Ss1.1-Mixn-0010p13.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGCTCTTTCTCTTGCAGGATTCTGGACAACGGCTGCAGCTCCTGGCTGAAACCTTCCACC ACAAGCGGTGTGTCCTCAAGGTCCACTCCTTCACACATGAGGCACCCAATCAGCGGCGGA GGCTGTTCCTATGCAGTGCAGCCACCGACGGCAGCTTGGCCTTCTGGGATCTCACCACCG TGCTAGACCATGGCTCCACTGCCCTGGAGCCTCCAGTGGAACCTGGGCTTCCCTACCGGC TGGGCACCCCCTGCCTGACTCTCCAGGCTCACAGCTGTGGTGTCAACAGCCTACACACCT TGCCCACACCAGCGGGCCATCTCGTGGCCAGTGGCAGTGAGGATGGCTCCCTCCATGTCT TTGTGCTTGCCGTGGAGGTACCAGAGCTGGAAGAGGCTGTGGGGGGTGCTGAGCAGCTGC CTCAGCTGCAAGTGCTGGAGGAATACTCTGTCCCCTCTTAGATGTGGCTCAGTGGAGGGA GACCCAGCATGGCCAGCCCAGTGTGGAGCACATCACTCACAGCCTGCAGAAGCTGTAGAC GGGCAAACATTTGACCAAACAGGTGTGGTCGAGGCTCCTGGAGGAAAGAAAGGGCCTGCT GGTCTCATCCTTTGCTTCCCCCGCAACCCTCCCACATACCCCGCTTTGCTGTGCACTTAC CCCTAGGATGTGTACCCGGTTATAGTATGAACTGAAATCCATGCTGAGCTGTACCAGGAA CTTGCAAACCTAAAGACAGAGACCAAGTCACTGGCCTGTCTTTGTGCCCCTAACCAGAAT AAACAGAATGTGGAGGGGAGGAGGCGGCAGCCGTGGGTTCCAGACCTCAGAGCAGGAGCT GAAGGTGAGTAGAATGCTGTCAGGGCAGAGTAAGAAATGTGCCCCACTCCACACAATAGG ATAAAACGTCATAACAGAAGCAATTTATTTTGGCTCCAGGTAGCTTAACAAAATCTGTGG GTGTGTTGTGTTTTTGCTTTTTTTTTTTTTTTGATACTTGTTTTTTTCAGTTGATTTTGT GGACATTCCCAGACATTGGGGCCTCTGTGGCCTTAGATGTGGCTCAGTGGAGGGAGACCC AGCATGGCCAGCCCAGTGTGGAGCACATCACTCACAGCCTGCAGAAGCTGTAGACGGGCA AACATTTGACCAAACAGGTGTGGTCGAGGCTCCCCTAGGATGTGTACCCGGTTATAGTAT GAACTGAAATCCATGCTGAGCTGTACCAGGAACTTGCAAACCATCTCCGTGCGTGCAGTG ATGTGGAGCCCCGGGGCTGTGCAGGCCAGCATTCCTGTGTGGCTCAGCAGGTCTGGGAAG GGGAGGATGCTGTTGAAGAGCAGCAACCACTCACCCTCATCATGCAACAGGGAGAAGTCC AGACTGCTCACAGGTGGGAAAGTGGGGTACAGACCTTTTTCCACGCTGCACCTGTAACCC TCAAAGAGTGTGGCAAGACGTGCGCAGTTGTACATGACAAAGGTGCCACTTTTGGTGCCC TTTGTGGAAATGCTGTTGTCAGCCAGGGCCAGGAGAAGCTGATTCTGTGGGGCTGTGCTG AGCATCTCAAACTTAATGGTTGCCACACAGAGAACCCTGAAGATTTCTGTCCAGGCTGGG TCTTGTGTTAGGTCCTTGCCATACTTCAGTGCTGAGGCCTTGCACACCTGCATATGCCGG AGCTCGTAGTACTCGGGAGCAGTCAGGGTGCCTGGCGCACCAGCTACTTTCACTGGGCCG CAGACCAGGTGCTTCTGTCTGAGAGGAGCCTGGTCATCCAACTTCCACCAAAGCAGGTCC AACTTTTGTTGCTGGAACTCCTCCTCACAACTCACCACGTGTACAACCACACAACCATCT GCACCAGTGTCTGAGACTGCAGCCAGGCCTAGAGAGCTGTGTTCCGGCCAATGCTGCACA GCCTCCTGCAGCTCAGCCAGCAGAGAAAGCAGCTCCTCCGTCACTAGGCAGCTGTCCAGG TTGGGGTCATAGCCAGCTCTGCGGCCCCGTTCGTCCACCAGCTCCTTCAGGCACACTTGG CCCAGGGCGCCTGGGGGTAGGGCTCCCGAATCATGGGCAGGGGTGAGCTCTGCAAGTGCA CGGCTCCTCAGGGCTTCGGTCACAGTCCTGGCTCTCCCCGAGGCCGCGGGCCATTCCACC CGCAGCTGCTGCAAGAAGGTCAGCATGTGCGGGTCCCGCACGGCGGGCACTAGGCGCACA