Non-Coding RNA Search

Ss1.1-Mixn-0010o07.5

Sequence:


               
               TGGTGACCAGCCACAGTCTCCAGATCCTGGCACACTCCCCGGGACCCGCCACGGCTGACC
ACTTGTCCTACGGGGGCCGCCCCGGAAGCCGACAGGCCGGCGACTGGGCTGTGCTGGTGC
TGCCGCCACAGCCTTCCCCAGGTCCCCGTTCCTCCAGCCCCAGGCTCAGCGTGGCCTCGG
AAGGGGAAAGCCACCTCCTGAGAGAGGACTCCGAAGTCTTCAAGATGCTGCAAGAAAATC
GGGAGGCCCGGGTGGCCCCCCGGCAGTCCAGCTCCTTTCGGCTTTTGCAGGAAGCCCTGG
AGGCTGAGGAGAGAGGTGGCACGCCTGCTTTCCTGCCCAGCCCACTGAGCCCCCAGTCCT
CCCTGCCCACCTCCAGGGTGCTGGCCACCCCACCCAAGCTCCACACGTGTGAGAAGTGCA
GCACCAGCATCGCGAACCAGGCTGTGCGCATCCAGGAGGGGCGGTACCGCCATCCCGGCT
GCTACACCTGTGCCGACTGCGGGCTGAACTTAAAGATGCGCGGGCACTTCTGGGTGGGGG
ACGAGCTGTACTGCGAGAAGCATGCCCGCCAGCGCTACTCCGCACCCTCCACCCTCAACT
CCCAAGCCTGAGCGCCAGTTGCGTGTTCGGCACCCCTCCAACCCCGCCCCACCGCCCTCT
GCTGGCACCTCCGTGCCAGGGCCCAGCCAATAGCGAGTTCCTGTGGAAAGGCCTTGCGGG
GGTGGGGTGGGTCCCTTTCTCCTCACTGAGTGAGGCCAGAGGCTGGGACCTGTCTGTGCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGTGACCAGCCACAGTCTCCAGATCCTGGCACACTCCCCGGGACCCGCCACGGCTGACC
ACTTGTCCTACGGGGGCCGCCCCGGAAGCCGACAGGCCGGCGACTGGGCTGTGCTGGTGC
TGCCGCCACAGCCTTCCCCAGGTCCCCGTTCCTCCAGCCCCAGGCTCAGCGTGGCCTCGG
AAGGGGAAAGCCACCTCCTGAGAGAGGACTCCGAAGTCTTCAAGATGCTGCAAGAAAATC
GGGAGGCCCGGGTGGCCCCCCGGCAGTCCAGCTCCTTTCGGCTTTTGCAGGAAGCCCTGG
AGGCTGAGGAGAGAGGTGGCACGCCTGCTTTCCTGCCCAGCCCACTGAGCCCCCAGTCCT
CCCTGCCCACCTCCAGGGTGCTGGCCACCCCACCCAAGCTCCACACGTGTGAGAAGTGCA
GCACCAGCATCGCGAACCAGGCTGTGCGCATCCAGGAGGGGCGGTACCGCCATCCCGGCT
GCTACACCTGTGCCGACTGCGGGCTGAACTTAAAGATGCGCGGGCACTTCTGGGTGGGGG
ACGAGCTGTACTGCGAGAAGCATGCCCGCCAGCGCTACTCCGCACCCTCCACCCTCAACT
CCCAAGCCTGAGCGCCAGTTGCGTGTTCGGCACCCCTCCAACCCCGCCCCACCGCCCTCT
GCTGGCACCTCCGTGCCAGGGCCCAGCCAATAGCGAGTTCCTGTGGAAAGGCCTTGCGGG
GGTGGGGTGGGTCCCTTTCTCCTCACTGAGTGAGGCCAGAGGCTGGGACCTGTCTGTGCT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61865183|ref|XP_590513.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61865183|ref|XP_590513.1|

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               167-318, gnl|bosTau2|chr8 (30956983-30956832)
               

               
               167-318, gnl|Hg17|chr8 (22503051-22503202)
               

               
               167-318, gnl|Mm7|chr14 (64812272-64812142)
               


               
               434-613, gnl|bosTau2|chr8 (30953801-30953622)
               

               
               434-613, gnl|canFam2|chr25 (37675250-37674746)
               

               
               434-613, gnl|hg17|chr2 (119499849-119500356)
               

               
               434-613, gnl|Hg17|chr8 (22507191-22507379)
               

               
               434-613, gnl|loxAfr1|scaffold_30635 (63323-62789)
               

               
               434-613, gnl|mm7|chr14 (64809207-64808723)
               

               
               434-613, gnl|Mm7|chr14 (64809277-64809098)
               

               
               434-613, gnl|panTro1|chr13 (5520278-5520786)
               

               
               434-613, gnl|rheMac2|chr13 (125189707-125190212)
               

               
               434-613, gnl|rn3|chr15 (50580356-50579896)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               167-318, gnl|bosTau2|chr8 (30956983-30956832)
               

               
               167-318, gnl|Hg17|chr8 (22503051-22503202)
               

               
               167-318, gnl|Mm7|chr14 (64812272-64812142)
               


               
               434-613, gnl|bosTau2|chr8 (30953801-30953622)
               

               
               434-613, gnl|canFam2|chr25 (37675250-37674746)
               

               
               434-613, gnl|hg17|chr2 (119499849-119500356)
               

               
               434-613, gnl|Hg17|chr8 (22507191-22507379)
               

               
               434-613, gnl|loxAfr1|scaffold_30635 (63323-62789)
               

               
               434-613, gnl|mm7|chr14 (64809207-64808723)
               

               
               434-613, gnl|Mm7|chr14 (64809277-64809098)
               

               
               434-613, gnl|panTro1|chr13 (5520278-5520786)
               

               
               434-613, gnl|rheMac2|chr13 (125189707-125190212)
               

               
               434-613, gnl|rn3|chr15 (50580356-50579896)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               hyp (0.142837)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hyp (0.142837)

	167-318, gnl\|bosTau2\|chr8 (30956983-30956832)
	167-318, gnl\|Hg17\|chr8 (22503051-22503202)
	167-318, gnl\|Mm7\|chr14 (64812272-64812142)

	434-613, gnl\|bosTau2\|chr8 (30953801-30953622)
	434-613, gnl\|canFam2\|chr25 (37675250-37674746)
	434-613, gnl\|hg17\|chr2 (119499849-119500356)
	434-613, gnl\|Hg17\|chr8 (22507191-22507379)
	434-613, gnl\|loxAfr1\|scaffold_30635 (63323-62789)
	434-613, gnl\|mm7\|chr14 (64809207-64808723)
	434-613, gnl\|Mm7\|chr14 (64809277-64809098)
	434-613, gnl\|panTro1\|chr13 (5520278-5520786)
	434-613, gnl\|rheMac2\|chr13 (125189707-125190212)
	434-613, gnl\|rn3\|chr15 (50580356-50579896)