Non-Coding RNA Search

Ss1.1-Mixn-0011g24.5

Sequence:


               
               GTATTCATGGCATAGTTGATAGCTAAGTGTGACTGCCTTGCGGTTTGGGGCAGTTCGGGG
GTATGTGGGAAGGTGATGATAAGACCCGAAACTCTTTGTTTTTAATAGCCTTGTGAAGAG
CTGTTAAGGGGACTGGGACTCTTCAATCATGAAGGTACTGTCACCACCCTCAGATGTCTG
TGTAAAACGGAAGAAACGTACTCAACTTGGTCATAGAGGCCTCTGAGGATAAACAGAAGG
AACAGAAGTCAGACTTCAGCTTGAGAAGAAATAGGGGCTTTTGAATAATCCTAGTTGTTC
AGGGATGGCTTTGTCCACTCAGGAGTGTAGTCCCTGTTACTAAGTGAGCAGGATGTGATG
GTCAGATGTTTCTCAGGTCTGTTATTAAGAGTTTTAGACACTGGAGTAATGGTTCAGACT
GAGTGACTTTTTGTTTTTCATTCATCAAAGAATTTACTGAGCACTGACTGCTTGCTGTTC
CAGACCTTGGGAATCCAGCAGTAAGCAAGATCTGCAAGGTCCTGTTGTCCTGTAGTTGCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTATTCATGGCATAGTTGATAGCTAAGTGTGACTGCCTTGCGGTTTGGGGCAGTTCGGGG
GTATGTGGGAAGGTGATGATAAGACCCGAAACTCTTTGTTTTTAATAGCCTTGTGAAGAG
CTGTTAAGGGGACTGGGACTCTTCAATCATGAAGGTACTGTCACCACCCTCAGATGTCTG
TGTAAAACGGAAGAAACGTACTCAACTTGGTCATAGAGGCCTCTGAGGATAAACAGAAGG
AACAGAAGTCAGACTTCAGCTTGAGAAGAAATAGGGGCTTTTGAATAATCCTAGTTGTTC
AGGGATGGCTTTGTCCACTCAGGAGTGTAGTCCCTGTTACTAAGTGAGCAGGATGTGATG
GTCAGATGTTTCTCAGGTCTGTTATTAAGAGTTTTAGACACTGGAGTAATGGTTCAGACT
GAGTGACTTTTTGTTTTTCATTCATCAAAGAATTTACTGAGCACTGACTGCTTGCTGTTC
CAGACCTTGGGAATCCAGCAGTAAGCAAGATCTGCAAGGTCCTGTTGTCCTGTAGTTGCC

Aligned organism(s): 10 entry(ies)

More info

Aligned organism(s): 10 entry(ies)

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               2-540, gnl|bosTau2|chr9 (40418895-40418329)
               

               
               2-540, gnl|canFam2|chr1 (28638017-28638412)
               

               
               2-540, gnl|hg17|chr6 (132863448-132863835)
               

               
               2-540, gnl|Hg17|chr6 (132864307-132863447)
               

               
               2-540, gnl|loxAfr1|scaffold_7646 (34471-34098)
               

               
               2-540, gnl|mm7|chr10 (23908952-23908689)
               

               
               2-540, gnl|oryCun1|scaffold_200858 (13614-13265)
               

               
               2-540, gnl|panTro1|chr5 (135508537-135508924)
               

               
               2-540, gnl|rheMac2|chr4 (131394485-131394098)
               

               
               2-540, gnl|rn3|chr1 (21755671-21756015)

Aligned organism(s): 10 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-540, gnl|bosTau2|chr9 (40418895-40418329)
               

               
               2-540, gnl|canFam2|chr1 (28638017-28638412)
               

               
               2-540, gnl|hg17|chr6 (132863448-132863835)
               

               
               2-540, gnl|Hg17|chr6 (132864307-132863447)
               

               
               2-540, gnl|loxAfr1|scaffold_7646 (34471-34098)
               

               
               2-540, gnl|mm7|chr10 (23908952-23908689)
               

               
               2-540, gnl|oryCun1|scaffold_200858 (13614-13265)
               

               
               2-540, gnl|panTro1|chr5 (135508537-135508924)
               

               
               2-540, gnl|rheMac2|chr4 (131394485-131394098)
               

               
               2-540, gnl|rn3|chr1 (21755671-21756015)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

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               spl (0.143184)
               

               
               tra (0.123092)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spl (0.143184)
               

               
               tra (0.123092)

	2-540, gnl\|bosTau2\|chr9 (40418895-40418329)
	2-540, gnl\|canFam2\|chr1 (28638017-28638412)
	2-540, gnl\|hg17\|chr6 (132863448-132863835)
	2-540, gnl\|Hg17\|chr6 (132864307-132863447)
	2-540, gnl\|loxAfr1\|scaffold_7646 (34471-34098)
	2-540, gnl\|mm7\|chr10 (23908952-23908689)
	2-540, gnl\|oryCun1\|scaffold_200858 (13614-13265)
	2-540, gnl\|panTro1\|chr5 (135508537-135508924)
	2-540, gnl\|rheMac2\|chr4 (131394485-131394098)
	2-540, gnl\|rn3\|chr1 (21755671-21756015)