CTCACCCTGTGAGCGTGAAGAGCTCGCGCCAGGTGGTCGGCCACGAGCACGGCACGCAGC TGGCTCAGGCGGAGGGCGCAGGGG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGCTCTTTCTCTTGCAGGATTCTGGACAACGGCTGCAGCTCCTGGCTGAAACCTTCCACC ACAAGCGGTGTGTCCTCAAGGTCCACTCCTTCACACATGAGGCACCCAATCAGCGGCGGA GGCTGTTCCTATGCAGTGCAGCCACCGACGGCAGCTTGGCCTTCTGGGATCTCACCACCG TGCTAGACCATGGCTCCACTGCCCTGGAGCCTCCAGTGGAACCTGGGCTTCCCTACCGGC TGGGCACCCCCTGCCTGACTCTCCAGGCTCACAGCTGTGGTGTCAACAGCCTACACACCT TGCCCACACCAGCGGGCCATCTCGTGGCCAGTGGCAGTGAGGATGGCTCCCTCCATGTCT TTGTGCTTGCCGTGGAGGTACCAGAGCTGGAAGAGGCTGTGGGGGGTGCTGAGCAGCTGC CTCAGCTGCAAGTGCTGGAGGAATACTCTGTCCCCTCTTAGATGTGGCTCAGTGGAGGGA GACCCAGCATGGCCAGCCCAGTGTGGAGCACATCACTCACAGCCTGCAGAAGCTGTAGAC GGGCAAACATTTGACCAAACAGGTGTGGTCGAGGCTCCTGGAGGAAAGAAAGGGCCTGCT GGTCTCATCCTTTGCTTCCCCCGCAACCCTCCCACATACCCCGCTTTGCTGTGCACTTAC CCCTAGGATGTGTACCCGGTTATAGTATGAACTGAAATCCATGCTGAGCTGTACCAGGAA CTTGCAAACCTAAAGACAGAGACCAAGTCACTGGCCTGTCTTTGTGCCCCTAACCAGAAT AAACAGAATGTGGAGGGGAGGAGGCGGCAGCCGTGGGTTCCAGACCTCAGAGCAGGAGCT GAAGGTGAGTAGAATGCTGTCAGGGCAGAGTAAGAAATGTGCCCCACTCCACACAATAGG ATAAAACGTCATAACAGAAGCAATTTATTTTGGCTCCAGGTAGCTTAACAAAATCTGTGG GTGTGTTGTGTTTTTGCTTTTTTTTTTTTTTTGATACTTGTTTTTTTCAGTTGATTTTGT GGACATTCCCAGACATTGGGGCCTCTGTGGCCTTAGATGTGGCTCAGTGGAGGGAGACCC AGCATGGCCAGCCCAGTGTGGAGCACATCACTCACAGCCTGCAGAAGCTGTAGACGGGCA AACATTTGACCAAACAGGTGTGGTCGAGGCTCCCCTAGGATGTGTACCCGGTTATAGTAT GAACTGAAATCCATGCTGAGCTGTACCAGGAACTTGCAAACCATCTCCGTGCGTGCAGTG ATGTGGAGCCCCGGGGCTGTGCAGGCCAGCATTCCTGTGTGGCTCAGCAGGTCTGGGAAG GGGAGGATGCTGTTGAAGAGCAGCAACCACTCACCCTCATCATGCAACAGGGAGAAGTCC AGACTGCTCACAGGTGGGAAAGTGGGGTACAGACCTTTTTCCACGCTGCACCTGTAACCC TCAAAGAGTGTGGCAAGACGTGCGCAGTTGTACATGACAAAGGTGCCACTTTTGGTGCCC TTTGTGGAAATGCTGTTGTCAGCCAGGGCCAGGAGAAGCTGATTCTGTGGGGCTGTGCTG AGCATCTCAAACTTAATGGTTGCCACACAGAGAACCCTGAAGATTTCTGTCCAGGCTGGG TCTTGTGTTAGGTCCTTGCCATACTTCAGTGCTGAGGCCTTGCACACCTGCATATGCCGG AGCTCGTAGTACTCGGGAGCAGTCAGGGTGCCTGGCGCACCAGCTACTTTCACTGGGCCG CAGACCAGGTGCTTCTGTCTGAGAGGAGCCTGGTCATCCAACTTCCACCAAAGCAGGTCC AACTTTTGTTGCTGGAACTCCTCCTCACAACTCACCACGTGTACAACCACACAACCATCT GCACCAGTGTCTGAGACTGCAGCCAGGCCTAGAGAGCTGTGTTCCGGCCAATGCTGCACA GCCTCCTGCAGCTCAGCCAGCAGAGAAAGCAGCTCCTCCGTCACTAGGCAGCTGTCCAGG TTGGGGTCATAGCCAGCTCTGCGGCCCCGTTCGTCCACCAGCTCCTTCAGGCACACTTGG CCCAGGGCGCCTGGGGGTAGGGCTCCCGAATCATGGGCAGGGGTGAGCTCTGCAAGTGCA CGGCTCCTCAGGGCTTCGGTCACAGTCCTGGCTCTCCCCGAGGCCGCGGGCCATTCCACC CGCAGCTGCTGCAAGAAGGTCAGCATGTGCGGGTCCCGCACGGCGGGCACTAGGCGCACA CTCACCCTGTGAGCGTGAAGAGCTCGCGCCAGGTGGTCGGCCACGAGCACGGCACGCAGC TGGCTCAGGCGGAGGGCGCAGGGG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 278-1884, + strand, RNAz p=0.854629 | |
