Non-Coding RNA Search

Ss1.1-Mixn-0011e15.5

Sequence:


               
               GTTTTCCCCAGCTTTGGGTGGTGGCTGCTGCTGGGCTCCCGCTTCCCGTCGGCGGAGGGC
GAGGCGGCGTGGACCGCGGCCCCGGCACCCCGCGCCCTGCCGCCCGCAGCCGCGCGCCCG
CCCGCCCGCCGCGCCCCGAGCTCCGAGCTCCTCGCCTCAGTGCCCGGCCGCCGCCGCCGC
CGCGGCCCAGCGAGCGGCCCAGATGCAGGCCATCAAGTGTGTGGTGGTGGGAGACGGAGC
TGTGGGTAAAACTTGCCTCCTGATCAGTTACACGACCAATGCCTTTCCCGGAGAATATAT
CCCCACGGTCTTTGACAACTATTCTGCCAATGTTATGGTGGATGGAAAACCGGTGAATCT
GGGCTTATGGGATACGGCTGGACAAGAAGATTACGACCGGTTACGTCCCCTGTCCTACCC
ACAAACAGACGTATTCTTAATTTGCTTTTCTCTTGTGAGCCCTGCATCTTTTGAAAATGT
TCGCGCAAAGTGGTACCCAGAAGTGCGACACCATTGTCCCAACACTCCCATCATCCTGGT
GGGGACGAAGCTTGATCTCAGGGATGATAAAGACACGATCGAGAAACTGAAGGAGAAGAA
GCTGACTCCCATCACCTACCCGCAGGGCTTGGCCATGGCGAAGGAGATCGGTGCTGTGAA
ATACCTGGAGTGCTCGGCGCTCACGCAGCGGGGCCTCAAGACAGTGTTCGACGAAGCCAT
CCGAGCGGTTCTCTGCCCGCCCCCCGTCAAGAAGAGGAAGAGGAAGTGCCTGCTGTTGTA
AACGCCTGGGGCCCGGGGCGGGGGCCCGTCCCGCCCCGAACCTTTGTCTGCTTTGCTCAA
ATGTGGAGCCTTCGCACTCAATGCCAAGTTTTTGTTACAGATTAGTTTTTCCATAAAACC
GTTTTGAACCAATCAGTAATTTCTAGGTTTTTCTCTGTTTAAAGTGTAAGAGTTTAAACT
TTCACATTCTATTAAAGTTTAGCCCTAAAATGAAAAAAAAAAAAAAAACCTTATTTTTCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTTTCCCCAGCTTTGGGTGGTGGCTGCTGCTGGGCTCCCGCTTCCCGTCGGCGGAGGGC
GAGGCGGCGTGGACCGCGGCCCCGGCACCCCGCGCCCTGCCGCCCGCAGCCGCGCGCCCG
CCCGCCCGCCGCGCCCCGAGCTCCGAGCTCCTCGCCTCAGTGCCCGGCCGCCGCCGCCGC
CGCGGCCCAGCGAGCGGCCCAGATGCAGGCCATCAAGTGTGTGGTGGTGGGAGACGGAGC
TGTGGGTAAAACTTGCCTCCTGATCAGTTACACGACCAATGCCTTTCCCGGAGAATATAT
CCCCACGGTCTTTGACAACTATTCTGCCAATGTTATGGTGGATGGAAAACCGGTGAATCT
GGGCTTATGGGATACGGCTGGACAAGAAGATTACGACCGGTTACGTCCCCTGTCCTACCC
ACAAACAGACGTATTCTTAATTTGCTTTTCTCTTGTGAGCCCTGCATCTTTTGAAAATGT
TCGCGCAAAGTGGTACCCAGAAGTGCGACACCATTGTCCCAACACTCCCATCATCCTGGT
GGGGACGAAGCTTGATCTCAGGGATGATAAAGACACGATCGAGAAACTGAAGGAGAAGAA
GCTGACTCCCATCACCTACCCGCAGGGCTTGGCCATGGCGAAGGAGATCGGTGCTGTGAA
ATACCTGGAGTGCTCGGCGCTCACGCAGCGGGGCCTCAAGACAGTGTTCGACGAAGCCAT
CCGAGCGGTTCTCTGCCCGCCCCCCGTCAAGAAGAGGAAGAGGAAGTGCCTGCTGTTGTA
AACGCCTGGGGCCCGGGGCGGGGGCCCGTCCCGCCCCGAACCTTTGTCTGCTTTGCTCAA
ATGTGGAGCCTTCGCACTCAATGCCAAGTTTTTGTTACAGATTAGTTTTTCCATAAAACC
GTTTTGAACCAATCAGTAATTTCTAGGTTTTTCTCTGTTTAAAGTGTAAGAGTTTAAACT
TTCACATTCTATTAAAGTTTAGCCCTAAAATGAAAAAAAAAAAAAAAACCTTATTTTTCA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q6GL60_XENTR

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q6GL60_XENTR

Aligned organism(s): 12 entry(ies)

More info

Aligned organism(s): 12 entry(ies)

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               1-184, gnl|bosTau2|chr25 (33341497-33341680)
               

               
               1-184, gnl|Hg17|chr7 (6187411-6187590)
               

