Ss1.1-Mixn-0010p08.5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCGGCTGCGAGAAGCCACCTTACCCGCGCCCAGCGCCGACCCGCCGCGCTCCCCGCGCCG GAGCAGCCCCTCGGCTCCCGGGGCCGGACCGAGGCCCCAAGCAGCGCCGCGAGGTGTGGG GCGAGCCCAGGAGATGAAATGACAACGCCAACCCTCCAGAAAGCCATTGATTTGGTGACA AAAGCCACAGAAGAGGATAAAGCCAAGAATTACGAGGAGGCGCTCCGGCTCTACCAGCAT GCCGTGGAGTATTTCTTACACGCTATCAAATATGAGGCACACAACGACAAGGCCAAGGAG AGCATTCGAGCCAAGTGCATGCAGTACCTAGACCGGGCAGAGAAGCTGAAGGATTATTTA CGAAACAAAGAGAAGCATGGCAAGAAGCCAGTCAAAGAGAATCAGAGTGAGAGCAAGGGC AGTGATAGTGACAGCGAAGGGGATAATCCAGAGAAAAAGAAATTGCAAGAACAGCTGATG GGTGCCGTCGTGGTGGAGAAGCCCAACATTCGGTGGAATGATGTGGCCGGGCTGGAGGGC GCCAAAGAGGCCCTCAAAGAAGCTGTCATCTTGCCAATTAAATTTCCACATTTGTTCACA GGCAAGCGGACCCCTTGGCGGGGGATACTGCTCTTTGGACCCCCCGGCACAGGGAAATCC TACCTGGCCAAAGCAGTGGCAACGGAGGCCAACAACTCCACCTTCTTCTCTGTGTCCTCC TCAGACTTGATGTCTAAGTGGCTGGGGGAGAGTGAGAAGCTGGTCAAGAACCTCTTTGAG CTGGCCAGGCAGCACAAGCCCTCCATCATCTTCATCGATGAGGTGGATTCACTCTGCGGA TCCCGAAACGAGAATGAGAGCGAGGCTGCCCGAAGGATCAAAACAGAGTTCCTGGTCCAG ATGCAGGGGGTGGGGAATAACAATGACGGGACTCTGGTGCTTGGTGCCACAAACATCCCG TGGGTGTTGGATTCAGCCATTAGAAGGAGGTTTGAAAAGCGAATCTATATCCCGTTGCCG GAGGAGGCTGCCCGCGCCCAGATGTTCCGGTTGCATCTGGGAAGCACTCCCCACAACCTC ACAGAGGCCAACATCCACGAACTGGCCCGGAAGACAGAGGGCTACTCGGGCGCGGACATC AGCATCATTGTTCGGGACTCGCTCATGCAGCCTGTGAGGAAAGTGCAGTCAGCAACTCAC TTCAAAAAGGTCTGTGGCCCTTCCCGCACCAACCCCAGCATTATGATCGATGACCTCCTG ACCCCATGCTCCCCAGGGGACCCAGAGGCCATGGAGATGACTTGGATGGATGTCCCCGGT GACAAACTCTTAGAGCCTGTGGTTTGCATGTCGGACATGCTCCGGTCTTTGGCTACCACT CGGCCCACAGTGAATGCAGATGACCTCCTGAAAGTGAAGAAATTCTCAGAGGACTTTGGA CAGGAGAGTTAAAAGCTTCTTCACTTGCGTGATGGTGAAGGTGGGAGGTTGATGGGGGTA AATATATGGTACTCTCCACGTCATTGGCCAGACAGGGCTCCGGGGCTTGTCCTACAGTCA CTGCAGCGTCCCTCTGCTGTCTGGCCACCAGACAGGGAGCAGGAAGGAAGAGCCTCCCCG GCTAGAGATGCAGAAGCACGTTCAGCACCCAGTGGAATACGGGCTCTTCCTGCTTCCTCC TCCTCCTCCTCTTCTGGCTGCTCACCACCTCCTGGTCCTGCCCCTTCATGGTTTTTTTTT AAACCATTCTTTGTTCCCCTAAATTAATGCTGCTTGGATTTTCGTCTTGTTGATAAATAA AAACTCCCTGAAGCGACAGGGAGAGGGAGCAGCCCCCGCTGTGGGGTTGGTACAGCAGAC CTTCAGAACAGCTGGCCAGCGCCCCGCCGCCCATCCTTCCAGACCCCAGTCTTTCTCCTT GTGAACAGAATGGCTGATGCCCTGGGTCCACAGCCCAGGCTCTGCCGGGAAAGGCCAAGA GTAACGCTAAGCCATGCGCTCCCTCTGAGCCCCATGTCCTCCCTGCAGGAGGAGAGGACA GGTATTGTGAGCACAAAGCTGTGTAGATCAGAAAGAATGAGGGCAGTTGGGCGGCTTTCA CCGCCTCCTTCCCTCTGAATGTGAGAACACTGAACCCAGCCACTGCCCCTGGGTCCCTGT CCTGGAAATGGGCTAATAAATCCGTTCCCCTTCTTGAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCGGCTGCGAGAAGCCACCTTACCCGCGCCCAGCGCCGACCCGCCGCGCTCCCCGCGCCG