| 1755-1858, - strand, RNAz p=0.854746 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 278-1884, + strand, RNAz p=0.854629 | |
| 1755-1858, - strand, RNAz p=0.854746 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of AK093054, - |
| Aligned organism(s): 48 entry(ies) | More info |
| Aligned organism(s): 48 entry(ies) | Help | Less info |
| 1-119, gnl|bosTau2|chr22 (40010293-40010411) | |
| 1-119, gnl|canFam2|chr20 (43149099-43148969) | |
| 1-119, gnl|danRer3|chr8 (20080121-20079980) | |
| 1-119, gnl|dasNov1|scaffold_27263 (1573-1699) | |
| 1-119, gnl|echTel1|scaffold_321446 (73214-73342) | |
| 1-119, gnl|fr1|chrUn (239287320-239287204) | |
| 1-119, gnl|galGal2|chr12 (11626433-11626290) | |
| 1-119, gnl|hg17|chr3 (49026817-49026947) | |
| 1-119, gnl|Hg17|chr3 (49026819-49026937) | |
| 1-119, gnl|loxAfr1|scaffold_593 (76972-77102) | |
| 1-119, gnl|mm7|chr9 (108286484-108286356) | |
| 1-119, gnl|Mm7|chr9 (108286480-108286362) | |
| 1-119, gnl|monDom2|scaffold_5 (76448985-76448860) | |
| 1-119, gnl|panTro1|chr2 (50548408-50548538) | |
| 1-119, gnl|rheMac2|chr2 (87443544-87443414) | |
| 1-119, gnl|rn3|chr8 (113639304-113639176) | |
| 239-456, gnl|bosTau2|chr22 (40010714-40010931) | |
| 239-456, gnl|Hg17|chr3 (49027263-49027483) | |
| 239-456, gnl|Mm7|chr9 (108286081-108285861) | |
| 457-746, gnl|bosTau2|chr22 (40011488-40011779) | |
| 457-746, gnl|Hg17|chr3 (49028024-49028321) | |
| 457-746, gnl|Mm7|chr9 (108285340-108285045) | |
| 793-955, gnl|bosTau2|chr22 (40011257-40011414) | |
| 793-955, gnl|Hg17|chr3 (49027821-49027967) | |
| 793-955, gnl|Mm7|chr9 (108285528-108285391) | |
| 1012-1180, gnl|bosTau2|chr22 (40011448-40011616) | |
| 1012-1180, gnl|Hg17|chr3 (49027984-49028150) | |
| 1012-1180, gnl|Mm7|chr9 (108285371-108285212) | |
| 1350-1540, gnl|bosTau2|chr22 (40012057-40012246) | |
| 1350-1540, gnl|Hg17|chr3 (49028590-49028779) | |
| 1350-1540, gnl|Mm7|chr9 (108284791-108284608) | |
| 1755-1884, gnl|bosTau2|chr22 (40013003-40013132) | |
| 1755-1884, gnl|canFam2|chr20 (43146288-43146187) | |
| 1755-1884, gnl|dasNov1|scaffold_27263 (4464-4565) | |
| 1755-1884, gnl|echTel1|scaffold_321446 (76194-76295) | |
