Non-Coding RNA Search

Ss1.1-Mixn-0011h19.5

Sequence:


               
               GAAGTGTTGGATTGTAGCGGCTCTGGTATTGGAAGCGAGTTAGTAGCGGCAGCCGAGGCA
GCGAGGGGGTACCCGAAGCAATCGGATTCTTGCGGCTGAGCAGGGTGAGTGGTGCTTGGG
GCTCATTCTGGCCGCATACCCGTGGGGCGGCTGATGAGCAGCGGTGCTTCCGTGGTACCG
GGAGCGCACCTGGGCAGATGTACCAGCCGCTTCGTGGGTTTCGAGCCCAAGGGCCAGCTC
CAGTATCAAAAGCCGGGGGCCGGAAACGGCCCAGATGCCAATTTTGCCAGACTTGGAGGT
CAGGAAATGTGGCTTAGCCTGCTGGCGCCGCGAGCTTGGGCGACAGCCGGCCTGGGAAAC
CCGAGCCCCGCGGATCTGACTCTGGGACTAAGTTTAGTTTCTAACGTAAACTTGCCGGAT
TCAAGAGTTTGCGCAAAAACTGTAGCCCATTGCCTCCCCCACCACCACTCCGGCGCACCT
CCCCGCTGCAGCTGTTGTTGCAGCTGTGTGGCTACGTTTAGTTGGAATAACCACCTCAAA
TTAGCATCTTCCTCAGCTCAGTGTCCATTCTGTAATTAGAACTTTGTTTTAAGTGATATT
TGGGCAAAGGGAGGTTTGGTGTTTAATTTGCGGCTTCAGAAAAATTCCATAATACACCAC
CACATTCCTTTTGGGTGGAGACTTGGGGTTATATCAGTTTCCCAAAGTGTTTCTTTTTAT
AGTAGTTGAATTGGTTTATCAAAGAGTATGTCAGTTCTTTACAGAACTTGGAGTAGAAAT
AAGCGTTCAGGTGAGATTTTAACTTCAGCGCACAAAGTTTTATATCTAAAGGTGAAGAAA
GTGAGTATTTCTTAAAATTATTGCTGTTTGTTTCATGTTCTGGAAGGCATTCGATAAAAC
TTGACCAGAGAGCTTTTTATTTTCAAAAGTGAGGCTTTACTCTCAGTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAGTGTTGGATTGTAGCGGCTCTGGTATTGGAAGCGAGTTAGTAGCGGCAGCCGAGGCA
GCGAGGGGGTACCCGAAGCAATCGGATTCTTGCGGCTGAGCAGGGTGAGTGGTGCTTGGG
GCTCATTCTGGCCGCATACCCGTGGGGCGGCTGATGAGCAGCGGTGCTTCCGTGGTACCG
GGAGCGCACCTGGGCAGATGTACCAGCCGCTTCGTGGGTTTCGAGCCCAAGGGCCAGCTC
CAGTATCAAAAGCCGGGGGCCGGAAACGGCCCAGATGCCAATTTTGCCAGACTTGGAGGT
CAGGAAATGTGGCTTAGCCTGCTGGCGCCGCGAGCTTGGGCGACAGCCGGCCTGGGAAAC
CCGAGCCCCGCGGATCTGACTCTGGGACTAAGTTTAGTTTCTAACGTAAACTTGCCGGAT
TCAAGAGTTTGCGCAAAAACTGTAGCCCATTGCCTCCCCCACCACCACTCCGGCGCACCT
CCCCGCTGCAGCTGTTGTTGCAGCTGTGTGGCTACGTTTAGTTGGAATAACCACCTCAAA
TTAGCATCTTCCTCAGCTCAGTGTCCATTCTGTAATTAGAACTTTGTTTTAAGTGATATT
TGGGCAAAGGGAGGTTTGGTGTTTAATTTGCGGCTTCAGAAAAATTCCATAATACACCAC
CACATTCCTTTTGGGTGGAGACTTGGGGTTATATCAGTTTCCCAAAGTGTTTCTTTTTAT
AGTAGTTGAATTGGTTTATCAAAGAGTATGTCAGTTCTTTACAGAACTTGGAGTAGAAAT
AAGCGTTCAGGTGAGATTTTAACTTCAGCGCACAAAGTTTTATATCTAAAGGTGAAGAAA
GTGAGTATTTCTTAAAATTATTGCTGTTTGTTTCATGTTCTGGAAGGCATTCGATAAAAC
TTGACCAGAGAGCTTTTTATTTTCAAAAGTGAGGCTTTACTCTCAGTG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               39-131, + strand, RNAz p=0.696781

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               39-131, + strand, RNAz p=0.696781

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_006471, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_006471, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-941, gnl|bosTau2|chr24 (26758448-26757500)
               

               
               1-941, gnl|Hg17|chr18 (3237811-3238724)
               

               
               1-941, gnl|Mm7|chr17 (69281573-69280719)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-941, gnl|bosTau2|chr24 (26758448-26757500)
               

               
               1-941, gnl|Hg17|chr18 (3237811-3238724)
               

               
               1-941, gnl|Mm7|chr17 (69281573-69280719)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               thg (0.126791)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               thg (0.126791)

	1-941, gnl\|bosTau2\|chr24 (26758448-26757500)
	1-941, gnl\|Hg17\|chr18 (3237811-3238724)
	1-941, gnl\|Mm7\|chr17 (69281573-69280719)