GAGCAGCCCCTCGGCTCCCGGGGCCGGACCGAGGCCCCAAGCAGCGCCGCGAGGTGTGGG GCGAGCCCAGGAGATGAAATGACAACGCCAACCCTCCAGAAAGCCATTGATTTGGTGACA AAAGCCACAGAAGAGGATAAAGCCAAGAATTACGAGGAGGCGCTCCGGCTCTACCAGCAT GCCGTGGAGTATTTCTTACACGCTATCAAATATGAGGCACACAACGACAAGGCCAAGGAG AGCATTCGAGCCAAGTGCATGCAGTACCTAGACCGGGCAGAGAAGCTGAAGGATTATTTA CGAAACAAAGAGAAGCATGGCAAGAAGCCAGTCAAAGAGAATCAGAGTGAGAGCAAGGGC AGTGATAGTGACAGCGAAGGGGATAATCCAGAGAAAAAGAAATTGCAAGAACAGCTGATG GGTGCCGTCGTGGTGGAGAAGCCCAACATTCGGTGGAATGATGTGGCCGGGCTGGAGGGC GCCAAAGAGGCCCTCAAAGAAGCTGTCATCTTGCCAATTAAATTTCCACATTTGTTCACA GGCAAGCGGACCCCTTGGCGGGGGATACTGCTCTTTGGACCCCCCGGCACAGGGAAATCC TACCTGGCCAAAGCAGTGGCAACGGAGGCCAACAACTCCACCTTCTTCTCTGTGTCCTCC TCAGACTTGATGTCTAAGTGGCTGGGGGAGAGTGAGAAGCTGGTCAAGAACCTCTTTGAG CTGGCCAGGCAGCACAAGCCCTCCATCATCTTCATCGATGAGGTGGATTCACTCTGCGGA TCCCGAAACGAGAATGAGAGCGAGGCTGCCCGAAGGATCAAAACAGAGTTCCTGGTCCAG ATGCAGGGGGTGGGGAATAACAATGACGGGACTCTGGTGCTTGGTGCCACAAACATCCCG TGGGTGTTGGATTCAGCCATTAGAAGGAGGTTTGAAAAGCGAATCTATATCCCGTTGCCG GAGGAGGCTGCCCGCGCCCAGATGTTCCGGTTGCATCTGGGAAGCACTCCCCACAACCTC ACAGAGGCCAACATCCACGAACTGGCCCGGAAGACAGAGGGCTACTCGGGCGCGGACATC AGCATCATTGTTCGGGACTCGCTCATGCAGCCTGTGAGGAAAGTGCAGTCAGCAACTCAC TTCAAAAAGGTCTGTGGCCCTTCCCGCACCAACCCCAGCATTATGATCGATGACCTCCTG ACCCCATGCTCCCCAGGGGACCCAGAGGCCATGGAGATGACTTGGATGGATGTCCCCGGT GACAAACTCTTAGAGCCTGTGGTTTGCATGTCGGACATGCTCCGGTCTTTGGCTACCACT CGGCCCACAGTGAATGCAGATGACCTCCTGAAAGTGAAGAAATTCTCAGAGGACTTTGGA CAGGAGAGTTAAAAGCTTCTTCACTTGCGTGATGGTGAAGGTGGGAGGTTGATGGGGGTA AATATATGGTACTCTCCACGTCATTGGCCAGACAGGGCTCCGGGGCTTGTCCTACAGTCA CTGCAGCGTCCCTCTGCTGTCTGGCCACCAGACAGGGAGCAGGAAGGAAGAGCCTCCCCG GCTAGAGATGCAGAAGCACGTTCAGCACCCAGTGGAATACGGGCTCTTCCTGCTTCCTCC TCCTCCTCCTCTTCTGGCTGCTCACCACCTCCTGGTCCTGCCCCTTCATGGTTTTTTTTT AAACCATTCTTTGTTCCCCTAAATTAATGCTGCTTGGATTTTCGTCTTGTTGATAAATAA AAACTCCCTGAAGCGACAGGGAGAGGGAGCAGCCCCCGCTGTGGGGTTGGTACAGCAGAC CTTCAGAACAGCTGGCCAGCGCCCCGCCGCCCATCCTTCCAGACCCCAGTCTTTCTCCTT GTGAACAGAATGGCTGATGCCCTGGGTCCACAGCCCAGGCTCTGCCGGGAAAGGCCAAGA GTAACGCTAAGCCATGCGCTCCCTCTGAGCCCCATGTCCTCCCTGCAGGAGGAGAGGACA GGTATTGTGAGCACAAAGCTGTGTAGATCAGAAAGAATGAGGGCAGTTGGGCGGCTTTCA CCGCCTCCTTCCCTCTGAATGTGAGAACACTGAACCCAGCCACTGCCCCTGGGTCCCTGT CCTGGAAATGGGCTAATAAATCCGTTCCCCTTCTTGAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1027-1619, - strand, RNAz p=0.961687 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1027-1619, - strand, RNAz p=0.961687 |