| 1755-1884, gnl|fr1|chrUn (77390654-77390740) | |
| 1755-1884, gnl|galGal2|chr12 (11622084-11621984) | |
| 1755-1884, gnl|hg17|chr3 (49029654-49029755) | |
| 1755-1884, gnl|Hg17|chr3 (49029665-49029794) | |
| 1755-1884, gnl|mm7|chr9 (108283855-108283754) | |
| 1755-1884, gnl|Mm7|chr9 (108283842-108283713) | |
| 1755-1884, gnl|monDom2|scaffold_5 (76437731-76437639) | |
| 1755-1884, gnl|rheMac2|chr2 (87440734-87440633) | |
| 1755-1884, gnl|rn3|chr8 (113636671-113636570) | |
| 1755-1884, gnl|tetNig1|chr9 (672291-672203) | |
| 1966-2233, gnl|bosTau2|chr22 (40013397-40013658) | |
| 1966-2233, gnl|Hg17|chr3 (49030052-49030313) | |
| 1966-2233, gnl|Mm7|chr9 (108283481-108283226) |
| Aligned organism(s): 48 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-119, gnl|bosTau2|chr22 (40010293-40010411) | |
| 1-119, gnl|canFam2|chr20 (43149099-43148969) | |
| 1-119, gnl|danRer3|chr8 (20080121-20079980) | |
| 1-119, gnl|dasNov1|scaffold_27263 (1573-1699) | |
| 1-119, gnl|echTel1|scaffold_321446 (73214-73342) | |
| 1-119, gnl|fr1|chrUn (239287320-239287204) | |
| 1-119, gnl|galGal2|chr12 (11626433-11626290) | |
| 1-119, gnl|hg17|chr3 (49026817-49026947) | |
| 1-119, gnl|Hg17|chr3 (49026819-49026937) | |
| 1-119, gnl|loxAfr1|scaffold_593 (76972-77102) | |
| 1-119, gnl|mm7|chr9 (108286484-108286356) | |
| 1-119, gnl|Mm7|chr9 (108286480-108286362) | |
| 1-119, gnl|monDom2|scaffold_5 (76448985-76448860) | |
| 1-119, gnl|panTro1|chr2 (50548408-50548538) | |
| 1-119, gnl|rheMac2|chr2 (87443544-87443414) | |
| 1-119, gnl|rn3|chr8 (113639304-113639176) | |
| 239-456, gnl|bosTau2|chr22 (40010714-40010931) | |
| 239-456, gnl|Hg17|chr3 (49027263-49027483) | |
| 239-456, gnl|Mm7|chr9 (108286081-108285861) | |
| 457-746, gnl|bosTau2|chr22 (40011488-40011779) | |
| 457-746, gnl|Hg17|chr3 (49028024-49028321) | |
| 457-746, gnl|Mm7|chr9 (108285340-108285045) | |
| 793-955, gnl|bosTau2|chr22 (40011257-40011414) | |
| 793-955, gnl|Hg17|chr3 (49027821-49027967) | |
| 793-955, gnl|Mm7|chr9 (108285528-108285391) | |
| 1012-1180, gnl|bosTau2|chr22 (40011448-40011616) | |
| 1012-1180, gnl|Hg17|chr3 (49027984-49028150) | |
| 1012-1180, gnl|Mm7|chr9 (108285371-108285212) | |
| 1350-1540, gnl|bosTau2|chr22 (40012057-40012246) | |
| 1350-1540, gnl|Hg17|chr3 (49028590-49028779) | |
| 1350-1540, gnl|Mm7|chr9 (108284791-108284608) | |
| 1755-1884, gnl|bosTau2|chr22 (40013003-40013132) | |
