (18351485-18351290)
               

               
               1-179, gnl|danRer3|chr16 (16185831-16185635)
               

               
               1-179, gnl|echTel1|scaffold_38924 (1293-1488)
               

               
               1-179, gnl|fr1|chrUn (124399404-124399601)
               

               
               1-179, gnl|hg17|chr11 (117765640-117765835)
               

               
               1-179, gnl|Hg17|chr11 (117765653-117765831)
               

               
               1-179, gnl|loxAfr1|scaffold_14592 (16889-16694)
               

               
               1-179, gnl|mm7|chr9 (44867834-44867640)
               

               
               1-179, gnl|Mm7|chr9 (44867820-44867642)
               

               
               1-179, gnl|monDom2|scaffold_2 (120300047-120299851)
               

               
               1-179, gnl|panTro1|chr9 (119773319-119773514)
               

               
               1-179, gnl|rheMac2|chr14 (116771779-116771974)
               

               
               1-179, gnl|rn3|chr8 (47897011-47896817)
               

               
               1-179, gnl|tetNig1|chr10 (10597471-10597662)
               

               
               1-179, gnl|xenTro1|scaffold_18 (551584-551390)
               


               
               476-672, gnl|bosTau2|chr15 (15131588-15131388)
               

               
               476-672, gnl|Hg17|chr11 (117772229-117772429)
               

               
               476-672, gnl|Mm7|chr9 (44860329-44860142)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-179, gnl|bosTau2|chr15 (15135351-15135173)
               

               
               1-179, gnl|canFam2|chr5 (18351485-18351290)
               

               
               1-179, gnl|danRer3|chr16 (16185831-16185635)
               

               
               1-179, gnl|echTel1|scaffold_38924 (1293-1488)
               

               
               1-179, gnl|fr1|chrUn (124399404-124399601)
               

               
               1-179, gnl|hg17|chr11 (117765640-117765835)
               

               
               1-179, gnl|Hg17|chr11 (117765653-117765831)
               

               
               1-179, gnl|loxAfr1|scaffold_14592 (16889-16694)
               

               
               1-179, gnl|mm7|chr9 (44867834-44867640)
               

               
               1-179, gnl|Mm7|chr9 (44867820-44867642)
               

               
               1-179, gnl|monDom2|scaffold_2 (120300047-120299851)
               

               
               1-179, gnl|panTro1|chr9 (119773319-119773514)
               

               
               1-179, gnl|rheMac2|chr14 (116771779-116771974)
               

               
               1-179, gnl|rn3|chr8 (47897011-47896817)
               

               
               1-179, gnl|tetNig1|chr10 (10597471-10597662)
               

               
               1-179, gnl|xenTro1|scaffold_18 (551584-551390)
               


               
               476-672, gnl|bosTau2|chr15 (15131588-15131388)
               

               
               476-672, gnl|Hg17|chr11 (117772229-117772429)
               

               
               476-672, gnl|Mm7|chr9 (44860329-44860142)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               rec (0.17307)
               

               
               hyp (0.142837)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               rec (0.17307)
               

               
               hyp (0.142837)

	1-179, gnl\|bosTau2\|chr15 (15135351-15135173)
	1-179, gnl\|canFam2\|chr5 (18351485-18351290)
	1-179, gnl\|danRer3\|chr16 (16185831-16185635)
	1-179, gnl\|echTel1\|scaffold_38924 (1293-1488)
	1-179, gnl\|fr1\|chrUn (124399404-124399601)
	1-179, gnl\|hg17\|chr11 (117765640-117765835)
	1-179, gnl\|Hg17\|chr11 (117765653-117765831)
	1-179, gnl\|loxAfr1\|scaffold_14592 (16889-16694)
	1-179, gnl\|mm7\|chr9 (44867834-44867640)
	1-179, gnl\|Mm7\|chr9 (44867820-44867642)
	1-179, gnl\|monDom2\|scaffold_2 (120300047-120299851)
	1-179, gnl\|panTro1\|chr9 (119773319-119773514)
	1-179, gnl\|rheMac2\|chr14 (116771779-116771974)
	1-179, gnl\|rn3\|chr8 (47897011-47896817)
	1-179, gnl\|tetNig1\|chr10 (10597471-10597662)
	1-179, gnl\|xenTro1\|scaffold_18 (551584-551390)

	476-672, gnl\|bosTau2\|chr15 (15131588-15131388)
	476-672, gnl\|Hg17\|chr11 (117772229-117772429)
	476-672, gnl\|Mm7\|chr9 (44860329-44860142)