Ss1.1-Mixn-0011a10.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCACCCCGGGCGTCCCCGCAGGGGGCAGCGCCCCCGCGTGCCCGCTGCTCCTGGCCGACA AGAGCCCGGCGGGCCTGAAGGGCAAGGAGCCCGTGGTGTACCCCTGGATGAAGAAGATCC ATGTCAGCGCCGTCAACCCCAGTTATAACGGAGGGGAGCCCAAGCGCTCCCGAACCGCCT ACACCCGGCAGCAGGTCTTGGAGCTGGAGAAGGAGTTCCACTTTAACCGCTACCTGACCC GGCGGCGCCGCATCGAGATCGACCACACGCTCTGCTTGTCCGAGCGCCAGGTCAAGATCT GGTTTCAGAACCGGAGGATGAAGTGGAAGAAAGATCATAAACTGCCCAACACTAAAATGC GATCCTCCAACTCAGCCTCAGCCTCAGCAGGCCCGCCAGGGAAACCACAAACTCAGAGCC CGCACCCGCACCCACACCCTCACCCCCATCAGGGCGCCTCCACACCCATTCCCTCCTCCA TTTAATCCTCCA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCACCCCGGGCGTCCCCGCAGGGGGCAGCGCCCCCGCGTGCCCGCTGCTCCTGGCCGACA AGAGCCCGGCGGGCCTGAAGGGCAAGGAGCCCGTGGTGTACCCCTGGATGAAGAAGATCC ATGTCAGCGCCGTCAACCCCAGTTATAACGGAGGGGAGCCCAAGCGCTCCCGAACCGCCT ACACCCGGCAGCAGGTCTTGGAGCTGGAGAAGGAGTTCCACTTTAACCGCTACCTGACCC GGCGGCGCCGCATCGAGATCGACCACACGCTCTGCTTGTCCGAGCGCCAGGTCAAGATCT GGTTTCAGAACCGGAGGATGAAGTGGAAGAAAGATCATAAACTGCCCAACACTAAAATGC GATCCTCCAACTCAGCCTCAGCCTCAGCAGGCCCGCCAGGGAAACCACAAACTCAGAGCC CGCACCCGCACCCACACCCTCACCCCCATCAGGGCGCCTCCACACCCATTCCCTCCTCCA TTTAATCCTCCA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 211-383, - strand, RNAz p=0.92181 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 211-383, - strand, RNAz p=0.92181 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 132-383, gnl|bosTau2|chr19 (31195918-31195664) | |
| 132-383, gnl|Hg17|chr17 (44009382-44009128) | |
| 132-383, gnl|Mm7|chr11 (96429068-96429322) | |
| 155-334, gnl|bosTau2|chr12 (17151890-17152069) | |
| 155-334, gnl|canFam2|chr25 (14730367-14730183) | |
| 155-334, gnl|danRer3|chr24 (18852039-18852204) | |
| 155-334, gnl|dasNov1|scaffold_4770 (27865-27694) | |
| 155-334, gnl|echTel1|scaffold_218061 (8013-7833) | |
| 155-334, gnl|fr1|chrUn (57904260-57904095) | |
| 155-334, gnl|galGal2|chrUn (97586324-97586139) | |
| 155-334, gnl|hg17|chr13 (27396453-27396637) | |
| 155-334, gnl|Hg17|chr13 (27396418-27396597) | |
| 155-334, gnl|loxAfr1|scaffold_24587 (1080-1260) | |
| 155-334, gnl|mm7|chr5 (146168844-146169028) | |
| 155-334, gnl|Mm7|chr5 (146168809-146168988) | |
| 155-334, gnl|monDom2|scaffold_15 (37112218-37112402) | |
| 155-334, gnl|oryCun1|scaffold_206235 (92023-91839) | |
| 155-334, gnl|panTro1|chr14 (26578133-26578317) | |
| 155-334, gnl|rheMac2|chr17 (7585963-7586147) | |
| 155-334, gnl|rn3|chr6 (76921856-76921663) | |
| 155-334, gnl|tetNig1|chr6 (2711191-2711026) | |
| 155-334, gnl|xenTro1|scaffold_449 (633919-634092) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 132-383, gnl|bosTau2|chr19 (31195918-31195664) | |
| 132-383, gnl|Hg17|chr17 (44009382-44009128) | |
| 132-383, gnl|Mm7|chr11 (96429068-96429322) | |
| 155-334, gnl|bosTau2|chr12 (17151890-17152069) | |
| 155-334, gnl|canFam2|chr25 (14730367-14730183) | |
| 155-334, gnl|danRer3|chr24 (18852039-18852204) | |
| 155-334, gnl|dasNov1|scaffold_4770 (27865-27694) | |
| 155-334, gnl|echTel1|scaffold_218061 (8013-7833) | |
| 155-334, gnl|fr1|chrUn (57904260-57904095) | |
| 155-334, gnl|galGal2|chrUn (97586324-97586139) | |
| 155-334, gnl|hg17|chr13 (27396453-27396637) | |
| 155-334, gnl|Hg17|chr13 (27396418-27396597) | |
| 155-334, gnl|loxAfr1|scaffold_24587 (1080-1260) | |
| 155-334, gnl|mm7|chr5 (146168844-146169028) | |
| 155-334, gnl|Mm7|chr5 (146168809-146168988) | |
| 155-334, gnl|monDom2|scaffold_15 (37112218-37112402) | |
| 155-334, gnl|oryCun1|scaffold_206235 (92023-91839) | |
| 155-334, gnl|panTro1|chr14 (26578133-26578317) | |
| 155-334, gnl|rheMac2|chr17 (7585963-7586147) | |
| 155-334, gnl|rn3|chr6 (76921856-76921663) | |
| 155-334, gnl|tetNig1|chr6 (2711191-2711026) | |
| 155-334, gnl|xenTro1|scaffold_449 (633919-634092) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ese (0.126502) |