Non-Coding RNA Search

Ss1.1-Mixn-0010o17.5

Sequence:


               
               GGAACTGAGCTTTCGCCAACGCTAGTAGCTGGGTCGGAAACGAGGTGTCTGCGGTCCGTC
TAGGATTTGGACGGTTTTTGAGCGTTCGTGTCCCTCACTCGCCACCTTCCCTCCTTTGGG
TCCCACGATGCCGATGTACCAGGTAAAGCCCTACCACGAGGGCAGTGCATCTCTCCGTGT
AGAACTTCCCACCTGCATGTACCGGCTGCCCAACGTGCACTGCAGGACCGACAACCCAGC
TCCAGCCGCGGGCCACGTGCAGGAAGCGGCTGACCCATCGCTTCAGGCTCTCGAGTCCCG
CCAGGACGATATTTTGAAGCGTCTGTACGAGCTGAAAGCTGCGGTTGATGGTCTGTCCAA
GATGATTCAGACGCCAGACGCGGACTTGGATGTGACCAACATAATCCAAGCCGAGGAGCC
CGCCGCCTTAGCCACCAGCGCGTTCGACCTGAATTCTGTGCTTGGAAAGGACTACGGGGC
CCTGAAGGACATCGTGATCAACGCCAACCCCGCCTCGCCCCCCCTGTCCCTGCTCGTGCT
GCACCGGCTGCTGTGTGACCACTACAGGGTGCTGTCCGCGGTCCACACGCACTCGGCGGT
CCAGCGCGTGCCGCCGCACCTTCTCAAGTGCTTCGGCGAGCAGAAGCAGCAGCCCCGGCA
CGAGTACCAGCTGGGCTTCACTCTGATCTGGAAGGACGTGCCCAAGACGCAGATGAAGTT
CAGTGTCCAGACCATGTGTCCCATCGAAGGCGAAGGCAACATCGCCCGCTTCCTGTTCTC
GCTCTTGGGCCGGAAGCAGGACGCCGTGAGCCTGACCCTCATGGACAGCTGGGTGGACAC
AGCCGTCTTTCAGCTCAAAGAGGGAAGCAGTAAAGAAAAGGCCGCCGTGTTCCGCTCCAT
GAACTCTGCTCTCGGGAAGAGCCCCTGGCTCGTTGGGAACGAACTCACGGTGGCCGACGT
GGTGCTGTGGTCCGCGCTCCGGCAGACGGGGGCCTGCGGCGCGGCGGTGCCGGCCAGCGT
GCAGAAGTGGATGGGGGCCTGCGAAAACCTGGCCCCTTTCCACACGGCCCTCCAGCTCCT
TCGGTGAGCCTCGGTCACTGCCGTCGAGGATGGTGCTCTCTGGTGCCTGTGACTGATAAA
GGGACGTGTGCTCCACGTCCTTAGGCCACCTGTCACGTATCAATAAAAGCATCCTATAGT
CAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAACTGAGCTTTCGCCAACGCTAGTAGCTGGGTCGGAAACGAGGTGTCTGCGGTCCGTC
TAGGATTTGGACGGTTTTTGAGCGTTCGTGTCCCTCACTCGCCACCTTCCCTCCTTTGGG
TCCCACGATGCCGATGTACCAGGTAAAGCCCTACCACGAGGGCAGTGCATCTCTCCGTGT
AGAACTTCCCACCTGCATGTACCGGCTGCCCAACGTGCACTGCAGGACCGACAACCCAGC
TCCAGCCGCGGGCCACGTGCAGGAAGCGGCTGACCCATCGCTTCAGGCTCTCGAGTCCCG
CCAGGACGATATTTTGAAGCGTCTGTACGAGCTGAAAGCTGCGGTTGATGGTCTGTCCAA
GATGATTCAGACGCCAGACGCGGACTTGGATGTGACCAACATAATCCAAGCCGAGGAGCC
CGCCGCCTTAGCCACCAGCGCGTTCGACCTGAATTCTGTGCTTGGAAAGGACTACGGGGC
CCTGAAGGACATCGTGATCAACGCCAACCCCGCCTCGCCCCCCCTGTCCCTGCTCGTGCT
GCACCGGCTGCTGTGTGACCACTACAGGGTGCTGTCCGCGGTCCACACGCACTCGGCGGT
CCAGCGCGTGCCGCCGCACCTTCTCAAGTGCTTCGGCGAGCAGAAGCAGCAGCCCCGGCA
CGAGTACCAGCTGGGCTTCACTCTGATCTGGAAGGACGTGCCCAAGACGCAGATGAAGTT
CAGTGTCCAGACCATGTGTCCCATCGAAGGCGAAGGCAACATCGCCCGCTTCCTGTTCTC
GCTCTTGGGCCGGAAGCAGGACGCCGTGAGCCTGACCCTCATGGACAGCTGGGTGGACAC
AGCCGTCTTTCAGCTCAAAGAGGGAAGCAGTAAAGAAAAGGCCGCCGTGTTCCGCTCCAT
GAACTCTGCTCTCGGGAAGAGCCCCTGGCTCGTTGGGAACGAACTCACGGTGGCCGACGT
GGTGCTGTGGTCCGCGCTCCGGCAGACGGGGGCCTGCGGCGCGGCGGTGCCGGCCAGCGT
GCAGAAGTGGATGGGGGCCTGCGAAAACCTGGCCCCTTTCCACACGGCCCTCCAGCTCCT
TCGGTGAGCCTCGGTCACTGCCGTCGAGGATGGTGCTCTCTGGTGCCTGTGACTGATAAA
GGGACGTGTGCTCCACGTCCTTAGGCCACCTGTCACGTATCAATAAAAGCATCCTATAGT
CAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|51094454|gb|EAL23713.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|51094454|gb|EAL23713.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-266, gnl|bosTau2|chr25 (35792423-35792158)
               

