Non-Coding RNA Search

Ss1.1-Mixn-0010o18.5

Sequence:


               
               GGGAGAGGGAGACAGGGAGAAGCAAAGAGAACGTGGAGAGATACGGAGCGAGTGGAAGAG
GAAGGAGGAAGGAGAGCAAGCTCCAGGGAACTGGAGGCGCCCTGGACGCCCAGCCCTCCG
GCCCAGCCGCCCTCGGACTCTGGACCGCGAGTCGTGGGCACCAGAAGCGAGACTCGGCCA
AGTCCTGCCCTACCAGGGATTGAGAAACGGAAATTTCACCACCCTCCAGCCAAACTTTCG
AGGACTGATTGCAGAGGAACTGGTGCTCCAGATGTTGCACTAGAGGCGCTGCAAGTGTGA
GCAGATGTACAGTCTGTAGGATGGGGGTAGACTGAATACCTGCTTCACGGAATACTTGCT
TCAAATCACCTTTCACATCTTCTTGTTGGAAAGACAATCATTGGAGAATCGTCTTGTTAC
TGTCAGCAAAACTGAAAAGAAATCAAGACATTAAGAATGCCACAGTGGCCAGCAGTTAAT
GATGCCAGTGTTATGCAAGCTTCGGCAAAGGAATTTTTTTCAAGACAGCGTGCCTCACTA
GCCAGAAATCAGGAAAGGTCGAACCTATCCTTTTTATCTCAGCTGTTTCTTCAGTCAGTG
CAGCCCCTCCTAATTAAAGTGAATTGAAACATGCATTGCCTTTTCAGCTTAATTGAGTAC
TTACTATGTGTGAATCACTGCACAGAATAGGGGAGGGAAAATGAGGGAGACAAATAAGAT
ATTGTCCCTGCCTTCACTGGATTTACAGTTAGTTTAAGGGCTTTTTTTGTCTTCTGCTCT
TAATTAAGTGTATCCCTAAGACAGGAAATGAATGGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGAGAGGGAGACAGGGAGAAGCAAAGAGAACGTGGAGAGATACGGAGCGAGTGGAAGAG
GAAGGAGGAAGGAGAGCAAGCTCCAGGGAACTGGAGGCGCCCTGGACGCCCAGCCCTCCG
GCCCAGCCGCCCTCGGACTCTGGACCGCGAGTCGTGGGCACCAGAAGCGAGACTCGGCCA
AGTCCTGCCCTACCAGGGATTGAGAAACGGAAATTTCACCACCCTCCAGCCAAACTTTCG
AGGACTGATTGCAGAGGAACTGGTGCTCCAGATGTTGCACTAGAGGCGCTGCAAGTGTGA
GCAGATGTACAGTCTGTAGGATGGGGGTAGACTGAATACCTGCTTCACGGAATACTTGCT
TCAAATCACCTTTCACATCTTCTTGTTGGAAAGACAATCATTGGAGAATCGTCTTGTTAC
TGTCAGCAAAACTGAAAAGAAATCAAGACATTAAGAATGCCACAGTGGCCAGCAGTTAAT
GATGCCAGTGTTATGCAAGCTTCGGCAAAGGAATTTTTTTCAAGACAGCGTGCCTCACTA
GCCAGAAATCAGGAAAGGTCGAACCTATCCTTTTTATCTCAGCTGTTTCTTCAGTCAGTG
CAGCCCCTCCTAATTAAAGTGAATTGAAACATGCATTGCCTTTTCAGCTTAATTGAGTAC
TTACTATGTGTGAATCACTGCACAGAATAGGGGAGGGAAAATGAGGGAGACAAATAAGAT
ATTGTCCCTGCCTTCACTGGATTTACAGTTAGTTTAAGGGCTTTTTTTGTCTTCTGCTCT
TAATTAAGTGTATCCCTAAGACAGGAAATGAATGGA

Aligned organism(s): 4 entry(ies)

More info

Aligned organism(s): 4 entry(ies)

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               3-197, gnl|bosTau2|chr7 (58278935-58279131)
               

               
               3-197, gnl|Hg17|chr5 (92942113-92941928)
               


               
               302-768, gnl|bosTau2|chr12 (3525172-3524708)
               

               
               302-768, gnl|Hg17|chr5 (92772974-92772538)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-197, gnl|bosTau2|chr7 (58278935-58279131)
               

               
               3-197, gnl|Hg17|chr5 (92942113-92941928)
               


               
               302-768, gnl|bosTau2|chr12 (3525172-3524708)
               

               
               302-768, gnl|Hg17|chr5 (92772974-92772538)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

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               spl (0.143184)
               

               
               ret (0.128733)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spl (0.143184)
               

               
               ret (0.128733)

	3-197, gnl\|bosTau2\|chr7 (58278935-58279131)
	3-197, gnl\|Hg17\|chr5 (92942113-92941928)

	302-768, gnl\|bosTau2\|chr12 (3525172-3524708)
	302-768, gnl\|Hg17\|chr5 (92772974-92772538)