| 1755-1884, gnl|canFam2|chr20 (43146288-43146187) | |
| 1755-1884, gnl|dasNov1|scaffold_27263 (4464-4565) | |
| 1755-1884, gnl|echTel1|scaffold_321446 (76194-76295) | |
| 1755-1884, gnl|fr1|chrUn (77390654-77390740) | |
| 1755-1884, gnl|galGal2|chr12 (11622084-11621984) | |
| 1755-1884, gnl|hg17|chr3 (49029654-49029755) | |
| 1755-1884, gnl|Hg17|chr3 (49029665-49029794) | |
| 1755-1884, gnl|mm7|chr9 (108283855-108283754) | |
| 1755-1884, gnl|Mm7|chr9 (108283842-108283713) | |
| 1755-1884, gnl|monDom2|scaffold_5 (76437731-76437639) | |
| 1755-1884, gnl|rheMac2|chr2 (87440734-87440633) | |
| 1755-1884, gnl|rn3|chr8 (113636671-113636570) | |
| 1755-1884, gnl|tetNig1|chr9 (672291-672203) | |
| 1966-2233, gnl|bosTau2|chr22 (40013397-40013658) | |
| 1966-2233, gnl|Hg17|chr3 (49030052-49030313) | |
| 1966-2233, gnl|Mm7|chr9 (108283481-108283226) |
| Expressed library(ies): 31 entry(ies) | More info |
| Expressed library(ies): 31 entry(ies) | Help | Less info |
| pty (0.428143) | |
| amn (0.417711) | |
| hea (0.408998) | |
| fcc (0.39557) | |
| elu (0.385356) | |
| fbs (0.350693) | |
| eye (0.341006) | |
| fhi (0.339155) | |
| csp (0.322373) | |
| cte (0.29274) | |
| spl (0.286369) | |
| pla (0.267344) | |
| bla (0.248694) | |
| pgl (0.236967) | |
| ecc (0.23007) | |
| cbl (0.229595) | |
| jca (0.22792) | |
| sto (0.179824) | |
| fty (0.17584) | |
| cut (0.169924) | |
| tbr (0.154178) | |
| nca (0.136874) | |
| che (0.136314) | |
| nmm (0.132802) | |
| eep (0.122564) | |
| cly (0.120642) | |
| eru (0.120048) | |
| cty (0.10408) | |
| nbm (0.0993246) | |
| jej (0.0989218) | |
| ldo (0.0970026) |
| Expressed library(ies): 31 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pty (0.428143) | |
| amn (0.417711) | |
| hea (0.408998) | |
| fcc (0.39557) | |
| elu (0.385356) | |
| fbs (0.350693) | |
| eye (0.341006) | |
| fhi (0.339155) | |
| csp (0.322373) | |
| cte (0.29274) | |
| spl (0.286369) | |
| pla (0.267344) | |
| bla (0.248694) | |
| pgl (0.236967) | |
| ecc (0.23007) | |
| cbl (0.229595) | |
| jca (0.22792) | |
| sto (0.179824) | |
| fty (0.17584) | |
| cut (0.169924) | |
| tbr (0.154178) | |
| nca (0.136874) | |
| che (0.136314) | |
| nmm (0.132802) | |
| eep (0.122564) | |
| cly (0.120642) | |
| eru (0.120048) | |
| cty (0.10408) | |
| nbm (0.0993246) | |
| jej (0.0989218) | |
| ldo (0.0970026) |