| Aligned organism(s): 59 entry(ies) | More info |
| Aligned organism(s): 59 entry(ies) | Help | Less info |
| 1-159, gnl|bosTau2|chr18 (13875634-13875476) | |
| 1-159, gnl|canFam2|chr5 (83348682-83348551) | |
| 1-159, gnl|dasNov1|scaffold_129302 (676-807) | |
| 1-159, gnl|echTel1|scaffold_319253 (58196-58328) | |
| 1-159, gnl|fr1|chrUn (271687635-271687488) | |
| 1-159, gnl|hg17|chr16 (67902751-67902889) | |
| 1-159, gnl|Hg17|chr16 (67902770-67902936) | |
| 1-159, gnl|loxAfr1|scaffold_31997 (11973-11840) | |
| 1-159, gnl|mm7|chr8 (105631448-105631581) | |
| 1-159, gnl|Mm7|chr8 (105631467-105631628) | |
| 1-159, gnl|monDom2|scaffold_23 (4964294-4964110) | |
| 1-159, gnl|oryCun1|scaffold_180358 (8405-8274) | |
| 1-159, gnl|panTro1|chr18 (62243455-62243593) | |
| 1-159, gnl|rheMac2|chr20 (67688285-67688423) | |
| 1-159, gnl|rn3|chr19 (36892066-36892199) | |
| 272-419, gnl|bosTau2|chr18 (13871478-13871331) | |
| 272-419, gnl|Hg17|chr16 (67907629-67907776) | |
| 272-419, gnl|Mm7|chr8 (105636980-105637127) | |
| 596-759, gnl|bosTau2|chr18 (13869295-13869132) | |
| 596-759, gnl|canFam2|chr5 (83342485-83342309) | |
| 596-759, gnl|danRer3|chrUn (92222888-92223065) | |
| 596-759, gnl|dasNov1|scaffold_107917 (10438-10252) | |
| 596-759, gnl|echTel1|scaffold_319253 (63984-64167) | |
| 596-759, gnl|fr1|chrUn (235179407-235179227) | |
| 596-759, gnl|galGal2|chr2 (67549726-67549904) | |
| 596-759, gnl|hg17|chr16 (67910779-67910963) | |
| 596-759, gnl|Hg17|chr16 (67910785-67910948) | |
| 596-759, gnl|loxAfr1|scaffold_31997 (5032-4845) | |
| 596-759, gnl|mm7|chr8 (105640999-105641183) | |
| 596-759, gnl|Mm7|chr8 (105641005-105641168) | |
| 596-759, gnl|monDom2|scaffold_23 (4959443-4959259) | |
| 596-759, gnl|oryCun1|scaffold_205766 (46627-46445) | |
| 596-759, gnl|panTro1|chr18 (62251495-62251679) | |
| 596-759, gnl|rheMac2|chr20 (67696618-67696802) | |
| 596-759, gnl|rn3|chr19 (36901168-36901353) | |
| 596-759, gnl|tetNig1|chr13 (780526-780700) | |
| 596-759, gnl|xenTro1|scaffold_578 (149834-150009) | |
| 988-1211, gnl|bosTau2|chr18 (13867858-13867635) | |
| 988-1211, gnl|canFam2|chr5 (83341007-83340842) | |
| 988-1211, gnl|danRer3|chrUn (92225312-92225470) | |
| 988-1211, gnl|dasNov1|scaffold_129302 (1402-1539) | |
| 988-1211, gnl|echTel1|scaffold_319253 (65508-65673) | |
| 988-1211, gnl|fr1|chrUn (235178582-235178422) | |
| 988-1211, gnl|galGal2|chr2 (67552738-67552877) | |
