Non-Coding RNA Search

Ss1.1-Mixn-0011c17.5

Sequence:


               
               CTCAAAAATCACACCAGCCCACACCAGCCCTGTCCCTGGCTGGCGTCCCCTCCTGCCTCC
CTCCTGCCCCTGATGCGCAGGGCCCAGGATGGGGGCAGAGTGGGCAGGACCCAAGCTTCT
GGGCCTGTTCTCTGGCATCTCCACTGAAAGGGCCATCTTTTGTGCTGTGTGACCACTAGA
GAGAGAGTTTGTGCCATAACCCTGATGTGTGCGCTGGGGGGCAGAAGGTGCCGCTGGCGG
TGGGCTTCCCACAGGCCCAGATCACACAGGGAACTGGATCGGGTGGTGTGAGCACGTGGG
TGGCGGGGATGGGGGCACCCAAAGTATTAGCTTCCATAGAGGATTAGTGTGCCAAGATCC
CAGAGTGAGCTTGGCCACAGTGCCAAACCTCCCTGCGGGCCGGGTGCCCCCAACAGTTGC
CTGGCCCTATGCCATGCAGAGGAGGGTTGGGGTGGCAAGCCTCGGCCCCTTCTTCACCCA
GTGTGTGAGGTTAGTTTCTGGTGAACTTCACCTCCGTGGCGCTTCCCCTGAGTGGCGACC
CCCCGCCCCCACTGTGTCCCATCACCCATCAGAACTGCCCTCCCAGTGCCAACACCCCCA
GTGGCAGTGAGGGACCTTGACCGGGCTGGCCGGTGGGGGCGACCTTGTCCGGTTGTACTT
GTATATTAAACAGTCCTGATTTCAGATGACTTAAACCTTAGCCTATTTAAAAAAGAATAT
TATATAAAAATGCTGTTTTTAAACCTTTGGTCATTGAAATGCATGTGTTGTCTGTGCGGG
CTGAGGGCCGGGCGCCATCAGCTCAGTGCCAACCTTCTGTGGCCAGAGCTGCCCACGTCC
AGGCAGTGGTGGTGGCTCTGCTCAGCATATCGGGGCCCTGACCCCTTAATCCAGAGATAC
CTATGGAAATTGACTTTTCATATCTTTCTCCTGAAATGAATTCTCTTTTAAATTGGAATA
AATTTTGTTCCTAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCAAAAATCACACCAGCCCACACCAGCCCTGTCCCTGGCTGGCGTCCCCTCCTGCCTCC
CTCCTGCCCCTGATGCGCAGGGCCCAGGATGGGGGCAGAGTGGGCAGGACCCAAGCTTCT
GGGCCTGTTCTCTGGCATCTCCACTGAAAGGGCCATCTTTTGTGCTGTGTGACCACTAGA
GAGAGAGTTTGTGCCATAACCCTGATGTGTGCGCTGGGGGGCAGAAGGTGCCGCTGGCGG
TGGGCTTCCCACAGGCCCAGATCACACAGGGAACTGGATCGGGTGGTGTGAGCACGTGGG
TGGCGGGGATGGGGGCACCCAAAGTATTAGCTTCCATAGAGGATTAGTGTGCCAAGATCC
CAGAGTGAGCTTGGCCACAGTGCCAAACCTCCCTGCGGGCCGGGTGCCCCCAACAGTTGC
CTGGCCCTATGCCATGCAGAGGAGGGTTGGGGTGGCAAGCCTCGGCCCCTTCTTCACCCA
GTGTGTGAGGTTAGTTTCTGGTGAACTTCACCTCCGTGGCGCTTCCCCTGAGTGGCGACC
CCCCGCCCCCACTGTGTCCCATCACCCATCAGAACTGCCCTCCCAGTGCCAACACCCCCA
GTGGCAGTGAGGGACCTTGACCGGGCTGGCCGGTGGGGGCGACCTTGTCCGGTTGTACTT
GTATATTAAACAGTCCTGATTTCAGATGACTTAAACCTTAGCCTATTTAAAAAAGAATAT
TATATAAAAATGCTGTTTTTAAACCTTTGGTCATTGAAATGCATGTGTTGTCTGTGCGGG
CTGAGGGCCGGGCGCCATCAGCTCAGTGCCAACCTTCTGTGGCCAGAGCTGCCCACGTCC
AGGCAGTGGTGGTGGCTCTGCTCAGCATATCGGGGCCCTGACCCCTTAATCCAGAGATAC
CTATGGAAATTGACTTTTCATATCTTTCTCCTGAAATGAATTCTCTTTTAAATTGGAATA
AATTTTGTTCCTAAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               857-975, - strand, RNAz p=0.682647

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               857-975, - strand, RNAz p=0.682647

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               6-975, gnl|bosTau2|chr7 (16595360-16596299)
               

               
               6-975, gnl|Hg17|chr19 (3073751-3074997)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               6-975, gnl|bosTau2|chr7 (16595360-16596299)
               

               
               6-975, gnl|Hg17|chr19 (3073751-3074997)

Expressed library(ies): 10 entry(ies)

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Expressed library(ies): 10 entry(ies)

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               jej (0.395687)
               

               
               duo (0.345602)
               

               
               ece (0.229305)
               

               
               fcc (0.197785)
               

               
               nlu (0.191681)
               

               
               ill (0.175593)
               

               
               pty (0.142714)
               

               
               pla (0.133672)
               

               
               ute (0.132784)
               

               
               ebs (0.118301)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jej (0.395687)
               

               
               duo (0.345602)
               

               
               ece (0.229305)
               

               
               fcc (0.197785)
               

               
               nlu (0.191681)
               

               
               ill (0.175593)
               

               
               pty (0.142714)
               

               
               pla (0.133672)
               

               
               ute (0.132784)
               

               
               ebs (0.118301)

	6-975, gnl\|bosTau2\|chr7 (16595360-16596299)
	6-975, gnl\|Hg17\|chr19 (3073751-3074997)

	jej (0.395687)
	duo (0.345602)
	ece (0.229305)
	fcc (0.197785)
	nlu (0.191681)
	ill (0.175593)
	pty (0.142714)
	pla (0.133672)
	ute (0.132784)
	ebs (0.118301)