               
               1-184, gnl|Mm7|chr5 (142560273-142560101)
               


               
               198-751, gnl|bosTau2|chr15 (32927010-32926456)
               

               
               198-751, gnl|Hg17|chr11 (3805950-3805396)
               

               
               198-751, gnl|Mm7|chr7 (98286350-98285795)
               


               
               221-542, gnl|bosTau2|chr11 (61538122-61538443)
               

               
               221-542, gnl|Hg17|chr2 (20568879-20569200)
               

               
               221-542, gnl|Mm7|chr12 (8525641-8525320)
               


               
               837-993, gnl|bosTau2|chr11 (57570725-57570568)
               

               
               837-993, gnl|Hg17|chr7 (6215410-6215563)
               

               
               837-993, gnl|Mm7|chr5 (142539192-142539044)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-184, gnl|bosTau2|chr25 (33341497-33341680)
               

               
               1-184, gnl|Hg17|chr7 (6187411-6187590)
               

               
               1-184, gnl|Mm7|chr5 (142560273-142560101)
               


               
               198-751, gnl|bosTau2|chr15 (32927010-32926456)
               

               
               198-751, gnl|Hg17|chr11 (3805950-3805396)
               

               
               198-751, gnl|Mm7|chr7 (98286350-98285795)
               


               
               221-542, gnl|bosTau2|chr11 (61538122-61538443)
               

               
               221-542, gnl|Hg17|chr2 (20568879-20569200)
               

               
               221-542, gnl|Mm7|chr12 (8525641-8525320)
               


               
               837-993, gnl|bosTau2|chr11 (57570725-57570568)
               

               
               837-993, gnl|Hg17|chr7 (6215410-6215563)
               

               
               837-993, gnl|Mm7|chr5 (142539192-142539044)

Expressed library(ies): 25 entry(ies)

More info

Expressed library(ies): 25 entry(ies)

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               cli (0.458435)
               

               
               pla (0.401016)
               

               
               col (0.390016)
               

               
               elu (0.385356)
               

               
               duo (0.345602)
               

               
               eru (0.240096)
               

               
               mgp (0.230681)
               

               
               nms (0.213858)
               

               
               nbm (0.198649)
               

               
               fcc (0.197785)
               

               
               eje (0.197668)
               

               
               sto (0.179824)
               

               
               ill (0.175593)
               

               
               ton (0.1755)
               

               
               nje (0.16592)
               

               
               cki (0.165235)
               

               
               cje (0.165235)
               

               
               nco (0.161734)
               

               
               cag (0.151194)
               

               
               hyp (0.142837)
               

               
               ssp (0.13552)
               

               
               ste (0.135208)
               

               
               cly (0.120642)
               

               
               ecc (0.115035)
               

               
               jej (0.0989218)

Expressed library(ies): 25 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cli (0.458435)
               

               
               pla (0.401016)
               

               
               col (0.390016)
               

               
               elu (0.385356)
               

               
               duo (0.345602)
               

               
               eru (0.240096)
               

               
               mgp (0.230681)
               

               
               nms (0.213858)
               

               
               nbm (0.198649)
               

               
               fcc (0.197785)
               

               
               eje (0.197668)
               

               
               sto (0.179824)
               

               
               ill (0.175593)
               

               
               ton (0.1755)
               

               
               nje (0.16592)
               

               
               cki (0.165235)
               

               
               cje (0.165235)
               

               
               nco (0.161734)
               

               
               cag (0.151194)
               

               
               hyp (0.142837)
               

               
               ssp (0.13552)
               

               
               ste (0.135208)
               

               
               cly (0.120642)
               

               
               ecc (0.115035)
               

               
               jej (0.0989218)

	1-184, gnl\|bosTau2\|chr25 (33341497-33341680)
	1-184, gnl\|Hg17\|chr7 (6187411-6187590)
	1-184, gnl\|Mm7\|chr5 (142560273-142560101)

	198-751, gnl\|bosTau2\|chr15 (32927010-32926456)
	198-751, gnl\|Hg17\|chr11 (3805950-3805396)
	198-751, gnl\|Mm7\|chr7 (98286350-98285795)

	221-542, gnl\|bosTau2\|chr11 (61538122-61538443)
	221-542, gnl\|Hg17\|chr2 (20568879-20569200)
	221-542, gnl\|Mm7\|chr12 (8525641-8525320)

	837-993, gnl\|bosTau2\|chr11 (57570725-57570568)
	837-993, gnl\|Hg17\|chr7 (6215410-6215563)
	837-993, gnl\|Mm7\|chr5 (142539192-142539044)

	cli (0.458435)
	pla (0.401016)
	col (0.390016)
	elu (0.385356)
	duo (0.345602)
	eru (0.240096)
	mgp (0.230681)
	nms (0.213858)
	nbm (0.198649)
	fcc (0.197785)
	eje (0.197668)
	sto (0.179824)
	ill (0.175593)
	ton (0.1755)
	nje (0.16592)
	cki (0.165235)
	cje (0.165235)
	nco (0.161734)
	cag (0.151194)
	hyp (0.142837)
	ssp (0.13552)
	ste (0.135208)
	cly (0.120642)
	ecc (0.115035)
	jej (0.0989218)