| 988-1211, gnl|hg17|chr16 (67912426-67912591) | |
| 988-1211, gnl|Hg17|chr16 (67912453-67912676) | |
| 988-1211, gnl|loxAfr1|scaffold_31997 (3386-3221) | |
| 988-1211, gnl|mm7|chr8 (105643024-105643185) | |
| 988-1211, gnl|Mm7|chr8 (105643047-105643270) | |
| 988-1211, gnl|monDom2|scaffold_23 (4956592-4956431) | |
| 988-1211, gnl|oryCun1|scaffold_205766 (44518-44353) | |
| 988-1211, gnl|panTro1|chr18 (62253142-62253307) | |
| 988-1211, gnl|rheMac2|chr20 (67698246-67698411) | |
| 988-1211, gnl|rn3|chr19 (36903317-36903478) | |
| 988-1211, gnl|tetNig1|chr13 (781351-781511) | |
| 988-1211, gnl|xenTro1|scaffold_578 (152292-152450) | |
| 1343-2197, gnl|bosTau2|chr18 (13865810-13864947) | |
| 1343-2197, gnl|Hg17|chr16 (67915605-67916443) | |
| 1343-2197, gnl|Mm7|chr8 (105645169-105645893) |
| Aligned organism(s): 59 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-159, gnl|bosTau2|chr18 (13875634-13875476) | |
| 1-159, gnl|canFam2|chr5 (83348682-83348551) | |
| 1-159, gnl|dasNov1|scaffold_129302 (676-807) | |
| 1-159, gnl|echTel1|scaffold_319253 (58196-58328) | |
| 1-159, gnl|fr1|chrUn (271687635-271687488) | |
| 1-159, gnl|hg17|chr16 (67902751-67902889) | |
| 1-159, gnl|Hg17|chr16 (67902770-67902936) | |
| 1-159, gnl|loxAfr1|scaffold_31997 (11973-11840) | |
| 1-159, gnl|mm7|chr8 (105631448-105631581) | |
| 1-159, gnl|Mm7|chr8 (105631467-105631628) | |
| 1-159, gnl|monDom2|scaffold_23 (4964294-4964110) | |
| 1-159, gnl|oryCun1|scaffold_180358 (8405-8274) | |
| 1-159, gnl|panTro1|chr18 (62243455-62243593) | |
| 1-159, gnl|rheMac2|chr20 (67688285-67688423) | |
| 1-159, gnl|rn3|chr19 (36892066-36892199) | |
| 272-419, gnl|bosTau2|chr18 (13871478-13871331) | |
| 272-419, gnl|Hg17|chr16 (67907629-67907776) | |
| 272-419, gnl|Mm7|chr8 (105636980-105637127) | |
| 596-759, gnl|bosTau2|chr18 (13869295-13869132) | |
| 596-759, gnl|canFam2|chr5 (83342485-83342309) | |
| 596-759, gnl|danRer3|chrUn (92222888-92223065) | |
| 596-759, gnl|dasNov1|scaffold_107917 (10438-10252) | |
| 596-759, gnl|echTel1|scaffold_319253 (63984-64167) | |
| 596-759, gnl|fr1|chrUn (235179407-235179227) | |
| 596-759, gnl|galGal2|chr2 (67549726-67549904) | |
| 596-759, gnl|hg17|chr16 (67910779-67910963) | |
| 596-759, gnl|Hg17|chr16 (67910785-67910948) | |
| 596-759, gnl|loxAfr1|scaffold_31997 (5032-4845) | |
| 596-759, gnl|mm7|chr8 (105640999-105641183) | |
