Non-Coding RNA Search

Ss1.1-Mixn-0011d19.5

Sequence:


               
               AGAGATTGTAGGAGATGTTTCAGCAGCCTAGTAGGAGATGTACGAATAGTGTGAGACAAG
GAACGGAAGCCAGAGTCAGACGTCCCTTTGAAGGCAGTTTGGATTTGGGGCTGCGCTGCT
GTGGTGCAGTCAGACCATGGGCTCGGCCACGCACTGGGGAGAGTGGTTCCTGAACCTGCG
GGTGTCCCCCTCCGGGGTATTTGGTGTGGCCTTCCTTGCGCGAGTGGCCCTGGTTTTCTA
TGGGGTCTTCCAGGACCGGACCCTGCTCGTGAAGTACACAGACATCGACTACCAGGTCTT
CACGGACGCCGCGCGCTTCGTGACGGAAGGGCGCTCCCCTTACCTGAGGGCGACCTACCG
TTACACACCGCTGCTGGGGTGGCTTCTCACTCCCAACATCTATGTTAGTGAACTCTTTGG
AAAGTTTCTCTTCATCAGCTTCGACCTCCTCACCGCCTTCCTCTTATACCGTCTGCTGCT
GCTTAAGGGGCTGGGCCAACGTCAGGCTTGCGGTTACTGTGTCTTTTGGCTTCTTAACCC
CCTACCTATGGCGGTGTCCAGCCGAGGCAATGCGGACTCGATCGTCGCCTCCCTGGTGCT
TATGGCCTTGTACCTAATAGAAAAAAAATTCGTCGCGCGTGCCGCTGTATTCTATGGTTT
CGCAGTGCATTTGAAGATGTATCCAGTGACCTATAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGAGATTGTAGGAGATGTTTCAGCAGCCTAGTAGGAGATGTACGAATAGTGTGAGACAAG
GAACGGAAGCCAGAGTCAGACGTCCCTTTGAAGGCAGTTTGGATTTGGGGCTGCGCTGCT
GTGGTGCAGTCAGACCATGGGCTCGGCCACGCACTGGGGAGAGTGGTTCCTGAACCTGCG
GGTGTCCCCCTCCGGGGTATTTGGTGTGGCCTTCCTTGCGCGAGTGGCCCTGGTTTTCTA
TGGGGTCTTCCAGGACCGGACCCTGCTCGTGAAGTACACAGACATCGACTACCAGGTCTT
CACGGACGCCGCGCGCTTCGTGACGGAAGGGCGCTCCCCTTACCTGAGGGCGACCTACCG
TTACACACCGCTGCTGGGGTGGCTTCTCACTCCCAACATCTATGTTAGTGAACTCTTTGG
AAAGTTTCTCTTCATCAGCTTCGACCTCCTCACCGCCTTCCTCTTATACCGTCTGCTGCT
GCTTAAGGGGCTGGGCCAACGTCAGGCTTGCGGTTACTGTGTCTTTTGGCTTCTTAACCC
CCTACCTATGGCGGTGTCCAGCCGAGGCAATGCGGACTCGATCGTCGCCTCCCTGGTGCT
TATGGCCTTGTACCTAATAGAAAAAAAATTCGTCGCGCGTGCCGCTGTATTCTATGGTTT
CGCAGTGCATTTGAAGATGTATCCAGTGACCTATAT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               452-571, + strand, RNAz p=0.781382

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               452-571, + strand, RNAz p=0.781382

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               23-696, gnl|bosTau2|chr3 (5007908-5008580)
               

               
               23-696, gnl|Hg17|chr1 (156814716-156814043)
               

               
               23-696, gnl|Mm7|chr1 (172346750-172347431)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               23-696, gnl|bosTau2|chr3 (5007908-5008580)
               

               
               23-696, gnl|Hg17|chr1 (156814716-156814043)
               

               
               23-696, gnl|Mm7|chr1 (172346750-172347431)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               fty (0.17584)
               

               
               ecc (0.115035)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fty (0.17584)
               

               
               ecc (0.115035)

	23-696, gnl\|bosTau2\|chr3 (5007908-5008580)
	23-696, gnl\|Hg17\|chr1 (156814716-156814043)
	23-696, gnl\|Mm7\|chr1 (172346750-172347431)