               
               1-266, gnl|Hg17|chr7 (5822108-5822374)
               

               
               1-266, gnl|Mm7|chr5 (142937867-142937606)
               


               
               508-1087, gnl|bosTau2|chr22 (38110823-38110275)
               

               
               508-1087, gnl|Hg17|chr7 (5830731-5836563)
               

               
               508-1087, gnl|Mm7|chr5 (142932781-142930831)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-266, gnl|bosTau2|chr25 (35792423-35792158)
               

               
               1-266, gnl|Hg17|chr7 (5822108-5822374)
               

               
               1-266, gnl|Mm7|chr5 (142937867-142937606)
               


               
               508-1087, gnl|bosTau2|chr22 (38110823-38110275)
               

               
               508-1087, gnl|Hg17|chr7 (5830731-5836563)
               

               
               508-1087, gnl|Mm7|chr5 (142932781-142930831)

Expressed library(ies): 9 entry(ies)

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Expressed library(ies): 9 entry(ies)

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               fty (0.527519)
               

               
               eep (0.367692)
               

               
               ece (0.229305)
               

               
               nms (0.213858)
               

               
               nlu (0.191681)
               

               
               fbs (0.175346)
               

               
               cly (0.120642)
               

               
               jca (0.11396)
               

               
               eje (0.0988338)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fty (0.527519)
               

               
               eep (0.367692)
               

               
               ece (0.229305)
               

               
               nms (0.213858)
               

               
               nlu (0.191681)
               

               
               fbs (0.175346)
               

               
               cly (0.120642)
               

               
               jca (0.11396)
               

               
               eje (0.0988338)

	1-266, gnl\|bosTau2\|chr25 (35792423-35792158)
	1-266, gnl\|Hg17\|chr7 (5822108-5822374)
	1-266, gnl\|Mm7\|chr5 (142937867-142937606)

	508-1087, gnl\|bosTau2\|chr22 (38110823-38110275)
	508-1087, gnl\|Hg17\|chr7 (5830731-5836563)
	508-1087, gnl\|Mm7\|chr5 (142932781-142930831)

	fty (0.527519)
	eep (0.367692)
	ece (0.229305)
	nms (0.213858)
	nlu (0.191681)
	fbs (0.175346)
	cly (0.120642)
	jca (0.11396)
	eje (0.0988338)