| 596-759, gnl|Mm7|chr8 (105641005-105641168) | |
| 596-759, gnl|monDom2|scaffold_23 (4959443-4959259) | |
| 596-759, gnl|oryCun1|scaffold_205766 (46627-46445) | |
| 596-759, gnl|panTro1|chr18 (62251495-62251679) | |
| 596-759, gnl|rheMac2|chr20 (67696618-67696802) | |
| 596-759, gnl|rn3|chr19 (36901168-36901353) | |
| 596-759, gnl|tetNig1|chr13 (780526-780700) | |
| 596-759, gnl|xenTro1|scaffold_578 (149834-150009) | |
| 988-1211, gnl|bosTau2|chr18 (13867858-13867635) | |
| 988-1211, gnl|canFam2|chr5 (83341007-83340842) | |
| 988-1211, gnl|danRer3|chrUn (92225312-92225470) | |
| 988-1211, gnl|dasNov1|scaffold_129302 (1402-1539) | |
| 988-1211, gnl|echTel1|scaffold_319253 (65508-65673) | |
| 988-1211, gnl|fr1|chrUn (235178582-235178422) | |
| 988-1211, gnl|galGal2|chr2 (67552738-67552877) | |
| 988-1211, gnl|hg17|chr16 (67912426-67912591) | |
| 988-1211, gnl|Hg17|chr16 (67912453-67912676) | |
| 988-1211, gnl|loxAfr1|scaffold_31997 (3386-3221) | |
| 988-1211, gnl|mm7|chr8 (105643024-105643185) | |
| 988-1211, gnl|Mm7|chr8 (105643047-105643270) | |
| 988-1211, gnl|monDom2|scaffold_23 (4956592-4956431) | |
| 988-1211, gnl|oryCun1|scaffold_205766 (44518-44353) | |
| 988-1211, gnl|panTro1|chr18 (62253142-62253307) | |
| 988-1211, gnl|rheMac2|chr20 (67698246-67698411) | |
| 988-1211, gnl|rn3|chr19 (36903317-36903478) | |
| 988-1211, gnl|tetNig1|chr13 (781351-781511) | |
| 988-1211, gnl|xenTro1|scaffold_578 (152292-152450) | |
| 1343-2197, gnl|bosTau2|chr18 (13865810-13864947) | |
| 1343-2197, gnl|Hg17|chr16 (67915605-67916443) | |
| 1343-2197, gnl|Mm7|chr8 (105645169-105645893) |
| Expressed library(ies): 14 entry(ies) | More info |
| Expressed library(ies): 14 entry(ies) | Help | Less info |
| fcc (0.593354) | |
| csp (0.322373) | |
| pty (0.285429) | |
| ece (0.229305) | |
| nbm (0.198649) | |
| nlu (0.191681) | |
| nep (0.183925) | |
| ill (0.175593) | |
| pla (0.133672) | |
| ute (0.132784) | |
| ebs (0.118301) | |
| ecc (0.115035) | |
| jca (0.11396) | |
| eje (0.0988338) |
| Expressed library(ies): 14 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fcc (0.593354) | |
| csp (0.322373) | |
| pty (0.285429) | |
| ece (0.229305) | |
| nbm (0.198649) | |
| nlu (0.191681) | |
| nep (0.183925) | |
| ill (0.175593) | |
| pla (0.133672) | |
| ute (0.132784) | |
| ebs (0.118301) | |
| ecc (0.115035) | |
| jca (0.11396) | |
| eje (0.0988338) |